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21 additions
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25 deletions
... | @@ -2494,14 +2494,14 @@ def gmm_hrna(): | ... | @@ -2494,14 +2494,14 @@ def gmm_hrna(): |
2494 | os.makedirs(runDir + "/results/figures/HiRE-RNA/distances/", exist_ok=True) | 2494 | os.makedirs(runDir + "/results/figures/HiRE-RNA/distances/", exist_ok=True) |
2495 | os.chdir(runDir + "/results/figures/HiRE-RNA/distances/") | 2495 | os.chdir(runDir + "/results/figures/HiRE-RNA/distances/") |
2496 | 2496 | ||
2497 | - GMM_histo_toric(lastc4p_p_o5p, "C4'-P-O5'", toric=True) | 2497 | + GMM_histo(lastc4p_p_o5p, "C4'-P-O5'", toric=True) |
2498 | - GMM_histo_toric(lastc1p_lastc4p_p, "C1'-C4'-P", toric=True) | 2498 | + GMM_histo(lastc1p_lastc4p_p, "C1'-C4'-P", toric=True) |
2499 | - GMM_histo_toric(lastc5p_lastc4p_p, "C5'-C4'-P", toric=True) | 2499 | + GMM_histo(lastc5p_lastc4p_p, "C5'-C4'-P", toric=True) |
2500 | - GMM_histo_toric(p_o5p_c5p, "P-O5'-C5'", toric=True) | 2500 | + GMM_histo(p_o5p_c5p, "P-O5'-C5'", toric=True) |
2501 | - GMM_histo_toric(o5p_c5p_c4p, "O5'-C5'-C4'", toric=True) | 2501 | + GMM_histo(o5p_c5p_c4p, "O5'-C5'-C4'", toric=True) |
2502 | - GMM_histo_toric(c5p_c4p_c1p, "C5'-C4'-C1'", toric=True) | 2502 | + GMM_histo(c5p_c4p_c1p, "C5'-C4'-C1'", toric=True) |
2503 | - GMM_histo_toric(c4p_c1p_b1, "C4'-C1'-B1", toric=True) | 2503 | + GMM_histo(c4p_c1p_b1, "C4'-C1'-B1", toric=True) |
2504 | - GMM_histo_toric(c1p_b1_b2, "C1'-B1-B2", toric=True) | 2504 | + GMM_histo(c1p_b1_b2, "C1'-B1-B2", toric=True) |
2505 | 2505 | ||
2506 | GMM_histo(lastc4p_p_o5p, "C4'-P-O5'", toric=True, hist=False, couleur='lightcoral') | 2506 | GMM_histo(lastc4p_p_o5p, "C4'-P-O5'", toric=True, hist=False, couleur='lightcoral') |
2507 | GMM_histo(lastc1p_lastc4p_p, "C1'-C4'-P", toric=True, hist=False, couleur='limegreen') | 2507 | GMM_histo(lastc1p_lastc4p_p, "C1'-C4'-P", toric=True, hist=False, couleur='limegreen') |
... | @@ -2533,14 +2533,14 @@ def gmm_hrna(): | ... | @@ -2533,14 +2533,14 @@ def gmm_hrna(): |
2533 | os.makedirs(runDir + "/results/figures/HiRE-RNA/torsions/", exist_ok=True) | 2533 | os.makedirs(runDir + "/results/figures/HiRE-RNA/torsions/", exist_ok=True) |
2534 | os.chdir(runDir + "/results/figures/HiRE-RNA/torsions/") | 2534 | os.chdir(runDir + "/results/figures/HiRE-RNA/torsions/") |
2535 | 2535 | ||
2536 | - GMM_histo_toric(p_o5_c5_c4, "P-O5'-C5'-C4'", toric=True) | 2536 | + GMM_histo(p_o5_c5_c4, "P-O5'-C5'-C4'", toric=True) |
2537 | - GMM_histo_toric(o5_c5_c4_c1, "O5'-C5'-C4'-C1'", toric=True) | 2537 | + GMM_histo(o5_c5_c4_c1, "O5'-C5'-C4'-C1'", toric=True) |
2538 | - GMM_histo_toric(c5_c4_c1_b1, "C5'-C4'-C1'-B1", toric=True) | 2538 | + GMM_histo(c5_c4_c1_b1, "C5'-C4'-C1'-B1", toric=True) |
2539 | - GMM_histo_toric(c4_c1_b1_b2, "C4'-C1'-B1-B2", toric=True) | 2539 | + GMM_histo(c4_c1_b1_b2, "C4'-C1'-B1-B2", toric=True) |
2540 | - GMM_histo_toric(o5_c5_c4_psuiv, "O5'-C5'-C4'-P°", toric=True) | 2540 | + GMM_histo(o5_c5_c4_psuiv, "O5'-C5'-C4'-P°", toric=True) |
2541 | - GMM_histo_toric(c5_c4_psuiv_o5suiv, "C5'-C4'-P°-O5'°", toric=True) | 2541 | + GMM_histo(c5_c4_psuiv_o5suiv, "C5'-C4'-P°-O5'°", toric=True) |
2542 | - GMM_histo_toric(c4_psuiv_o5suiv_c5suiv, "C4'-P°-O5'°-C5'°", toric=True) | 2542 | + GMM_histo(c4_psuiv_o5suiv_c5suiv, "C4'-P°-O5'°-C5'°", toric=True) |
2543 | - GMM_histo_toric(c1_c4_psuiv_o5suiv, "C1'-C4'-P°-O5'°", toric=True) | 2543 | + GMM_histo(c1_c4_psuiv_o5suiv, "C1'-C4'-P°-O5'°", toric=True) |
2544 | 2544 | ||
2545 | GMM_histo(p_o5_c5_c4, "P-O5'-C5'-C4'", toric=True, hist=False, couleur='darkred') | 2545 | GMM_histo(p_o5_c5_c4, "P-O5'-C5'-C4'", toric=True, hist=False, couleur='darkred') |
2546 | GMM_histo(o5_c5_c4_c1, "O5'-C5'-C4'-C1'", toric=True, hist=False, couleur='chocolate') | 2546 | GMM_histo(o5_c5_c4_c1, "O5'-C5'-C4'-C1'", toric=True, hist=False, couleur='chocolate') |
... | @@ -2992,7 +2992,7 @@ if __name__ == "__main__": | ... | @@ -2992,7 +2992,7 @@ if __name__ == "__main__": |
2992 | 2992 | ||
2993 | #exit() | 2993 | #exit() |
2994 | 2994 | ||
2995 | - process_jobs(joblist) | 2995 | + # process_jobs(joblist) |
2996 | 2996 | ||
2997 | # Now process the memory-heavy tasks family by family | 2997 | # Now process the memory-heavy tasks family by family |
2998 | if DO_AVG_DISTANCE_MATRIX: | 2998 | if DO_AVG_DISTANCE_MATRIX: |
... | @@ -3008,11 +3008,11 @@ if __name__ == "__main__": | ... | @@ -3008,11 +3008,11 @@ if __name__ == "__main__": |
3008 | 3008 | ||
3009 | # finish the work after the parallel portions | 3009 | # finish the work after the parallel portions |
3010 | 3010 | ||
3011 | - per_chain_stats() # per chain base frequencies en basepair types | 3011 | + # per_chain_stats() # per chain base frequencies en basepair types |
3012 | - seq_idty() # identity matrices from pre-computed .npy matrices | 3012 | + # seq_idty() # identity matrices from pre-computed .npy matrices |
3013 | - stats_pairs() | 3013 | + # stats_pairs() |
3014 | if n_unmapped_chains: | 3014 | if n_unmapped_chains: |
3015 | - general_stats() | 3015 | + # general_stats() |
3016 | os.makedirs(runDir+"/results/figures/GMM/", exist_ok=True) | 3016 | os.makedirs(runDir+"/results/figures/GMM/", exist_ok=True) |
3017 | os.makedirs(runDir+"/results/geometry/json/", exist_ok=True) | 3017 | os.makedirs(runDir+"/results/geometry/json/", exist_ok=True) |
3018 | joblist = [] | 3018 | joblist = [] |
... | @@ -3037,7 +3037,3 @@ if __name__ == "__main__": | ... | @@ -3037,7 +3037,3 @@ if __name__ == "__main__": |
3037 | if len(joblist): | 3037 | if len(joblist): |
3038 | process_jobs(joblist) | 3038 | process_jobs(joblist) |
3039 | 3039 | ||
... | \ No newline at end of file | ... | \ No newline at end of file |
3040 | - | ||
3041 | - | ||
3042 | - | ||
3043 | - | ||
... | \ No newline at end of file | ... | \ No newline at end of file | ... | ... |
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