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Louis BECQUEY
/
RNANet
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Authored by
Louis BECQUEY
2020-08-25 07:09:43 +0000
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Commit
1854316d31fc4e05584490823720f9bae76a5d40
1854316d
1 parent
3b5ed451
Better parallel statistics computation
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3 changed files
with
2 additions
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1 deletions
RNAnet.py
automate.sh
statistics.py
RNAnet.py
View file @
1854316
...
...
@@ -1638,6 +1638,7 @@ def sql_ask_database(conn, sql, warn_every = 10):
@trace_unhandled_exceptions
def
sql_execute
(
conn
,
sql
,
many
=
False
,
data
=
None
,
warn_every
=
10
):
conn
.
execute
(
'pragma journal_mode=wal'
)
# Allow multiple other readers to ask things while we execute this writing query
for
_
in
range
(
100
):
# retry 100 times if it fails
try
:
if
many
:
...
...
automate.sh
View file @
1854316
...
...
@@ -3,7 +3,7 @@
# Run RNANet
cd
/home/lbecquey/Projects/RNANet;
rm -f stdout.txt stderr.txt errors.txt;
time
'./RNAnet.py --3d-folder /home/lbequey/Data/RNA/3D/ --seq-folder /home/lbecquey/Data/RNA/sequences/ -s -r 20.0'
> stdout.txt 2> stderr.txt;
time
'./RNAnet.py --3d-folder /home/lbequey/Data/RNA/3D/ --seq-folder /home/lbecquey/Data/RNA/sequences/ -s -r 20.0
--archive
'
> stdout.txt 2> stderr.txt;
# Sync in Seafile
seaf-cli start;
...
...
statistics.py
View file @
1854316
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