updated docker generator

 nohup.out
 log_of_the_run.sh
+latest_run.log
 results/
+archive/
 logs/
 data/
 esl*

@@ -23,3 +23,4 @@ rm x3dna-dssr
 # to run, use something like:
 # docker run -v /home/persalteas/Data/RNA/3D/:/3D -v /home/persalteas/Data/RNA/sequences/:/sequences -v /home/persalteas/labo/:/runDir persalteas/rnanet [ additional options here ]
 # Without additional options, this runs a standard pass with known issues support, log output, and no statistics. The default resolution threshold is 4.0 Angstroms.
+