Louis BECQUEY / RNANet

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Louis BECQUEY
31785c99 1 parent c21f55fc

Sanitizing post computation checks

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Showing 3 changed files with 1471 additions and 31 deletions
......@@ -1286,46 +1286,37 @@ class Pipeline:
conn = sqlite3.connect(runDir + "/results/RNANet.db")
# Assert every structure is used
r = sql_ask_database(conn, """SELECT structure_id FROM structure
LEFT JOIN chain ON structure.pdb_id = chain.structure_id
WHERE chain_id IS NULL;""")
r = sql_ask_database(conn, """SELECT DISTINCT pdb_id FROM structure WHERE pdb_id NOT IN (SELECT DISTINCT structure_id FROM chain);""")
if len(r) and r[0][0] is not None:
warn("Structures without referenced chains have been detected")
for x in r:
print(x)
warn("Structures without referenced chains have been detected. This happens if we have known issues, for example.")
print(" ".join([x[0] for x in r]))
# Assert every chain is attached to a structure
r = sql_ask_database(conn, """SELECT chain_id, structure_id FROM chain
LEFT JOIN structure ON chain.structure_id = structure.pdb_id
WHERE pdb_id IS NULL;""")
r = sql_ask_database(conn, """SELECT DISTINCT chain_id, structure_id FROM chain WHERE structure_id NOT IN (SELECT DISTINCT pdb_id FROM structure);""")
if len(r) and r[0][0] is not None:
warn("Chains without referenced structures have been detected")
for x in r:
print(x)
print(" ".join([x[1]+'-'+x[0] for x in r]))
if self.HOMOLOGY:
# check if chains have been re_mapped:
r = sql_ask_database(conn, """SELECT COUNT(chain.chain_id) as Count, rfam_acc
FROM chain LEFT JOIN re_mapping
ON chain.chain_id = re_mapping.chain_id
WHERE index_ali IS NULL GROUP BY rfam_acc;""")
r = sql_ask_database(conn, """SELECT COUNT(DISTINCT chain_id) AS Count, rfam_acc FROM chain
WHERE chain_id NOT IN (SELECT DISTINCT chain_id FROM re_mapping)
GROUP BY rfam_acc;""")
if len(r) and r[0][0] is not None:
warn("Structures were not remapped:")
warn("Chains were not remapped (This happens if we have known issues for example):")
for x in r:
print(str(x[0]) + " chains of family " + x[1])
# check if some columns are missing in the remappings:
r = sql_ask_database(conn, """SELECT c.chain_id, c.structure_id, c.chain_name, c.rfam_acc, re_mapping.index_chain, re_mapping.index_ali
FROM chain as c
NATURAL JOIN re_mapping
LEFT JOIN align_column
ON re_mapping.index_ali=align_column.index_ali AND c.rfam_acc=align_column.rfam_acc
WHERE freq_A IS NULL;""")
if len(r) and r[0][0] is not None:
warn("Structures were not remapped:")
for x in r:
print(x)
# # TODO : Optimize this (too slow)
# # check if some columns are missing in the remappings:
# r = sql_ask_database(conn, """SELECT c.chain_id, c.structure_id, c.chain_name, c.rfam_acc, r.index_chain, r.index_ali
# FROM chain as c
# NATURAL JOIN re_mapping as r
# WHERE index_ali NOT IN (SELECT index_ali FROM align_column WHERE rfam_acc = c.rfam_acc);""")
# if len(r) and r[0][0] is not None:
# warn("Missing positions in the re-mapping:")
# for x in r:
# print(x)
conn.close()
......@@ -1806,7 +1797,7 @@ def work_mmcif(pdb_id):
with sqlite3.connect(runDir + "/results/RNANet.db") as conn:
sql_execute(conn, """INSERT OR REPLACE INTO structure (pdb_id, pdb_model, date, exp_method, resolution)
VALUES (?, ?, DATE(?), ?, ?);""", data = (pdb_id, 1, date, exp_meth, reso))
# run DSSR (you need to have it in your $PATH, follow x3dna installation instructions)
output = subprocess.run(["x3dna-dssr", f"-i={final_filepath}", "--json", "--auxfile=no"],
stdout=subprocess.PIPE, stderr=subprocess.PIPE)
......@@ -1964,11 +1955,12 @@ def work_realign(rfam_acc):
notify("Aligned new sequences together")
# And we merge the two alignments
p2= subprocess.run(["esl-alimerge", "-o", path_to_seq_data + f"realigned/{rfam_acc}++.stk", "--rna",
p2= subprocess.run(["esl-alimerge", "-o", path_to_seq_data + f"realigned/{rfam_acc}_merged.stk", "--rna",
path_to_seq_data + f"realigned/{rfam_acc}++.stk",
path_to_seq_data + f"realigned/{rfam_acc}_new.stk" ],
stdout=subprocess.DEVNULL, stderr=subprocess.PIPE)
stderr = p1.stderr.decode('utf-8') + p2.stderr.decode('utf-8')
subprocess.run(["mv", path_to_seq_data + f"realigned/{rfam_acc}_merged.stk", path_to_seq_data + f"realigned/{rfam_acc}++.stk"])
notify("Merged alignments into one")
# remove the partial files
......
2du3_1_D_1-71
2du4_1_C_1-71
2du5_1_D_1-71
2du6_1_D_1-71
1ml5_1_a_151-2903
1ml5_1_a_1-2914
1ml5_1_b_5-121
1ml5_1_A_2-1520
1ml5_1_A_7-1518
1ml5_1_A_7-1515
5b63_1_D_1-74
5b63_1_B_1-74
5yyn_1_D_1-74
5yyn_1_B_1-74
6prv_1_A_1-58
6prv_1_B_1-58
6prv_1_C_1-58
6prv_1_D_1-58
1hc8_1_C_1-58
1hc8_1_D_1-58
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1y39_1_D_1-58
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1qa6_1_D_1-58
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6ole_1_D_1267-4755
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6y2l_1_L8_1267-4755
6y0g_1_L8_1267-4755
6oli_1_D_1267-4755
6olg_1_A3_1267-4755
6y57_1_L8_1267-4755
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6om7_1_D_1267-4755
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6olf_1_D_1267-4755
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6olz_1_A3_1267-4755
5aj0_1_A3_1267-4755
5lks_1_L8_1267-4755
6ip6_1_1C_1267-4755
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4woi_1_BB_3-118
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1vy7_1_CY_1-73
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4qg3_1_B_1-80
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3eq3_1_Y_1-72
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1vqo_1_9_1-121
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1vq4_1_9_1-121
1vq6_1_9_1-121
1m90_1_B_1-121
1qvg_1_9_1-121
1vq5_1_9_1-121
1nji_1_B_1-121
3cxc_1_9_1-121
3cpw_1_9_1-121
1q81_1_B_1-121
1q86_1_B_1-121
1kc8_1_B_1-121
1k73_1_B_1-121
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1k9m_1_B_1-121
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1m1k_1_B_1-121
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1k8a_1_B_1-121
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1n8r_1_B_1-121
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1qtq_1_B_1-72
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1gsg_1_T_1-72
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2rdo_1_B_6-1522
2rdo_1_B_1-1528
2rdo_1_B_6-1460
2rdo_1_B_160-2893
2rdo_1_B_1-2904
2rdo_1_B_6-1457
4v48_1_A0_1-2903
4v48_1_A0_6-1522
4v48_1_A0_1-1528
4v48_1_A0_6-1460
4v48_1_A0_160-2893
4v48_1_A0_1-2904
4v48_1_A0_6-1457
4v47_1_A0_1-2903
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4v47_1_A0_6-1460
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4v47_1_A0_1-2904
4v47_1_A0_6-1457
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1il2_1_D_1-72
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1asy_1_S_1-72
1asz_1_R_1-72
1asy_1_R_1-72
2ob7_1_A_10-319
2om7_1_C_1-96
2om7_1_C_1-130
1x1l_1_A_1-130
1zc8_1_Z_1-91
1zc8_1_Z_1-130
2ob7_1_D_1-130
1wz2_1_D_1-85
1wz2_1_C_1-85
6b19_1_C_1-73
6b19_1_C_3-101
5ndk_1_1G_20-55
5ndk_1_13_20-55
5ndj_1_1G_20-55
5ndj_1_13_20-55
1jgq_1_A_7-1515
1jgq_1_A_2-1520
1jgq_1_A_7-1518
1jgq_1_A_20-55
4v42_1_AA_7-1515
4v42_1_AA_2-1520
4v42_1_AA_7-1518
4v42_1_AA_20-55
1jgo_1_A_7-1515
1jgo_1_A_2-1520
1jgo_1_A_7-1518
1jgo_1_A_20-55
1jgp_1_A_7-1515
1jgp_1_A_2-1520
1jgp_1_A_7-1518
1jgp_1_A_20-55
1mms_1_C_1-58
1mms_1_D_1-58
1r2x_1_C_1-58
1r2w_1_C_1-58
1eg0_1_L_1-56
1eg0_1_L_1-57
6rxu_1_C2_588-2383
6rxu_1_C2_583-2388
6rxu_1_C2_588-2386
5oql_1_2_588-2383
5oql_1_2_583-2388
5oql_1_2_588-2386
6rxv_1_C2_588-2383
6rxv_1_C2_583-2388
6rxv_1_C2_588-2386
6rxz_1_C2_588-2383
6rxz_1_C2_583-2388
6rxz_1_C2_588-2386
6rxy_1_C2_588-2383
6rxy_1_C2_583-2388
6rxy_1_C2_588-2386
6rxt_1_C2_588-2383
6rxt_1_C2_583-2388
6rxt_1_C2_588-2386
4d61_1_j_1-199
4d5n_1_X_1-199
3k0j_1_F_2-86
4jxz_1_B_1-72
4jyz_1_B_1-72
3wqy_1_C_1-72
3wqz_1_C_1-72
1zc8_1_A_1-59
1mvr_1_D_1-59
4c9d_1_D_29-1
4c9d_1_C_29-1
4xej_1_BIRE_4-193
4xej_1_AIRE_4-193
1zn1_1_B_1-59
1n78_1_C_1-72
1n78_1_D_1-72
2dxi_1_C_1-72
1n77_1_C_1-72
2dxi_1_D_1-72
2cv2_1_C_1-72
1n77_1_D_1-72
2cv2_1_D_1-72
2cv1_1_D_1-72
2cv1_1_C_1-72
2cv0_1_C_1-72
2cv0_1_D_1-72
1g59_1_B_1-72
1g59_1_D_1-72
1emi_1_B_1-108
3iy9_1_A_498-1027
3j0o_1_2_1-112
3j0o_1_2_1-111
3j0l_1_2_1-112
3j0l_1_2_1-111
3j0p_1_2_1-112
3j0p_1_2_1-111
3j0q_1_2_1-112
3j0q_1_2_1-111
3ep2_1_B_1-50
3eq3_1_B_1-50
3eq4_1_B_1-50
3j0d_1_A_1-50
1gax_1_D_1-72
1gax_1_C_1-72
1ivs_1_C_1-72
1ivs_1_D_1-72
5it9_1_i_1-191
3pgw_1_R_1-164
3pgw_1_N_1-164
3cw1_1_x_1-138
3cw1_1_w_1-138
3cw1_1_V_1-138
3cw1_1_v_1-138
2ftc_1_R_792-1568
2ftc_1_R_81-1466
2ftc_1_R_1-1568
3j2c_1_O_1-144
3j2c_1_M_1-462
2dlc_1_Y_1-73
2iy3_1_B_9-105
2zue_1_B_1-75
2zuf_1_B_1-75
2d6f_1_F_1-72
2d6f_1_E_1-72
3jcr_1_N_1-106
3jcr_1_N_1-188
2vaz_1_A_64-177
5ool_1_A_747-1472
5ool_1_A_1-1454
5ool_1_A_771-1559
3j9m_1_A_747-1472
3j9m_1_A_1-1454
3j9m_1_A_771-1559
5oom_1_A_747-1472
5oom_1_A_1-1454
5oom_1_A_771-1559
3j7y_1_A_747-1472
3j7y_1_A_1-1454
3j7y_1_A_771-1559
6nu2_1_A_747-1472
6nu2_1_A_1-1381
6nu2_1_A_738-1472
6nu3_1_A_747-1472
6nu3_1_A_1-1381
6nu3_1_A_738-1472
5aka_1_7_1-74
1f7u_1_B_1-73
1f7v_1_B_1-73
2om7_1_I_1-58
2om7_1_J_1-102
1ysh_1_B_1-101
3iwn_1_B_1-91
3ndb_1_M_65-109
4xco_1_M_46-90
4xco_1_M_1-136
4xco_1_E_46-90
4xco_1_E_1-136
1z43_1_A_50-94
1z43_1_A_1-136
2v3c_1_N_46-90
2v3c_1_N_1-136
2v3c_1_M_46-90
2v3c_1_M_1-136
1lng_1_B_48-92
1lng_1_B_1-136
3j5s_1_B_1-101
3j5s_1_B_1-99
3j5s_1_A_1-360
3j45_1_5_1-108
3j46_1_4_2-109
3jcr_1_M_1-141
3jcr_1_M_1-107
3jcr_1_M_1-188
4v5z_1_B0_1-2902
4v5z_1_B0_1-2840
4v5z_1_B0_1-2899
3deg_1_G_1-70
5d8h_1_A_1-74
5g2x_1_A_595-692
5g2y_1_A_595-692
3j0o_1_h_1-111
3j0l_1_h_1-111
3j0p_1_h_1-111
3j0q_1_h_1-111
3iy8_1_A_1-540
1j1u_1_B_1-74
4v5z_1_BY_2-113
4v5z_1_BZ_1-70
4cxg_1_1_1-135
4cxh_1_1_1-135
4cxg_1_2_1-50
4cxh_1_2_1-50
4v8y_1_CN_1-87
1c0a_1_B_1-74
1j2b_1_C_1-74
1j2b_1_D_1-74
6d90_1_4_1-187
3j16_1_K_1-60
1mvr_1_B_1-96
4adx_1_0_132-2915
4adx_1_0_1-2923
4adx_1_9_1-121
2azx_1_D_1-72
2azx_1_C_1-72
3eq4_1_Y_1-69
2il9_1_A_2-142
2il9_1_M_2-142
4v92_1_AZ_1-184
3v7e_1_D_1-125
4v5z_1_AA_1-1563
4v5z_1_AA_1-1562
......
2du3_1_D_1-71
Could not find nucleotides of chain D in annotation 2du3.json. We expect a problem with 2du3 mmCIF download. Delete it and retry.
2du4_1_C_1-71
Could not find nucleotides of chain C in annotation 2du4.json. We expect a problem with 2du4 mmCIF download. Delete it and retry.
2du5_1_D_1-71
Could not find nucleotides of chain D in annotation 2du5.json. We expect a problem with 2du5 mmCIF download. Delete it and retry.
2du6_1_D_1-71
Could not find nucleotides of chain D in annotation 2du6.json. We expect a problem with 2du6 mmCIF download. Delete it and retry.
1ml5_1_a_151-2903
Could not find nucleotides of chain a in annotation 1ml5.json. We expect a problem with 1ml5 mmCIF download. Delete it and retry.
1ml5_1_a_1-2914
Could not find nucleotides of chain a in annotation 1ml5.json. We expect a problem with 1ml5 mmCIF download. Delete it and retry.
1ml5_1_b_5-121
Could not find nucleotides of chain b in annotation 1ml5.json. We expect a problem with 1ml5 mmCIF download. Delete it and retry.
1ml5_1_A_2-1520
Could not find nucleotides of chain A in annotation 1ml5.json. We expect a problem with 1ml5 mmCIF download. Delete it and retry.
1ml5_1_A_7-1518
Could not find nucleotides of chain A in annotation 1ml5.json. We expect a problem with 1ml5 mmCIF download. Delete it and retry.
1ml5_1_A_7-1515
Could not find nucleotides of chain A in annotation 1ml5.json. We expect a problem with 1ml5 mmCIF download. Delete it and retry.
5b63_1_D_1-74
Could not find nucleotides of chain D in annotation 5b63.json. We expect a problem with 5b63 mmCIF download. Delete it and retry.
5b63_1_B_1-74
Could not find nucleotides of chain B in annotation 5b63.json. We expect a problem with 5b63 mmCIF download. Delete it and retry.
5yyn_1_D_1-74
Could not find nucleotides of chain D in annotation 5yyn.json. We expect a problem with 5yyn mmCIF download. Delete it and retry.
5yyn_1_B_1-74
Could not find nucleotides of chain B in annotation 5yyn.json. We expect a problem with 5yyn mmCIF download. Delete it and retry.
6prv_1_A_1-58
Could not find nucleotides of chain A in annotation 6prv.json. We expect a problem with 6prv mmCIF download. Delete it and retry.
6prv_1_B_1-58
Could not find nucleotides of chain B in annotation 6prv.json. We expect a problem with 6prv mmCIF download. Delete it and retry.
6prv_1_C_1-58
Could not find nucleotides of chain C in annotation 6prv.json. We expect a problem with 6prv mmCIF download. Delete it and retry.
6prv_1_D_1-58
Could not find nucleotides of chain D in annotation 6prv.json. We expect a problem with 6prv mmCIF download. Delete it and retry.
1hc8_1_C_1-58
Could not find nucleotides of chain C in annotation 1hc8.json. We expect a problem with 1hc8 mmCIF download. Delete it and retry.
1hc8_1_D_1-58
Could not find nucleotides of chain D in annotation 1hc8.json. We expect a problem with 1hc8 mmCIF download. Delete it and retry.
1y39_1_C_1-58
Could not find nucleotides of chain C in annotation 1y39.json. We expect a problem with 1y39 mmCIF download. Delete it and retry.
1y39_1_D_1-58
Could not find nucleotides of chain D in annotation 1y39.json. We expect a problem with 1y39 mmCIF download. Delete it and retry.
1qa6_1_C_1-58
Could not find nucleotides of chain C in annotation 1qa6.json. We expect a problem with 1qa6 mmCIF download. Delete it and retry.
1qa6_1_D_1-58
Could not find nucleotides of chain D in annotation 1qa6.json. We expect a problem with 1qa6 mmCIF download. Delete it and retry.
2go5_1_9_3-88
Could not find nucleotides of chain 9 in annotation 2go5.json. We expect a problem with 2go5 mmCIF download. Delete it and retry.
3ds7_1_B_1-67
Could not find nucleotides of chain B in annotation 3ds7.json. We expect a problem with 3ds7 mmCIF download. Delete it and retry.
6qzp_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 6qzp.json. We expect a problem with 6qzp mmCIF download. Delete it and retry.
6ek0_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 6ek0.json. We expect a problem with 6ek0 mmCIF download. Delete it and retry.
6ole_1_D_1267-4755
Could not find nucleotides of chain D in annotation 6ole.json. We expect a problem with 6ole mmCIF download. Delete it and retry.
6om0_1_D_1267-4755
Could not find nucleotides of chain D in annotation 6om0.json. We expect a problem with 6om0 mmCIF download. Delete it and retry.
6y2l_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 6y2l.json. We expect a problem with 6y2l mmCIF download. Delete it and retry.
6y0g_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 6y0g.json. We expect a problem with 6y0g mmCIF download. Delete it and retry.
6oli_1_D_1267-4755
Could not find nucleotides of chain D in annotation 6oli.json. We expect a problem with 6oli mmCIF download. Delete it and retry.
6olg_1_A3_1267-4755
Could not find nucleotides of chain A3 in annotation 6olg.json. We expect a problem with 6olg mmCIF download. Delete it and retry.
6y57_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 6y57.json. We expect a problem with 6y57 mmCIF download. Delete it and retry.
5t2c_1_C_1267-4755
Could not find nucleotides of chain C in annotation 5t2c.json. We expect a problem with 5t2c mmCIF download. Delete it and retry.
6om7_1_D_1267-4755
Could not find nucleotides of chain D in annotation 6om7.json. We expect a problem with 6om7 mmCIF download. Delete it and retry.
4ug0_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 4ug0.json. We expect a problem with 4ug0 mmCIF download. Delete it and retry.
6olf_1_D_1267-4755
Could not find nucleotides of chain D in annotation 6olf.json. We expect a problem with 6olf mmCIF download. Delete it and retry.
6ip5_1_1C_1267-4755
Could not find nucleotides of chain 1C in annotation 6ip5.json. We expect a problem with 6ip5 mmCIF download. Delete it and retry.
6ip8_1_1C_1267-4755
Could not find nucleotides of chain 1C in annotation 6ip8.json. We expect a problem with 6ip8 mmCIF download. Delete it and retry.
6olz_1_A3_1267-4755
Could not find nucleotides of chain A3 in annotation 6olz.json. We expect a problem with 6olz mmCIF download. Delete it and retry.
5aj0_1_A3_1267-4755
Could not find nucleotides of chain A3 in annotation 5aj0.json. We expect a problem with 5aj0 mmCIF download. Delete it and retry.
5lks_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 5lks.json. We expect a problem with 5lks mmCIF download. Delete it and retry.
6ip6_1_1C_1267-4755
Could not find nucleotides of chain 1C in annotation 6ip6.json. We expect a problem with 6ip6 mmCIF download. Delete it and retry.
4v6x_1_A8_1267-4755
Could not find nucleotides of chain A8 in annotation 4v6x.json. We expect a problem with 4v6x mmCIF download. Delete it and retry.
4woi_1_BB_3-118
Could not find nucleotides of chain BB in annotation 4woi.json. We expect a problem with 4woi mmCIF download. Delete it and retry.
4woi_1_CB_3-118
Could not find nucleotides of chain CB in annotation 4woi.json. We expect a problem with 4woi mmCIF download. Delete it and retry.
2rdo_1_A_3-118
DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_A_3-118.
4v48_1_A9_3-118
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A9_3-118.
4v47_1_A9_3-118
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A9_3-118.
1vy7_1_AY_1-73
Sequence is too short. (< 5 resolved nts)
1vy7_1_CY_1-73
Sequence is too short. (< 5 resolved nts)
4w2h_1_CY_1-73
Sequence is too short. (< 5 resolved nts)
2z9q_1_A_1-72
DSSR warning 2z9q.json: no nucleotides found. Ignoring 2z9q_1_A_1-72.
4v42_1_BB_5-121
Could not find nucleotides of chain BB in annotation 4v42.json. We expect a problem with 4v42 mmCIF download. Delete it and retry.
1ls2_1_B_1-73
DSSR warning 1ls2.json: no nucleotides found. Ignoring 1ls2_1_B_1-73.
3u4m_1_B_1-80
Could not find nucleotides of chain B in annotation 3u4m.json. We expect a problem with 3u4m mmCIF download. Delete it and retry.
4qvi_1_B_1-80
Could not find nucleotides of chain B in annotation 4qvi.json. We expect a problem with 4qvi mmCIF download. Delete it and retry.
3umy_1_B_1-80
Could not find nucleotides of chain B in annotation 3umy.json. We expect a problem with 3umy mmCIF download. Delete it and retry.
4qg3_1_B_1-80
Could not find nucleotides of chain B in annotation 4qg3.json. We expect a problem with 4qg3 mmCIF download. Delete it and retry.
3u56_1_B_1-80
Could not find nucleotides of chain B in annotation 3u56.json. We expect a problem with 3u56 mmCIF download. Delete it and retry.
3ep2_1_Y_1-72
DSSR warning 3ep2.json: no nucleotides found. Ignoring 3ep2_1_Y_1-72.
3eq3_1_Y_1-72
DSSR warning 3eq3.json: no nucleotides found. Ignoring 3eq3_1_Y_1-72.
4v48_1_A6_1-73
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A6_1-73.
2qex_1_9_1-121
Could not find nucleotides of chain 9 in annotation 2qex.json. We expect a problem with 2qex mmCIF download. Delete it and retry.
2otl_1_9_1-121
Could not find nucleotides of chain 9 in annotation 2otl.json. We expect a problem with 2otl mmCIF download. Delete it and retry.
2otj_1_9_1-121
Could not find nucleotides of chain 9 in annotation 2otj.json. We expect a problem with 2otj mmCIF download. Delete it and retry.
1kqs_1_9_1-121
Could not find nucleotides of chain 9 in annotation 1kqs.json. We expect a problem with 1kqs mmCIF download. Delete it and retry.
3ow2_1_9_1-121
Could not find nucleotides of chain 9 in annotation 3ow2.json. We expect a problem with 3ow2 mmCIF download. Delete it and retry.
1vq8_1_9_1-121
Could not find nucleotides of chain 9 in annotation 1vq8.json. We expect a problem with 1vq8 mmCIF download. Delete it and retry.
1vqo_1_9_1-121
Could not find nucleotides of chain 9 in annotation 1vqo.json. We expect a problem with 1vqo mmCIF download. Delete it and retry.
1vqk_1_9_1-121
Could not find nucleotides of chain 9 in annotation 1vqk.json. We expect a problem with 1vqk mmCIF download. Delete it and retry.
1vq9_1_9_1-121
Could not find nucleotides of chain 9 in annotation 1vq9.json. We expect a problem with 1vq9 mmCIF download. Delete it and retry.
1vqp_1_9_1-121
Could not find nucleotides of chain 9 in annotation 1vqp.json. We expect a problem with 1vqp mmCIF download. Delete it and retry.
1vq7_1_9_1-121
Could not find nucleotides of chain 9 in annotation 1vq7.json. We expect a problem with 1vq7 mmCIF download. Delete it and retry.
1vqn_1_9_1-121
Could not find nucleotides of chain 9 in annotation 1vqn.json. We expect a problem with 1vqn mmCIF download. Delete it and retry.
1vq4_1_9_1-121
Could not find nucleotides of chain 9 in annotation 1vq4.json. We expect a problem with 1vq4 mmCIF download. Delete it and retry.
1vq6_1_9_1-121
Could not find nucleotides of chain 9 in annotation 1vq6.json. We expect a problem with 1vq6 mmCIF download. Delete it and retry.
1m90_1_B_1-121
Could not find nucleotides of chain B in annotation 1m90.json. We expect a problem with 1m90 mmCIF download. Delete it and retry.
1qvg_1_9_1-121
Could not find nucleotides of chain 9 in annotation 1qvg.json. We expect a problem with 1qvg mmCIF download. Delete it and retry.
1vq5_1_9_1-121
Could not find nucleotides of chain 9 in annotation 1vq5.json. We expect a problem with 1vq5 mmCIF download. Delete it and retry.
1nji_1_B_1-121
Could not find nucleotides of chain B in annotation 1nji.json. We expect a problem with 1nji mmCIF download. Delete it and retry.
3cxc_1_9_1-121
Could not find nucleotides of chain 9 in annotation 3cxc.json. We expect a problem with 3cxc mmCIF download. Delete it and retry.
3cpw_1_9_1-121
Could not find nucleotides of chain 9 in annotation 3cpw.json. We expect a problem with 3cpw mmCIF download. Delete it and retry.
1q81_1_B_1-121
Could not find nucleotides of chain B in annotation 1q81.json. We expect a problem with 1q81 mmCIF download. Delete it and retry.
1q86_1_B_1-121
Could not find nucleotides of chain B in annotation 1q86.json. We expect a problem with 1q86 mmCIF download. Delete it and retry.
1kc8_1_B_1-121
Could not find nucleotides of chain B in annotation 1kc8.json. We expect a problem with 1kc8 mmCIF download. Delete it and retry.
1k73_1_B_1-121
Could not find nucleotides of chain B in annotation 1k73.json. We expect a problem with 1k73 mmCIF download. Delete it and retry.
1q82_1_B_1-121
Could not find nucleotides of chain B in annotation 1q82.json. We expect a problem with 1q82 mmCIF download. Delete it and retry.
1k9m_1_B_1-121
Could not find nucleotides of chain B in annotation 1k9m.json. We expect a problem with 1k9m mmCIF download. Delete it and retry.
1qvf_1_9_1-121
Could not find nucleotides of chain 9 in annotation 1qvf.json. We expect a problem with 1qvf mmCIF download. Delete it and retry.
1m1k_1_B_1-121
Could not find nucleotides of chain B in annotation 1m1k.json. We expect a problem with 1m1k mmCIF download. Delete it and retry.
1kd1_1_B_1-121
Could not find nucleotides of chain B in annotation 1kd1.json. We expect a problem with 1kd1 mmCIF download. Delete it and retry.
1k8a_1_B_1-121
Could not find nucleotides of chain B in annotation 1k8a.json. We expect a problem with 1k8a mmCIF download. Delete it and retry.
1q7y_1_B_1-121
Could not find nucleotides of chain B in annotation 1q7y.json. We expect a problem with 1q7y mmCIF download. Delete it and retry.
1n8r_1_B_1-121
Could not find nucleotides of chain B in annotation 1n8r.json. We expect a problem with 1n8r mmCIF download. Delete it and retry.
1eg0_1_O_1-73
DSSR warning 1eg0.json: no nucleotides found. Ignoring 1eg0_1_O_1-73.
1qtq_1_B_1-72
Could not find nucleotides of chain B in annotation 1qtq.json. We expect a problem with 1qtq mmCIF download. Delete it and retry.
4jxx_1_B_1-72
Could not find nucleotides of chain B in annotation 4jxx.json. We expect a problem with 4jxx mmCIF download. Delete it and retry.
1zjw_1_B_1-72
Could not find nucleotides of chain B in annotation 1zjw.json. We expect a problem with 1zjw mmCIF download. Delete it and retry.
1euy_1_B_1-71
Could not find nucleotides of chain B in annotation 1euy.json. We expect a problem with 1euy mmCIF download. Delete it and retry.
1euq_1_B_1-69
Could not find nucleotides of chain B in annotation 1euq.json. We expect a problem with 1euq mmCIF download. Delete it and retry.
2rd2_1_B_1-72
Could not find nucleotides of chain B in annotation 2rd2.json. We expect a problem with 2rd2 mmCIF download. Delete it and retry.
2re8_1_B_1-72
Could not find nucleotides of chain B in annotation 2re8.json. We expect a problem with 2re8 mmCIF download. Delete it and retry.
1gsg_1_T_1-72
DSSR warning for 1gsg_1_T_1-72: no nucleotides found
DSSR warning 1gsg.json: no nucleotides found. Ignoring 1gsg_1_T_1-72.
1o0c_1_B_1-72
Could not find nucleotides of chain B in annotation 1o0c.json. We expect a problem with 1o0c mmCIF download. Delete it and retry.
1o0b_1_B_1-72
Could not find nucleotides of chain B in annotation 1o0b.json. We expect a problem with 1o0b mmCIF download. Delete it and retry.
1exd_1_B_1-70
Could not find nucleotides of chain B in annotation 1exd.json. We expect a problem with 1exd mmCIF download. Delete it and retry.
1fg0_1_A_1-602
Could not find nucleotides of chain A in annotation 1fg0.json. We expect a problem with 1fg0 mmCIF download. Delete it and retry.
1ffz_1_A_1-602
Could not find nucleotides of chain A in annotation 1ffz.json. We expect a problem with 1ffz mmCIF download. Delete it and retry.
3ktv_1_C_2-106
Could not find nucleotides of chain C in annotation 3ktv.json. We expect a problem with 3ktv mmCIF download. Delete it and retry.
3ktv_1_A_2-106
Could not find nucleotides of chain A in annotation 3ktv.json. We expect a problem with 3ktv mmCIF download. Delete it and retry.
3jcr_1_H_1-115
DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_H_1-115.
6d9j_1_4_1-187
Could not find nucleotides of chain 4 in annotation 6d9j.json. We expect a problem with 6d9j mmCIF download. Delete it and retry.
4v42_1_BA_151-2903
Could not find nucleotides of chain BA in annotation 4v42.json. We expect a problem with 4v42 mmCIF download. Delete it and retry.
4v42_1_BA_1-2914
Could not find nucleotides of chain BA in annotation 4v42.json. We expect a problem with 4v42 mmCIF download. Delete it and retry.
3moj_1_A_1-73
Could not find nucleotides of chain A in annotation 3moj.json. We expect a problem with 3moj mmCIF download. Delete it and retry.
4v48_1_BA_1-91
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_1-91.
4v48_1_BA_6-1538
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_6-1538.
4v48_1_BA_1-1543
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_1-1543.
4v48_1_BA_6-1541
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_6-1541.
4v47_1_BA_1-91
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_1-91.
4v47_1_BA_6-1537
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_6-1537.
4v47_1_BA_1-1542
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_1-1542.
4v47_1_BA_6-1540
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_6-1540.
5u4j_1_A_6-1522
Could not find nucleotides of chain A in annotation 5u4j.json. We expect a problem with 5u4j mmCIF download. Delete it and retry.
5u4j_1_A_1-1528
Could not find nucleotides of chain A in annotation 5u4j.json. We expect a problem with 5u4j mmCIF download. Delete it and retry.
5u4j_1_A_6-1460
Could not find nucleotides of chain A in annotation 5u4j.json. We expect a problem with 5u4j mmCIF download. Delete it and retry.
5u4j_1_A_6-1457
Could not find nucleotides of chain A in annotation 5u4j.json. We expect a problem with 5u4j mmCIF download. Delete it and retry.
2rdo_1_B_1-2903
DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_1-2903.
2rdo_1_B_6-1522
DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_6-1522.
2rdo_1_B_1-1528
DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_1-1528.
2rdo_1_B_6-1460
DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_6-1460.
2rdo_1_B_160-2893
DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_160-2893.
2rdo_1_B_1-2904
DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_1-2904.
2rdo_1_B_6-1457
DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_6-1457.
4v48_1_A0_1-2903
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_1-2903.
4v48_1_A0_6-1522
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_6-1522.
4v48_1_A0_1-1528
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_1-1528.
4v48_1_A0_6-1460
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_6-1460.
4v48_1_A0_160-2893
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_160-2893.
4v48_1_A0_1-2904
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_1-2904.
4v48_1_A0_6-1457
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_6-1457.
4v47_1_A0_1-2903
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_1-2903.
4v47_1_A0_6-1522
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_6-1522.
4v47_1_A0_1-1528
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_1-1528.
4v47_1_A0_6-1460
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_6-1460.
4v47_1_A0_160-2893
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_160-2893.
4v47_1_A0_1-2904
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_1-2904.
4v47_1_A0_6-1457
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_6-1457.
1il2_1_C_1-72
Could not find nucleotides of chain C in annotation 1il2.json. We expect a problem with 1il2 mmCIF download. Delete it and retry.
1il2_1_D_1-72
Could not find nucleotides of chain D in annotation 1il2.json. We expect a problem with 1il2 mmCIF download. Delete it and retry.
1asz_1_S_1-72
Could not find nucleotides of chain S in annotation 1asz.json. We expect a problem with 1asz mmCIF download. Delete it and retry.
1asy_1_S_1-72
Could not find nucleotides of chain S in annotation 1asy.json. We expect a problem with 1asy mmCIF download. Delete it and retry.
1asz_1_R_1-72
Could not find nucleotides of chain R in annotation 1asz.json. We expect a problem with 1asz mmCIF download. Delete it and retry.
1asy_1_R_1-72
Could not find nucleotides of chain R in annotation 1asy.json. We expect a problem with 1asy mmCIF download. Delete it and retry.
2ob7_1_A_10-319
DSSR warning 2ob7.json: no nucleotides found. Ignoring 2ob7_1_A_10-319.
2om7_1_C_1-96
Could not find nucleotides of chain C in annotation 2om7.json. We expect a problem with 2om7 mmCIF download. Delete it and retry.
2om7_1_C_1-130
Could not find nucleotides of chain C in annotation 2om7.json. We expect a problem with 2om7 mmCIF download. Delete it and retry.
1x1l_1_A_1-130
DSSR warning 1x1l.json: no nucleotides found. Ignoring 1x1l_1_A_1-130.
1zc8_1_Z_1-91
DSSR warning 1zc8.json: no nucleotides found. Ignoring 1zc8_1_Z_1-91.
1zc8_1_Z_1-130
DSSR warning 1zc8.json: no nucleotides found. Ignoring 1zc8_1_Z_1-130.
2ob7_1_D_1-130
DSSR warning 2ob7.json: no nucleotides found. Ignoring 2ob7_1_D_1-130.
1wz2_1_D_1-85
Could not find nucleotides of chain D in annotation 1wz2.json. We expect a problem with 1wz2 mmCIF download. Delete it and retry.
1wz2_1_C_1-85
Could not find nucleotides of chain C in annotation 1wz2.json. We expect a problem with 1wz2 mmCIF download. Delete it and retry.
6b19_1_C_1-73
Could not find nucleotides of chain C in annotation 6b19.json. We expect a problem with 6b19 mmCIF download. Delete it and retry.
6b19_1_C_3-101
Could not find nucleotides of chain C in annotation 6b19.json. We expect a problem with 6b19 mmCIF download. Delete it and retry.
5ndk_1_1G_20-55
Could not find nucleotides of chain 1G in annotation 5ndk.json. We expect a problem with 5ndk mmCIF download. Delete it and retry.
5ndk_1_13_20-55
Could not find nucleotides of chain 13 in annotation 5ndk.json. We expect a problem with 5ndk mmCIF download. Delete it and retry.
5ndj_1_1G_20-55
Could not find nucleotides of chain 1G in annotation 5ndj.json. We expect a problem with 5ndj mmCIF download. Delete it and retry.
5ndj_1_13_20-55
Could not find nucleotides of chain 13 in annotation 5ndj.json. We expect a problem with 5ndj mmCIF download. Delete it and retry.
1jgq_1_A_7-1515
Could not find nucleotides of chain A in annotation 1jgq.json. We expect a problem with 1jgq mmCIF download. Delete it and retry.
1jgq_1_A_2-1520
Could not find nucleotides of chain A in annotation 1jgq.json. We expect a problem with 1jgq mmCIF download. Delete it and retry.
1jgq_1_A_7-1518
Could not find nucleotides of chain A in annotation 1jgq.json. We expect a problem with 1jgq mmCIF download. Delete it and retry.
1jgq_1_A_20-55
Could not find nucleotides of chain A in annotation 1jgq.json. We expect a problem with 1jgq mmCIF download. Delete it and retry.
4v42_1_AA_7-1515
Could not find nucleotides of chain AA in annotation 4v42.json. We expect a problem with 4v42 mmCIF download. Delete it and retry.
4v42_1_AA_2-1520
Could not find nucleotides of chain AA in annotation 4v42.json. We expect a problem with 4v42 mmCIF download. Delete it and retry.
4v42_1_AA_7-1518
Could not find nucleotides of chain AA in annotation 4v42.json. We expect a problem with 4v42 mmCIF download. Delete it and retry.
4v42_1_AA_20-55
Could not find nucleotides of chain AA in annotation 4v42.json. We expect a problem with 4v42 mmCIF download. Delete it and retry.
1jgo_1_A_7-1515
Could not find nucleotides of chain A in annotation 1jgo.json. We expect a problem with 1jgo mmCIF download. Delete it and retry.
1jgo_1_A_2-1520
Could not find nucleotides of chain A in annotation 1jgo.json. We expect a problem with 1jgo mmCIF download. Delete it and retry.
1jgo_1_A_7-1518
Could not find nucleotides of chain A in annotation 1jgo.json. We expect a problem with 1jgo mmCIF download. Delete it and retry.
1jgo_1_A_20-55
Could not find nucleotides of chain A in annotation 1jgo.json. We expect a problem with 1jgo mmCIF download. Delete it and retry.
1jgp_1_A_7-1515
Could not find nucleotides of chain A in annotation 1jgp.json. We expect a problem with 1jgp mmCIF download. Delete it and retry.
1jgp_1_A_2-1520
Could not find nucleotides of chain A in annotation 1jgp.json. We expect a problem with 1jgp mmCIF download. Delete it and retry.
1jgp_1_A_7-1518
Could not find nucleotides of chain A in annotation 1jgp.json. We expect a problem with 1jgp mmCIF download. Delete it and retry.
1jgp_1_A_20-55
Could not find nucleotides of chain A in annotation 1jgp.json. We expect a problem with 1jgp mmCIF download. Delete it and retry.
1mms_1_C_1-58
Could not find nucleotides of chain C in annotation 1mms.json. We expect a problem with 1mms mmCIF download. Delete it and retry.
1mms_1_D_1-58
Could not find nucleotides of chain D in annotation 1mms.json. We expect a problem with 1mms mmCIF download. Delete it and retry.
1r2x_1_C_1-58
DSSR warning 1r2x.json: no nucleotides found. Ignoring 1r2x_1_C_1-58.
1r2w_1_C_1-58
DSSR warning 1r2w.json: no nucleotides found. Ignoring 1r2w_1_C_1-58.
1eg0_1_L_1-56
DSSR warning 1eg0.json: no nucleotides found. Ignoring 1eg0_1_L_1-56.
1eg0_1_L_1-57
DSSR warning 1eg0.json: no nucleotides found. Ignoring 1eg0_1_L_1-57.
6rxu_1_C2_588-2383
Could not find nucleotides of chain C2 in annotation 6rxu.json. We expect a problem with 6rxu mmCIF download. Delete it and retry.
6rxu_1_C2_583-2388
Could not find nucleotides of chain C2 in annotation 6rxu.json. We expect a problem with 6rxu mmCIF download. Delete it and retry.
6rxu_1_C2_588-2386
Could not find nucleotides of chain C2 in annotation 6rxu.json. We expect a problem with 6rxu mmCIF download. Delete it and retry.
5oql_1_2_588-2383
Could not find nucleotides of chain 2 in annotation 5oql.json. We expect a problem with 5oql mmCIF download. Delete it and retry.
5oql_1_2_583-2388
Could not find nucleotides of chain 2 in annotation 5oql.json. We expect a problem with 5oql mmCIF download. Delete it and retry.
5oql_1_2_588-2386
Could not find nucleotides of chain 2 in annotation 5oql.json. We expect a problem with 5oql mmCIF download. Delete it and retry.
6rxv_1_C2_588-2383
Could not find nucleotides of chain C2 in annotation 6rxv.json. We expect a problem with 6rxv mmCIF download. Delete it and retry.
6rxv_1_C2_583-2388
Could not find nucleotides of chain C2 in annotation 6rxv.json. We expect a problem with 6rxv mmCIF download. Delete it and retry.
6rxv_1_C2_588-2386
Could not find nucleotides of chain C2 in annotation 6rxv.json. We expect a problem with 6rxv mmCIF download. Delete it and retry.
6rxz_1_C2_588-2383
Could not find nucleotides of chain C2 in annotation 6rxz.json. We expect a problem with 6rxz mmCIF download. Delete it and retry.
6rxz_1_C2_583-2388
Could not find nucleotides of chain C2 in annotation 6rxz.json. We expect a problem with 6rxz mmCIF download. Delete it and retry.
6rxz_1_C2_588-2386
Could not find nucleotides of chain C2 in annotation 6rxz.json. We expect a problem with 6rxz mmCIF download. Delete it and retry.
6rxy_1_C2_588-2383
Could not find nucleotides of chain C2 in annotation 6rxy.json. We expect a problem with 6rxy mmCIF download. Delete it and retry.
6rxy_1_C2_583-2388
Could not find nucleotides of chain C2 in annotation 6rxy.json. We expect a problem with 6rxy mmCIF download. Delete it and retry.
6rxy_1_C2_588-2386
Could not find nucleotides of chain C2 in annotation 6rxy.json. We expect a problem with 6rxy mmCIF download. Delete it and retry.
6rxt_1_C2_588-2383
Could not find nucleotides of chain C2 in annotation 6rxt.json. We expect a problem with 6rxt mmCIF download. Delete it and retry.
6rxt_1_C2_583-2388
Could not find nucleotides of chain C2 in annotation 6rxt.json. We expect a problem with 6rxt mmCIF download. Delete it and retry.
6rxt_1_C2_588-2386
Could not find nucleotides of chain C2 in annotation 6rxt.json. We expect a problem with 6rxt mmCIF download. Delete it and retry.
4d61_1_j_1-199
Could not find nucleotides of chain j in annotation 4d61.json. We expect a problem with 4d61 mmCIF download. Delete it and retry.
4d5n_1_X_1-199
Could not find nucleotides of chain X in annotation 4d5n.json. We expect a problem with 4d5n mmCIF download. Delete it and retry.
3k0j_1_F_2-86
Could not find nucleotides of chain F in annotation 3k0j.json. We expect a problem with 3k0j mmCIF download. Delete it and retry.
4jxz_1_B_1-72
Could not find nucleotides of chain B in annotation 4jxz.json. We expect a problem with 4jxz mmCIF download. Delete it and retry.
4jyz_1_B_1-72
Could not find nucleotides of chain B in annotation 4jyz.json. We expect a problem with 4jyz mmCIF download. Delete it and retry.
3wqy_1_C_1-72
Could not find nucleotides of chain C in annotation 3wqy.json. We expect a problem with 3wqy mmCIF download. Delete it and retry.
3wqz_1_C_1-72
Could not find nucleotides of chain C in annotation 3wqz.json. We expect a problem with 3wqz mmCIF download. Delete it and retry.
1zc8_1_A_1-59
DSSR warning 1zc8.json: no nucleotides found. Ignoring 1zc8_1_A_1-59.
1mvr_1_D_1-59
DSSR warning 1mvr.json: no nucleotides found. Ignoring 1mvr_1_D_1-59.
4c9d_1_D_29-1
Could not find nucleotides of chain D in annotation 4c9d.json. We expect a problem with 4c9d mmCIF download. Delete it and retry.
4c9d_1_C_29-1
Could not find nucleotides of chain C in annotation 4c9d.json. We expect a problem with 4c9d mmCIF download. Delete it and retry.
4xej_1_BIRE_4-193
Could not find nucleotides of chain BIRE in annotation 4xej.json. We expect a problem with 4xej mmCIF download. Delete it and retry.
4xej_1_AIRE_4-193
Could not find nucleotides of chain AIRE in annotation 4xej.json. We expect a problem with 4xej mmCIF download. Delete it and retry.
1zn1_1_B_1-59
DSSR warning 1zn1.json: no nucleotides found. Ignoring 1zn1_1_B_1-59.
1n78_1_C_1-72
Could not find nucleotides of chain C in annotation 1n78.json. We expect a problem with 1n78 mmCIF download. Delete it and retry.
1n78_1_D_1-72
Could not find nucleotides of chain D in annotation 1n78.json. We expect a problem with 1n78 mmCIF download. Delete it and retry.
2dxi_1_C_1-72
Could not find nucleotides of chain C in annotation 2dxi.json. We expect a problem with 2dxi mmCIF download. Delete it and retry.
1n77_1_C_1-72
Could not find nucleotides of chain C in annotation 1n77.json. We expect a problem with 1n77 mmCIF download. Delete it and retry.
2dxi_1_D_1-72
Could not find nucleotides of chain D in annotation 2dxi.json. We expect a problem with 2dxi mmCIF download. Delete it and retry.
2cv2_1_C_1-72
Could not find nucleotides of chain C in annotation 2cv2.json. We expect a problem with 2cv2 mmCIF download. Delete it and retry.
1n77_1_D_1-72
Could not find nucleotides of chain D in annotation 1n77.json. We expect a problem with 1n77 mmCIF download. Delete it and retry.
2cv2_1_D_1-72
Could not find nucleotides of chain D in annotation 2cv2.json. We expect a problem with 2cv2 mmCIF download. Delete it and retry.
2cv1_1_D_1-72
Could not find nucleotides of chain D in annotation 2cv1.json. We expect a problem with 2cv1 mmCIF download. Delete it and retry.
2cv1_1_C_1-72
Could not find nucleotides of chain C in annotation 2cv1.json. We expect a problem with 2cv1 mmCIF download. Delete it and retry.
2cv0_1_C_1-72
Could not find nucleotides of chain C in annotation 2cv0.json. We expect a problem with 2cv0 mmCIF download. Delete it and retry.
2cv0_1_D_1-72
Could not find nucleotides of chain D in annotation 2cv0.json. We expect a problem with 2cv0 mmCIF download. Delete it and retry.
1g59_1_B_1-72
Could not find nucleotides of chain B in annotation 1g59.json. We expect a problem with 1g59 mmCIF download. Delete it and retry.
1g59_1_D_1-72
Could not find nucleotides of chain D in annotation 1g59.json. We expect a problem with 1g59 mmCIF download. Delete it and retry.
1emi_1_B_1-108
DSSR warning 1emi.json: no nucleotides found. Ignoring 1emi_1_B_1-108.
3iy9_1_A_498-1027
DSSR warning 3iy9.json: no nucleotides found. Ignoring 3iy9_1_A_498-1027.
3j0o_1_2_1-112
Could not find nucleotides of chain 2 in annotation 3j0o.json. We expect a problem with 3j0o mmCIF download. Delete it and retry.
3j0o_1_2_1-111
Could not find nucleotides of chain 2 in annotation 3j0o.json. We expect a problem with 3j0o mmCIF download. Delete it and retry.
3j0l_1_2_1-112
Could not find nucleotides of chain 2 in annotation 3j0l.json. We expect a problem with 3j0l mmCIF download. Delete it and retry.
3j0l_1_2_1-111
Could not find nucleotides of chain 2 in annotation 3j0l.json. We expect a problem with 3j0l mmCIF download. Delete it and retry.
3j0p_1_2_1-112
Could not find nucleotides of chain 2 in annotation 3j0p.json. We expect a problem with 3j0p mmCIF download. Delete it and retry.
3j0p_1_2_1-111
Could not find nucleotides of chain 2 in annotation 3j0p.json. We expect a problem with 3j0p mmCIF download. Delete it and retry.
3j0q_1_2_1-112
Could not find nucleotides of chain 2 in annotation 3j0q.json. We expect a problem with 3j0q mmCIF download. Delete it and retry.
3j0q_1_2_1-111
Could not find nucleotides of chain 2 in annotation 3j0q.json. We expect a problem with 3j0q mmCIF download. Delete it and retry.
3ep2_1_B_1-50
DSSR warning 3ep2.json: no nucleotides found. Ignoring 3ep2_1_B_1-50.
3eq3_1_B_1-50
DSSR warning 3eq3.json: no nucleotides found. Ignoring 3eq3_1_B_1-50.
3eq4_1_B_1-50
DSSR warning 3eq4.json: no nucleotides found. Ignoring 3eq4_1_B_1-50.
3j0d_1_A_1-50
Could not find nucleotides of chain A in annotation 3j0d.json. We expect a problem with 3j0d mmCIF download. Delete it and retry.
1gax_1_D_1-72
Could not find nucleotides of chain D in annotation 1gax.json. We expect a problem with 1gax mmCIF download. Delete it and retry.
1gax_1_C_1-72
Could not find nucleotides of chain C in annotation 1gax.json. We expect a problem with 1gax mmCIF download. Delete it and retry.
1ivs_1_C_1-72
Could not find nucleotides of chain C in annotation 1ivs.json. We expect a problem with 1ivs mmCIF download. Delete it and retry.
1ivs_1_D_1-72
Could not find nucleotides of chain D in annotation 1ivs.json. We expect a problem with 1ivs mmCIF download. Delete it and retry.
5it9_1_i_1-191
Could not find nucleotides of chain i in annotation 5it9.json. We expect a problem with 5it9 mmCIF download. Delete it and retry.
3pgw_1_R_1-164
DSSR warning 3pgw.json: no nucleotides found. Ignoring 3pgw_1_R_1-164.
3pgw_1_N_1-164
DSSR warning 3pgw.json: no nucleotides found. Ignoring 3pgw_1_N_1-164.
3cw1_1_x_1-138
DSSR warning 3cw1.json: no nucleotides found. Ignoring 3cw1_1_x_1-138.
3cw1_1_w_1-138
DSSR warning 3cw1.json: no nucleotides found. Ignoring 3cw1_1_w_1-138.
3cw1_1_V_1-138
DSSR warning 3cw1.json: no nucleotides found. Ignoring 3cw1_1_V_1-138.
3cw1_1_v_1-138
DSSR warning 3cw1.json: no nucleotides found. Ignoring 3cw1_1_v_1-138.
2ftc_1_R_792-1568
DSSR warning 2ftc.json: no nucleotides found. Ignoring 2ftc_1_R_792-1568.
2ftc_1_R_81-1466
DSSR warning 2ftc.json: no nucleotides found. Ignoring 2ftc_1_R_81-1466.
2ftc_1_R_1-1568
DSSR warning 2ftc.json: no nucleotides found. Ignoring 2ftc_1_R_1-1568.
3j2c_1_O_1-144
Could not find nucleotides of chain O in annotation 3j2c.json. We expect a problem with 3j2c mmCIF download. Delete it and retry.
3j2c_1_M_1-462
Could not find nucleotides of chain M in annotation 3j2c.json. We expect a problem with 3j2c mmCIF download. Delete it and retry.
2dlc_1_Y_1-73
Could not find nucleotides of chain Y in annotation 2dlc.json. We expect a problem with 2dlc mmCIF download. Delete it and retry.
2iy3_1_B_9-105
DSSR warning 2iy3.json: no nucleotides found. Ignoring 2iy3_1_B_9-105.
2zue_1_B_1-75
Could not find nucleotides of chain B in annotation 2zue.json. We expect a problem with 2zue mmCIF download. Delete it and retry.
2zuf_1_B_1-75
Could not find nucleotides of chain B in annotation 2zuf.json. We expect a problem with 2zuf mmCIF download. Delete it and retry.
2d6f_1_F_1-72
Could not find nucleotides of chain F in annotation 2d6f.json. We expect a problem with 2d6f mmCIF download. Delete it and retry.
2d6f_1_E_1-72
Could not find nucleotides of chain E in annotation 2d6f.json. We expect a problem with 2d6f mmCIF download. Delete it and retry.
3jcr_1_N_1-106
DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_N_1-106.
3jcr_1_N_1-188
DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_N_1-188.
2vaz_1_A_64-177
DSSR warning 2vaz.json: no nucleotides found. Ignoring 2vaz_1_A_64-177.
5ool_1_A_747-1472
Could not find nucleotides of chain A in annotation 5ool.json. We expect a problem with 5ool mmCIF download. Delete it and retry.
5ool_1_A_1-1454
Could not find nucleotides of chain A in annotation 5ool.json. We expect a problem with 5ool mmCIF download. Delete it and retry.
5ool_1_A_771-1559
Could not find nucleotides of chain A in annotation 5ool.json. We expect a problem with 5ool mmCIF download. Delete it and retry.
3j9m_1_A_747-1472
Could not find nucleotides of chain A in annotation 3j9m.json. We expect a problem with 3j9m mmCIF download. Delete it and retry.
3j9m_1_A_1-1454
Could not find nucleotides of chain A in annotation 3j9m.json. We expect a problem with 3j9m mmCIF download. Delete it and retry.
3j9m_1_A_771-1559
Could not find nucleotides of chain A in annotation 3j9m.json. We expect a problem with 3j9m mmCIF download. Delete it and retry.
5oom_1_A_747-1472
Could not find nucleotides of chain A in annotation 5oom.json. We expect a problem with 5oom mmCIF download. Delete it and retry.
5oom_1_A_1-1454
Could not find nucleotides of chain A in annotation 5oom.json. We expect a problem with 5oom mmCIF download. Delete it and retry.
5oom_1_A_771-1559
Could not find nucleotides of chain A in annotation 5oom.json. We expect a problem with 5oom mmCIF download. Delete it and retry.
3j7y_1_A_747-1472
Could not find nucleotides of chain A in annotation 3j7y.json. We expect a problem with 3j7y mmCIF download. Delete it and retry.
3j7y_1_A_1-1454
Could not find nucleotides of chain A in annotation 3j7y.json. We expect a problem with 3j7y mmCIF download. Delete it and retry.
3j7y_1_A_771-1559
Could not find nucleotides of chain A in annotation 3j7y.json. We expect a problem with 3j7y mmCIF download. Delete it and retry.
6nu2_1_A_747-1472
Could not find nucleotides of chain A in annotation 6nu2.json. We expect a problem with 6nu2 mmCIF download. Delete it and retry.
6nu2_1_A_1-1381
Could not find nucleotides of chain A in annotation 6nu2.json. We expect a problem with 6nu2 mmCIF download. Delete it and retry.
6nu2_1_A_738-1472
Could not find nucleotides of chain A in annotation 6nu2.json. We expect a problem with 6nu2 mmCIF download. Delete it and retry.
6nu3_1_A_747-1472
Could not find nucleotides of chain A in annotation 6nu3.json. We expect a problem with 6nu3 mmCIF download. Delete it and retry.
6nu3_1_A_1-1381
Could not find nucleotides of chain A in annotation 6nu3.json. We expect a problem with 6nu3 mmCIF download. Delete it and retry.
6nu3_1_A_738-1472
Could not find nucleotides of chain A in annotation 6nu3.json. We expect a problem with 6nu3 mmCIF download. Delete it and retry.
5aka_1_7_1-74
Could not find nucleotides of chain 7 in annotation 5aka.json. We expect a problem with 5aka mmCIF download. Delete it and retry.
1f7u_1_B_1-73
Could not find nucleotides of chain B in annotation 1f7u.json. We expect a problem with 1f7u mmCIF download. Delete it and retry.
1f7v_1_B_1-73
Could not find nucleotides of chain B in annotation 1f7v.json. We expect a problem with 1f7v mmCIF download. Delete it and retry.
2om7_1_I_1-58
Could not find nucleotides of chain I in annotation 2om7.json. We expect a problem with 2om7 mmCIF download. Delete it and retry.
2om7_1_J_1-102
Could not find nucleotides of chain J in annotation 2om7.json. We expect a problem with 2om7 mmCIF download. Delete it and retry.
1ysh_1_B_1-101
Could not find nucleotides of chain B in annotation 1ysh.json. We expect a problem with 1ysh mmCIF download. Delete it and retry.
3iwn_1_B_1-91
Could not find nucleotides of chain B in annotation 3iwn.json. We expect a problem with 3iwn mmCIF download. Delete it and retry.
3ndb_1_M_65-109
Could not find nucleotides of chain M in annotation 3ndb.json. We expect a problem with 3ndb mmCIF download. Delete it and retry.
4xco_1_M_46-90
Could not find nucleotides of chain M in annotation 4xco.json. We expect a problem with 4xco mmCIF download. Delete it and retry.
4xco_1_M_1-136
Could not find nucleotides of chain M in annotation 4xco.json. We expect a problem with 4xco mmCIF download. Delete it and retry.
4xco_1_E_46-90
Could not find nucleotides of chain E in annotation 4xco.json. We expect a problem with 4xco mmCIF download. Delete it and retry.
4xco_1_E_1-136
Could not find nucleotides of chain E in annotation 4xco.json. We expect a problem with 4xco mmCIF download. Delete it and retry.
1z43_1_A_50-94
Could not find nucleotides of chain A in annotation 1z43.json. We expect a problem with 1z43 mmCIF download. Delete it and retry.
1z43_1_A_1-136
Could not find nucleotides of chain A in annotation 1z43.json. We expect a problem with 1z43 mmCIF download. Delete it and retry.
2v3c_1_N_46-90
Could not find nucleotides of chain N in annotation 2v3c.json. We expect a problem with 2v3c mmCIF download. Delete it and retry.
2v3c_1_N_1-136
Could not find nucleotides of chain N in annotation 2v3c.json. We expect a problem with 2v3c mmCIF download. Delete it and retry.
2v3c_1_M_46-90
Could not find nucleotides of chain M in annotation 2v3c.json. We expect a problem with 2v3c mmCIF download. Delete it and retry.
2v3c_1_M_1-136
Could not find nucleotides of chain M in annotation 2v3c.json. We expect a problem with 2v3c mmCIF download. Delete it and retry.
1lng_1_B_48-92
Could not find nucleotides of chain B in annotation 1lng.json. We expect a problem with 1lng mmCIF download. Delete it and retry.
1lng_1_B_1-136
Could not find nucleotides of chain B in annotation 1lng.json. We expect a problem with 1lng mmCIF download. Delete it and retry.
3j5s_1_B_1-101
Could not find nucleotides of chain B in annotation 3j5s.json. We expect a problem with 3j5s mmCIF download. Delete it and retry.
3j5s_1_B_1-99
Could not find nucleotides of chain B in annotation 3j5s.json. We expect a problem with 3j5s mmCIF download. Delete it and retry.
3j5s_1_A_1-360
Could not find nucleotides of chain A in annotation 3j5s.json. We expect a problem with 3j5s mmCIF download. Delete it and retry.
3j45_1_5_1-108
Could not find nucleotides of chain 5 in annotation 3j45.json. We expect a problem with 3j45 mmCIF download. Delete it and retry.
3j46_1_4_2-109
Could not find nucleotides of chain 4 in annotation 3j46.json. We expect a problem with 3j46 mmCIF download. Delete it and retry.
3jcr_1_M_1-141
DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_M_1-141.
3jcr_1_M_1-107
DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_M_1-107.
3jcr_1_M_1-188
DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_M_1-188.
4v5z_1_B0_1-2902
DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2902.
4v5z_1_B0_1-2840
DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2840.
4v5z_1_B0_1-2899
DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2899.
3deg_1_G_1-70
Could not find nucleotides of chain G in annotation 3deg.json. We expect a problem with 3deg mmCIF download. Delete it and retry.
5d8h_1_A_1-74
Could not find nucleotides of chain A in annotation 5d8h.json. We expect a problem with 5d8h mmCIF download. Delete it and retry.
5g2x_1_A_595-692
Sequence is too short. (< 5 resolved nts)
5g2y_1_A_595-692
Could not find nucleotides of chain A in annotation 5g2y.json. We expect a problem with 5g2y mmCIF download. Delete it and retry.
3j0o_1_h_1-111
Could not find nucleotides of chain h in annotation 3j0o.json. We expect a problem with 3j0o mmCIF download. Delete it and retry.
3j0l_1_h_1-111
Could not find nucleotides of chain h in annotation 3j0l.json. We expect a problem with 3j0l mmCIF download. Delete it and retry.
3j0p_1_h_1-111
Could not find nucleotides of chain h in annotation 3j0p.json. We expect a problem with 3j0p mmCIF download. Delete it and retry.
3j0q_1_h_1-111
Could not find nucleotides of chain h in annotation 3j0q.json. We expect a problem with 3j0q mmCIF download. Delete it and retry.
3iy8_1_A_1-540
DSSR warning 3iy8.json: no nucleotides found. Ignoring 3iy8_1_A_1-540.
1j1u_1_B_1-74
Could not find nucleotides of chain B in annotation 1j1u.json. We expect a problem with 1j1u mmCIF download. Delete it and retry.
4v5z_1_BY_2-113
DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_BY_2-113.
4v5z_1_BZ_1-70
DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_BZ_1-70.
4cxg_1_1_1-135
Could not find nucleotides of chain 1 in annotation 4cxg.json. We expect a problem with 4cxg mmCIF download. Delete it and retry.
4cxh_1_1_1-135
Could not find nucleotides of chain 1 in annotation 4cxh.json. We expect a problem with 4cxh mmCIF download. Delete it and retry.
4cxg_1_2_1-50
Could not find nucleotides of chain 2 in annotation 4cxg.json. We expect a problem with 4cxg mmCIF download. Delete it and retry.
4cxh_1_2_1-50
Could not find nucleotides of chain 2 in annotation 4cxh.json. We expect a problem with 4cxh mmCIF download. Delete it and retry.
4v8y_1_CN_1-87
Could not find nucleotides of chain CN in annotation 4v8y.json. We expect a problem with 4v8y mmCIF download. Delete it and retry.
1c0a_1_B_1-74
Could not find nucleotides of chain B in annotation 1c0a.json. We expect a problem with 1c0a mmCIF download. Delete it and retry.
1j2b_1_C_1-74
Could not find nucleotides of chain C in annotation 1j2b.json. We expect a problem with 1j2b mmCIF download. Delete it and retry.
1j2b_1_D_1-74
Could not find nucleotides of chain D in annotation 1j2b.json. We expect a problem with 1j2b mmCIF download. Delete it and retry.
6d90_1_4_1-187
Could not find nucleotides of chain 4 in annotation 6d90.json. We expect a problem with 6d90 mmCIF download. Delete it and retry.
3j16_1_K_1-60
Could not find nucleotides of chain K in annotation 3j16.json. We expect a problem with 3j16 mmCIF download. Delete it and retry.
1mvr_1_B_1-96
DSSR warning 1mvr.json: no nucleotides found. Ignoring 1mvr_1_B_1-96.
4adx_1_0_132-2915
DSSR warning 4adx.json: no nucleotides found. Ignoring 4adx_1_0_132-2915.
4adx_1_0_1-2923
DSSR warning 4adx.json: no nucleotides found. Ignoring 4adx_1_0_1-2923.
4adx_1_9_1-121
DSSR warning 4adx.json: no nucleotides found. Ignoring 4adx_1_9_1-121.
2azx_1_D_1-72
Could not find nucleotides of chain D in annotation 2azx.json. We expect a problem with 2azx mmCIF download. Delete it and retry.
2azx_1_C_1-72
Could not find nucleotides of chain C in annotation 2azx.json. We expect a problem with 2azx mmCIF download. Delete it and retry.
3eq4_1_Y_1-69
DSSR warning 3eq4.json: no nucleotides found. Ignoring 3eq4_1_Y_1-69.
2il9_1_A_2-142
Could not find nucleotides of chain A in annotation 2il9.json. We expect a problem with 2il9 mmCIF download. Delete it and retry.
2il9_1_M_2-142
Could not find nucleotides of chain M in annotation 2il9.json. We expect a problem with 2il9 mmCIF download. Delete it and retry.
4v92_1_AZ_1-184
Could not find nucleotides of chain AZ in annotation 4v92.json. We expect a problem with 4v92 mmCIF download. Delete it and retry.
3v7e_1_D_1-125
Could not find nucleotides of chain D in annotation 3v7e.json. We expect a problem with 3v7e mmCIF download. Delete it and retry.
4v5z_1_AA_1-1563
DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_AA_1-1563.
4v5z_1_AA_1-1562
DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_AA_1-1562.
......