Louis BECQUEY / RNANet

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Khodor HANNOUSH
4846d49a 1 parent e6dff723

Moved to version beta 1.4 by making sina as a command line and adding pydca for feature calculation

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Showing 2 changed files with 3 additions and 3 deletions
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......@@ -952,8 +952,8 @@ def par_distance_matrix(filelist, f, label, consider_all_atoms, s):
else:
d[i,j] = get_euclidian_distance(coordinates_with_gaps[i], coordinates_with_gaps[j])
if f not in LSU_set and f not in SSU_set:
np.savetxt(runDir + '/results/distance_matrices/' + f + '_'+ label + '/'+ s.id.strip("\'") + '.csv', d, delimiter=",", fmt="%.3f")
# if f not in LSU_set and f not in SSU_set:
np.savetxt(runDir + '/results/distance_matrices/' + f + '_'+ label + '/'+ s.id.strip("\'") + '.csv', d, delimiter=",", fmt="%.3f")
return 1-np.isnan(d).astype(int), np.nan_to_num(d), np.nan_to_num(d*d)
@trace_unhandled_exceptions
......@@ -1173,7 +1173,7 @@ if __name__ == "__main__":
sys.exit()
elif opt == '--version':
print("RNANet statistics 1.3 beta")
print("RNANet statistics 1.4 beta")
sys.exit()
elif opt == "-r" or opt == "--resolution":
assert float(arg) > 0.0 and float(arg) <= 20.0
......