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/
RNANet
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Authored by
Louis BECQUEY
2021-06-17 07:21:08 +0200
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Commit
0e22c8ff3e500a4ec99c0929c69a32ab88343fa0
0e22c8ff
2 parents
949c280c
8bfd8da3
Merge branch 'stage_aglae'
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Showing
1 changed file
with
21 additions
and
25 deletions
statistics.py
statistics.py
View file @
0e22c8f
...
...
@@ -2494,14 +2494,14 @@ def gmm_hrna():
os
.
makedirs
(
runDir
+
"/results/figures/HiRE-RNA/distances/"
,
exist_ok
=
True
)
os
.
chdir
(
runDir
+
"/results/figures/HiRE-RNA/distances/"
)
GMM_histo
_toric
(
lastc4p_p_o5p
,
"C4'-P-O5'"
,
toric
=
True
)
GMM_histo
_toric
(
lastc1p_lastc4p_p
,
"C1'-C4'-P"
,
toric
=
True
)
GMM_histo
_toric
(
lastc5p_lastc4p_p
,
"C5'-C4'-P"
,
toric
=
True
)
GMM_histo
_toric
(
p_o5p_c5p
,
"P-O5'-C5'"
,
toric
=
True
)
GMM_histo
_toric
(
o5p_c5p_c4p
,
"O5'-C5'-C4'"
,
toric
=
True
)
GMM_histo
_toric
(
c5p_c4p_c1p
,
"C5'-C4'-C1'"
,
toric
=
True
)
GMM_histo
_toric
(
c4p_c1p_b1
,
"C4'-C1'-B1"
,
toric
=
True
)
GMM_histo
_toric
(
c1p_b1_b2
,
"C1'-B1-B2"
,
toric
=
True
)
GMM_histo
(
lastc4p_p_o5p
,
"C4'-P-O5'"
,
toric
=
True
)
GMM_histo
(
lastc1p_lastc4p_p
,
"C1'-C4'-P"
,
toric
=
True
)
GMM_histo
(
lastc5p_lastc4p_p
,
"C5'-C4'-P"
,
toric
=
True
)
GMM_histo
(
p_o5p_c5p
,
"P-O5'-C5'"
,
toric
=
True
)
GMM_histo
(
o5p_c5p_c4p
,
"O5'-C5'-C4'"
,
toric
=
True
)
GMM_histo
(
c5p_c4p_c1p
,
"C5'-C4'-C1'"
,
toric
=
True
)
GMM_histo
(
c4p_c1p_b1
,
"C4'-C1'-B1"
,
toric
=
True
)
GMM_histo
(
c1p_b1_b2
,
"C1'-B1-B2"
,
toric
=
True
)
GMM_histo
(
lastc4p_p_o5p
,
"C4'-P-O5'"
,
toric
=
True
,
hist
=
False
,
couleur
=
'lightcoral'
)
GMM_histo
(
lastc1p_lastc4p_p
,
"C1'-C4'-P"
,
toric
=
True
,
hist
=
False
,
couleur
=
'limegreen'
)
...
...
@@ -2533,14 +2533,14 @@ def gmm_hrna():
os
.
makedirs
(
runDir
+
"/results/figures/HiRE-RNA/torsions/"
,
exist_ok
=
True
)
os
.
chdir
(
runDir
+
"/results/figures/HiRE-RNA/torsions/"
)
GMM_histo
_toric
(
p_o5_c5_c4
,
"P-O5'-C5'-C4'"
,
toric
=
True
)
GMM_histo
_toric
(
o5_c5_c4_c1
,
"O5'-C5'-C4'-C1'"
,
toric
=
True
)
GMM_histo
_toric
(
c5_c4_c1_b1
,
"C5'-C4'-C1'-B1"
,
toric
=
True
)
GMM_histo
_toric
(
c4_c1_b1_b2
,
"C4'-C1'-B1-B2"
,
toric
=
True
)
GMM_histo
_toric
(
o5_c5_c4_psuiv
,
"O5'-C5'-C4'-P°"
,
toric
=
True
)
GMM_histo
_toric
(
c5_c4_psuiv_o5suiv
,
"C5'-C4'-P°-O5'°"
,
toric
=
True
)
GMM_histo
_toric
(
c4_psuiv_o5suiv_c5suiv
,
"C4'-P°-O5'°-C5'°"
,
toric
=
True
)
GMM_histo
_toric
(
c1_c4_psuiv_o5suiv
,
"C1'-C4'-P°-O5'°"
,
toric
=
True
)
GMM_histo
(
p_o5_c5_c4
,
"P-O5'-C5'-C4'"
,
toric
=
True
)
GMM_histo
(
o5_c5_c4_c1
,
"O5'-C5'-C4'-C1'"
,
toric
=
True
)
GMM_histo
(
c5_c4_c1_b1
,
"C5'-C4'-C1'-B1"
,
toric
=
True
)
GMM_histo
(
c4_c1_b1_b2
,
"C4'-C1'-B1-B2"
,
toric
=
True
)
GMM_histo
(
o5_c5_c4_psuiv
,
"O5'-C5'-C4'-P°"
,
toric
=
True
)
GMM_histo
(
c5_c4_psuiv_o5suiv
,
"C5'-C4'-P°-O5'°"
,
toric
=
True
)
GMM_histo
(
c4_psuiv_o5suiv_c5suiv
,
"C4'-P°-O5'°-C5'°"
,
toric
=
True
)
GMM_histo
(
c1_c4_psuiv_o5suiv
,
"C1'-C4'-P°-O5'°"
,
toric
=
True
)
GMM_histo
(
p_o5_c5_c4
,
"P-O5'-C5'-C4'"
,
toric
=
True
,
hist
=
False
,
couleur
=
'darkred'
)
GMM_histo
(
o5_c5_c4_c1
,
"O5'-C5'-C4'-C1'"
,
toric
=
True
,
hist
=
False
,
couleur
=
'chocolate'
)
...
...
@@ -2992,7 +2992,7 @@ if __name__ == "__main__":
#exit()
process_jobs
(
joblist
)
#
process_jobs(joblist)
# Now process the memory-heavy tasks family by family
if
DO_AVG_DISTANCE_MATRIX
:
...
...
@@ -3008,11 +3008,11 @@ if __name__ == "__main__":
# finish the work after the parallel portions
per_chain_stats
()
# per chain base frequencies en basepair types
seq_idty
()
# identity matrices from pre-computed .npy matrices
stats_pairs
()
#
per_chain_stats() # per chain base frequencies en basepair types
#
seq_idty() # identity matrices from pre-computed .npy matrices
#
stats_pairs()
if
n_unmapped_chains
:
general_stats
()
#
general_stats()
os
.
makedirs
(
runDir
+
"/results/figures/GMM/"
,
exist_ok
=
True
)
os
.
makedirs
(
runDir
+
"/results/geometry/json/"
,
exist_ok
=
True
)
joblist
=
[]
...
...
@@ -3037,7 +3037,3 @@ if __name__ == "__main__":
if
len
(
joblist
):
process_jobs
(
joblist
)
\ No newline at end of file
\ No newline at end of file
...
...
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