Modified couple of GMM n modes

Louis BECQUEY
Commit 60f0af5acad06695acd782f9401f5e166852f45f 60f0af5a 1 parent 149243a0
Showing 3 changed files with 26 additions and 66 deletions
geometric_stats.py
known_issues.txt
known_issues_reasons.txt
--- a/geometric_stats.py
View file @60f0af5
+++ b/geometric_stats.py
View file @60f0af5
@@ -55,7 +55,7 @@ modes_data = {
     "P-O5'-C5'":2, "O5'-C5'-C4'":1, "C5'-C4'-P":2, "C5'-C4'-C1'":2, "C4'-P-O5'":2, "C4'-C1'-B1":2, "C1'-C4'-P":2, "C1'-B1-B2":2,
     # HiRE-RNA, torsions
-    "P-O5'-C5'-C4'":1, "O5'-C5'-C4'-P°":3, "O5'-C5'-C4'-C1'":3, "C5'-C4'-P°-O5'°":3, "C5'-C4'-C1'-B1":2, "C4'-P°-O5'°-C5'°":3, "C4'-C1'-B1-B2":3, "C1'-C4'-P°-O5'°":3,
+    "P-O5'-C5'-C4'":3, "O5'-C5'-C4'-P°":3, "O5'-C5'-C4'-C1'":3, "C5'-C4'-P°-O5'°":3, "C5'-C4'-C1'-B1":2, "C4'-P°-O5'°-C5'°":3, "C4'-C1'-B1-B2":3, "C1'-C4'-P°-O5'°":3,
     # HiRE-RNA, basepairs
     "cWW_AA_tips_distance":3, "cWW_AA_C1'-B1-B1pair":1, "cWW_AA_B1-B1pair-C1'pair":1, "cWW_AA_C4'-C1'-B1-B1pair":2, "cWW_AA_B1-B1pair-C1'pair-C4'pair":3, "cWW_AA_alpha_1":2, "cWW_AA_alpha_2":3, "cWW_AA_dB1":3, "cWW_AA_dB2":3, 
@@ -172,7 +172,7 @@ modes_data = {
     "tWH_CG_tips_distance":4, "tWH_CG_C1'-B1-B1pair":2, "tWH_CG_B1-B1pair-C1'pair":1, "tWH_CG_C4'-C1'-B1-B1pair":2, "tWH_CG_B1-B1pair-C1'pair-C4'pair":3, "tWH_CG_alpha_1":2, "tWH_CG_alpha_2":1, "tWH_CG_dB1":3, "tWH_CG_dB2":2, 
     "cHW_CG_tips_distance":3, "cHW_CG_C1'-B1-B1pair":2, "cHW_CG_B1-B1pair-C1'pair":2, "cHW_CG_C4'-C1'-B1-B1pair":1, "cHW_CG_B1-B1pair-C1'pair-C4'pair":2, "cHW_CG_alpha_1":1, "cHW_CG_alpha_2":2, "cHW_CG_dB1":2, "cHW_CG_dB2":2, 
     "tHW_CG_tips_distance":5, "tHW_CG_C1'-B1-B1pair":1, "tHW_CG_B1-B1pair-C1'pair":2, "tHW_CG_C4'-C1'-B1-B1pair":1, "tHW_CG_B1-B1pair-C1'pair-C4'pair":2, "tHW_CG_alpha_1":3, "tHW_CG_alpha_2":2, "tHW_CG_dB1":4, "tHW_CG_dB2":3, 
-    "cWS_CG_tips_distance":2, "cWS_CG_C1'-B1-B1pair":1, "cWS_CG_B1-B1pair-C1'pair":1, "cWS_CG_C4'-C1'-B1-B1pair":1, "cWS_CG_B1-B1pair-C1'pair-C4'pair":1, "cWS_CG_alpha_1":1, "cWS_CG_alpha_2":2, "cWS_CG_dB1":2, "cWS_CG_dB2":3, 
+    "cWS_CG_tips_distance":2, "cWS_CG_C1'-B1-B1pair":1, "cWS_CG_B1-B1pair-C1'pair":1, "cWS_CG_C4'-C1'-B1-B1pair":2, "cWS_CG_B1-B1pair-C1'pair-C4'pair":1, "cWS_CG_alpha_1":1, "cWS_CG_alpha_2":2, "cWS_CG_dB1":2, "cWS_CG_dB2":3, 
     "tWS_CG_tips_distance":2, "tWS_CG_C1'-B1-B1pair":3, "tWS_CG_B1-B1pair-C1'pair":1, "tWS_CG_C4'-C1'-B1-B1pair":2, "tWS_CG_B1-B1pair-C1'pair-C4'pair":1, "tWS_CG_alpha_1":2, "tWS_CG_alpha_2":1, "tWS_CG_dB1":2, "tWS_CG_dB2":4, 
     "cSW_CG_tips_distance":7, "cSW_CG_C1'-B1-B1pair":1, "cSW_CG_B1-B1pair-C1'pair":2, "cSW_CG_C4'-C1'-B1-B1pair":2, "cSW_CG_B1-B1pair-C1'pair-C4'pair":3, "cSW_CG_alpha_1":1, "cSW_CG_alpha_2":2, "cSW_CG_dB1":1, "cSW_CG_dB2":3, 
     "tSW_CG_tips_distance":4, "tSW_CG_C1'-B1-B1pair":1, "tSW_CG_B1-B1pair-C1'pair":2, "tSW_CG_C4'-C1'-B1-B1pair":3, "tSW_CG_B1-B1pair-C1'pair-C4'pair":2, "tSW_CG_alpha_1":1, "tSW_CG_alpha_2":2, "tSW_CG_dB1":7, "tSW_CG_dB2":2, 
@@ -190,7 +190,7 @@ modes_data = {
     "tWH_CU_tips_distance":1, "tWH_CU_C1'-B1-B1pair":2, "tWH_CU_B1-B1pair-C1'pair":2, "tWH_CU_C4'-C1'-B1-B1pair":3, "tWH_CU_B1-B1pair-C1'pair-C4'pair":2, "tWH_CU_alpha_1":3, "tWH_CU_alpha_2":3, "tWH_CU_dB1":5, "tWH_CU_dB2":2, 
     "cHW_CU_tips_distance":3, "cHW_CU_C1'-B1-B1pair":2, "cHW_CU_B1-B1pair-C1'pair":2, "cHW_CU_C4'-C1'-B1-B1pair":1, "cHW_CU_B1-B1pair-C1'pair-C4'pair":3, "cHW_CU_alpha_1":2, "cHW_CU_alpha_2":2, "cHW_CU_dB1":1, "cHW_CU_dB2":3, 
     "tHW_CU_tips_distance":8, "tHW_CU_C1'-B1-B1pair":1, "tHW_CU_B1-B1pair-C1'pair":1, "tHW_CU_C4'-C1'-B1-B1pair":3, "tHW_CU_B1-B1pair-C1'pair-C4'pair":2, "tHW_CU_alpha_1":1, "tHW_CU_alpha_2":2, "tHW_CU_dB1":3, "tHW_CU_dB2":3, 
-    "cWS_CU_tips_distance":4, "cWS_CU_C1'-B1-B1pair":1, "cWS_CU_B1-B1pair-C1'pair":2, "cWS_CU_C4'-C1'-B1-B1pair":2, "cWS_CU_B1-B1pair-C1'pair-C4'pair":2, "cWS_CU_alpha_1":3, "cWS_CU_alpha_2":2, "cWS_CU_dB1":4, "cWS_CU_dB2":2, 
+    "cWS_CU_tips_distance":4, "cWS_CU_C1'-B1-B1pair":1, "cWS_CU_B1-B1pair-C1'pair":2, "cWS_CU_C4'-C1'-B1-B1pair":3, "cWS_CU_B1-B1pair-C1'pair-C4'pair":2, "cWS_CU_alpha_1":3, "cWS_CU_alpha_2":2, "cWS_CU_dB1":4, "cWS_CU_dB2":2, 
     "tWS_CU_tips_distance":5, "tWS_CU_C1'-B1-B1pair":3, "tWS_CU_B1-B1pair-C1'pair":1, "tWS_CU_C4'-C1'-B1-B1pair":2, "tWS_CU_B1-B1pair-C1'pair-C4'pair":2, "tWS_CU_alpha_1":2, "tWS_CU_alpha_2":1, "tWS_CU_dB1":3, "tWS_CU_dB2":5, 
     "cSW_CU_tips_distance":3, "cSW_CU_C1'-B1-B1pair":2, "cSW_CU_B1-B1pair-C1'pair":2, "cSW_CU_C4'-C1'-B1-B1pair":2, "cSW_CU_B1-B1pair-C1'pair-C4'pair":3, "cSW_CU_alpha_1":3, "cSW_CU_alpha_2":3, "cSW_CU_dB1":2, "cSW_CU_dB2":4, 
     "tSW_CU_tips_distance":7, "tSW_CU_C1'-B1-B1pair":2, "tSW_CU_B1-B1pair-C1'pair":2, "tSW_CU_C4'-C1'-B1-B1pair":2, "tSW_CU_B1-B1pair-C1'pair-C4'pair":2, "tSW_CU_alpha_1":2, "tSW_CU_alpha_2":2, "tSW_CU_dB1":2, "tSW_CU_dB2":2, 
@@ -203,7 +203,7 @@ modes_data = {
     "cSS_CU_tips_distance":5, "cSS_CU_C1'-B1-B1pair":2, "cSS_CU_B1-B1pair-C1'pair":2, "cSS_CU_C4'-C1'-B1-B1pair":1, "cSS_CU_B1-B1pair-C1'pair-C4'pair":1, "cSS_CU_alpha_1":2, "cSS_CU_alpha_2":3, "cSS_CU_dB1":6, "cSS_CU_dB2":1, 
     "tSS_CU_tips_distance":5, "tSS_CU_C1'-B1-B1pair":2, "tSS_CU_B1-B1pair-C1'pair":3, "tSS_CU_C4'-C1'-B1-B1pair":2, "tSS_CU_B1-B1pair-C1'pair-C4'pair":2, "tSS_CU_alpha_1":3, "tSS_CU_alpha_2":3, "tSS_CU_dB1":7, "tSS_CU_dB2":2, 
     "cWW_GA_tips_distance":5, "cWW_GA_C1'-B1-B1pair":1, "cWW_GA_B1-B1pair-C1'pair":1, "cWW_GA_C4'-C1'-B1-B1pair":2, "cWW_GA_B1-B1pair-C1'pair-C4'pair":2, "cWW_GA_alpha_1":1, "cWW_GA_alpha_2":1, "cWW_GA_dB1":2, "cWW_GA_dB2":1, 
-    "tWW_GA_tips_distance":6, "tWW_GA_C1'-B1-B1pair":1, "tWW_GA_B1-B1pair-C1'pair":1, "tWW_GA_C4'-C1'-B1-B1pair":1, "tWW_GA_B1-B1pair-C1'pair-C4'pair":2, "tWW_GA_alpha_1":1, "tWW_GA_alpha_2":2, "tWW_GA_dB1":1, "tWW_GA_dB2":2, 
+    "tWW_GA_tips_distance":6, "tWW_GA_C1'-B1-B1pair":1, "tWW_GA_B1-B1pair-C1'pair":1, "tWW_GA_C4'-C1'-B1-B1pair":1, "tWW_GA_B1-B1pair-C1'pair-C4'pair":2, "tWW_GA_alpha_1":2, "tWW_GA_alpha_2":2, "tWW_GA_dB1":1, "tWW_GA_dB2":2, 
     "cWH_GA_tips_distance":2, "cWH_GA_C1'-B1-B1pair":1, "cWH_GA_B1-B1pair-C1'pair":1, "cWH_GA_C4'-C1'-B1-B1pair":3, "cWH_GA_B1-B1pair-C1'pair-C4'pair":2, "cWH_GA_alpha_1":2, "cWH_GA_alpha_2":1, "cWH_GA_dB1":2, "cWH_GA_dB2":2, 
     "tWH_GA_tips_distance":7, "tWH_GA_C1'-B1-B1pair":1, "tWH_GA_B1-B1pair-C1'pair":2, "tWH_GA_C4'-C1'-B1-B1pair":1, "tWH_GA_B1-B1pair-C1'pair-C4'pair":2, "tWH_GA_alpha_1":2, "tWH_GA_alpha_2":2, "tWH_GA_dB1":1, "tWH_GA_dB2":6, 
     "cHW_GA_tips_distance":4, "cHW_GA_C1'-B1-B1pair":2, "cHW_GA_B1-B1pair-C1'pair":2, "cHW_GA_C4'-C1'-B1-B1pair":2, "cHW_GA_B1-B1pair-C1'pair-C4'pair":3, "cHW_GA_alpha_1":1, "cHW_GA_alpha_2":2, "cHW_GA_dB1":1, "cHW_GA_dB2":4, 
@@ -227,7 +227,7 @@ modes_data = {
     "cHW_GC_tips_distance":4, "cHW_GC_C1'-B1-B1pair":1, "cHW_GC_B1-B1pair-C1'pair":1, "cHW_GC_C4'-C1'-B1-B1pair":2, "cHW_GC_B1-B1pair-C1'pair-C4'pair":2, "cHW_GC_alpha_1":1, "cHW_GC_alpha_2":1, "cHW_GC_dB1":3, "cHW_GC_dB2":4, 
     "tHW_GC_tips_distance":5, "tHW_GC_C1'-B1-B1pair":2, "tHW_GC_B1-B1pair-C1'pair":2, "tHW_GC_C4'-C1'-B1-B1pair":2, "tHW_GC_B1-B1pair-C1'pair-C4'pair":2, "tHW_GC_alpha_1":2, "tHW_GC_alpha_2":2, "tHW_GC_dB1":2, "tHW_GC_dB2":4, 
     "cWS_GC_tips_distance":8, "cWS_GC_C1'-B1-B1pair":1, "cWS_GC_B1-B1pair-C1'pair":1, "cWS_GC_C4'-C1'-B1-B1pair":2, "cWS_GC_B1-B1pair-C1'pair-C4'pair":2, "cWS_GC_alpha_1":2, "cWS_GC_alpha_2":1, "cWS_GC_dB1":2, "cWS_GC_dB2":1, 
-    "tWS_GC_tips_distance":2, "tWS_GC_C1'-B1-B1pair":1, "tWS_GC_B1-B1pair-C1'pair":1, "tWS_GC_C4'-C1'-B1-B1pair":3, "tWS_GC_B1-B1pair-C1'pair-C4'pair":2, "tWS_GC_alpha_1":1, "tWS_GC_alpha_2":1, "tWS_GC_dB1":4, "tWS_GC_dB2":5, 
+    "tWS_GC_tips_distance":2, "tWS_GC_C1'-B1-B1pair":1, "tWS_GC_B1-B1pair-C1'pair":1, "tWS_GC_C4'-C1'-B1-B1pair":3, "tWS_GC_B1-B1pair-C1'pair-C4'pair":2, "tWS_GC_alpha_1":2, "tWS_GC_alpha_2":1, "tWS_GC_dB1":4, "tWS_GC_dB2":5, 
     "cSW_GC_tips_distance":4, "cSW_GC_C1'-B1-B1pair":2, "cSW_GC_B1-B1pair-C1'pair":3, "cSW_GC_C4'-C1'-B1-B1pair":1, "cSW_GC_B1-B1pair-C1'pair-C4'pair":2, "cSW_GC_alpha_1":3, "cSW_GC_alpha_2":2, "cSW_GC_dB1":3, "cSW_GC_dB2":2, 
     "tSW_GC_tips_distance":2, "tSW_GC_C1'-B1-B1pair":1, "tSW_GC_B1-B1pair-C1'pair":3, "tSW_GC_C4'-C1'-B1-B1pair":1, "tSW_GC_B1-B1pair-C1'pair-C4'pair":2, "tSW_GC_alpha_1":2, "tSW_GC_alpha_2":2, "tSW_GC_dB1":4, "tSW_GC_dB2":2, 
     "cHH_GC_tips_distance":1, "cHH_GC_C1'-B1-B1pair":3, "cHH_GC_B1-B1pair-C1'pair":1, "cHH_GC_C4'-C1'-B1-B1pair":2, "cHH_GC_B1-B1pair-C1'pair-C4'pair":1, "cHH_GC_alpha_1":2, "cHH_GC_alpha_2":2, "cHH_GC_dB1":3, "cHH_GC_dB2":3, 
@@ -1884,7 +1884,7 @@ def concat_jsons(flist, outfilename):
     result = []
     for f in flist:
         if not os.path.isfile(f):
-            warn("Unable to find "+f)
+            warn("Unable to find "+f.split('/')[-1])
             continue
         with open(f, "rb") as infile:
             result.append(json.load(infile))
--- a/known_issues.txt
View file @60f0af5
+++ b/known_issues.txt
View file @60f0af5
@@ -723,7 +723,6 @@
 6r7b_1_E
 6o7i_1_I
 6o7h_1_K
-7a5g_1_A3
 7l6t_1_C
 7jyy_1_F
 7jyy_1_E
@@ -816,7 +815,6 @@
 6ppn_1_A
 6ppn_1_I
 5flx_1_Z
-7a5g_1_B3
 6eri_1_AX
 7k5l_1_R
 7d80_1_Y
@@ -853,7 +851,6 @@
 4x9e_1_H
 6z1p_1_BB
 6z1p_1_BA
-7a5g_1_A6
 2uxd_1_X
 6ywe_1_BB
 3ol9_1_D
@@ -1053,8 +1050,6 @@
 6l74_1_I
 5uh9_1_I
 7a5j_1_X
-7a5g_1_24
-7a5g_1_C
 6sag_1_R
 4udv_1_R
 5zsc_1_D
@@ -1518,25 +1513,20 @@
 7d0g_1_A_805-913
 7d0f_1_A_817-913
 7o7z_1_AH_144-220
-7a5g_1_A3_1-1454
-7a5g_1_A6_4-949
 4c9d_1_D_29-1
 4c9d_1_C_29-1
-7a5g_1_24_1-70
-7a5g_1_C_1-70
-7a5g_1_j_1-73
-7aih_1_1_2984-3610
 7aih_1_1_2400-2963
-7ane_1_2_2489-3115
+7aih_1_1_2984-3610
 7ane_1_2_1904-2468
+7ane_1_2_2489-3115
 5g2x_1_A_595-692
-7aor_1_2_2589-3210
 7aor_1_2_2020-2579
+7aor_1_2_2589-3210
 7a5p_1_2_259-449
-7aor_1_A_2589-3210
 7aor_1_A_2020-2579
-7am2_1_1_2491-3117
+7aor_1_A_2589-3210
 7am2_1_1_1904-2470
-7ane_1_1_2489-3115
+7am2_1_1_2491-3117
 7ane_1_1_1904-2468
+7ane_1_1_2489-3115
 6uz7_1_8_2140-2825
--- a/known_issues_reasons.txt
View file @60f0af5
+++ b/known_issues_reasons.txt
View file @60f0af5
@@ -1145,7 +1145,7 @@ Could not find nucleotides of chain U3 in annotation 7a5k.json. Either there is 
 Could not find nucleotides of chain U in annotation 6nu2.json. Either there is a problem with 6nu2 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
 7a5g_1_U3
-Could not download and/or find annotations for 7a5g_1_U3.
+Could not find nucleotides of chain U3 in annotation 7a5g.json. Either there is a problem with 7a5g mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
 6nu3_1_U
 Could not find nucleotides of chain U in annotation 6nu3.json. Either there is a problem with 6nu3 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
@@ -2173,9 +2173,6 @@ Sequence is too short. (< 5 resolved nts)
 6o7h_1_K
 Sequence is too short. (< 5 resolved nts)
-7a5g_1_A3
-Could not download and/or find annotations for 7a5g_1_A3.
-
 7l6t_1_C
 Sequence is too short. (< 5 resolved nts)
@@ -2452,9 +2449,6 @@ Sequence is too short. (< 5 resolved nts)
 5flx_1_Z
 Could not find nucleotides of chain Z in annotation 5flx.json. Either there is a problem with 5flx mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
-7a5g_1_B3
-Could not download and/or find annotations for 7a5g_1_B3.
-
 6eri_1_AX
 Could not find nucleotides of chain AX in annotation 6eri.json. Either there is a problem with 6eri mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
@@ -2563,9 +2557,6 @@ Could not find nucleotides of chain BB in annotation 6z1p.json. Either there is 
 6z1p_1_BA
 Could not find nucleotides of chain BA in annotation 6z1p.json. Either there is a problem with 6z1p mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
-7a5g_1_A6
-Could not download and/or find annotations for 7a5g_1_A6.
-
 2uxd_1_X
 Sequence is too short. (< 5 resolved nts)
@@ -3163,12 +3154,6 @@ Sequence is too short. (< 5 resolved nts)
 7a5j_1_X
 Could not find nucleotides of chain X in annotation 7a5j.json. Either there is a problem with 7a5j mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
-7a5g_1_24
-Could not download and/or find annotations for 7a5g_1_24.
-
-7a5g_1_C
-Could not download and/or find annotations for 7a5g_1_C.
-
 6sag_1_R
 Sequence is too short. (< 5 resolved nts)
@@ -3365,7 +3350,7 @@ Sequence is too short. (< 5 resolved nts)
 Sequence is too short. (< 5 resolved nts)
 7a5g_1_J
-Could not download and/or find annotations for 7a5g_1_J.
+Could not find nucleotides of chain J in annotation 7a5g.json. Either there is a problem with 7a5g mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
 6gx6_1_B
 Sequence is too short. (< 5 resolved nts)
@@ -4558,67 +4543,52 @@ Could not find nucleotides of chain A in annotation 7d0f.json. Either there is a
 7o7z_1_AH_144-220
 Could not find nucleotides of chain AH in annotation 7o7z.json. Either there is a problem with 7o7z mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
-7a5g_1_A3_1-1454
-Could not download and/or find annotations for 7a5g_1_A3_1-1454.
-
-7a5g_1_A6_4-949
-Could not download and/or find annotations for 7a5g_1_A6_4-949.
-
 4c9d_1_D_29-1
 Mapping is reversed, this case is not supported (yet).
 4c9d_1_C_29-1
 Mapping is reversed, this case is not supported (yet).
-7a5g_1_24_1-70
+7aih_1_1_2400-2963
-Could not download and/or find annotations for 7a5g_1_24_1-70.
-
-7a5g_1_C_1-70
-Could not download and/or find annotations for 7a5g_1_C_1-70.
-
-7a5g_1_j_1-73
-Could not download and/or find annotations for 7a5g_1_j_1-73.
-
-7aih_1_1_2984-3610
 Could not find nucleotides of chain 1 in annotation 7aih.json. Either there is a problem with 7aih mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
-7aih_1_1_2400-2963
+7aih_1_1_2984-3610
 Could not find nucleotides of chain 1 in annotation 7aih.json. Either there is a problem with 7aih mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
-7ane_1_2_2489-3115
+7ane_1_2_1904-2468
 Could not find nucleotides of chain 2 in annotation 7ane.json. Either there is a problem with 7ane mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
-7ane_1_2_1904-2468
+7ane_1_2_2489-3115
 Could not find nucleotides of chain 2 in annotation 7ane.json. Either there is a problem with 7ane mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
 5g2x_1_A_595-692
 Sequence is too short. (< 5 resolved nts)
-7aor_1_2_2589-3210
+7aor_1_2_2020-2579
 Could not find nucleotides of chain 2 in annotation 7aor.json. Either there is a problem with 7aor mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
-7aor_1_2_2020-2579
+7aor_1_2_2589-3210
 Could not find nucleotides of chain 2 in annotation 7aor.json. Either there is a problem with 7aor mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
 7a5p_1_2_259-449
 Could not find nucleotides of chain 2 in annotation 7a5p.json. Either there is a problem with 7a5p mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
-7aor_1_A_2589-3210
+7aor_1_A_2020-2579
 Could not find nucleotides of chain A in annotation 7aor.json. Either there is a problem with 7aor mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
-7aor_1_A_2020-2579
+7aor_1_A_2589-3210
 Could not find nucleotides of chain A in annotation 7aor.json. Either there is a problem with 7aor mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
-7am2_1_1_2491-3117
+7am2_1_1_1904-2470
 Could not find nucleotides of chain 1 in annotation 7am2.json. Either there is a problem with 7am2 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
-7am2_1_1_1904-2470
+7am2_1_1_2491-3117
 Could not find nucleotides of chain 1 in annotation 7am2.json. Either there is a problem with 7am2 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
-7ane_1_1_2489-3115
+7ane_1_1_1904-2468
 Could not find nucleotides of chain 1 in annotation 7ane.json. Either there is a problem with 7ane mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
-7ane_1_1_1904-2468
+7ane_1_1_2489-3115
 Could not find nucleotides of chain 1 in annotation 7ane.json. Either there is a problem with 7ane mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
 6uz7_1_8_2140-2825