Louis BECQUEY

typo in statistics.py + recomputation

1 1ml5_1_a_1-2914 1 1ml5_1_a_1-2914
2 1ml5_1_a_151-2903 2 1ml5_1_a_151-2903
3 -1ml5_1_A_7-1518
4 1ml5_1_A_7-1515 3 1ml5_1_A_7-1515
5 1ml5_1_A_2-1520 4 1ml5_1_A_2-1520
5 +1ml5_1_A_7-1518
6 1ml5_1_b_5-121 6 1ml5_1_b_5-121
7 2rdo_1_A_3-118 7 2rdo_1_A_3-118
8 4v48_1_A9_3-118 8 4v48_1_A9_3-118
9 4v47_1_A9_3-118 9 4v47_1_A9_3-118
10 -1vy7_1_AY_1-73
11 -1vy7_1_CY_1-73
12 -4w2h_1_CY_1-73
13 6zmi_1_L8_1267-4755 10 6zmi_1_L8_1267-4755
14 6zm7_1_L8_1267-4755 11 6zm7_1_L8_1267-4755
15 6y6x_1_L8_1267-4755 12 6y6x_1_L8_1267-4755
...@@ -23,7 +20,11 @@ ...@@ -23,7 +20,11 @@
23 6ole_1_D_1267-4755 20 6ole_1_D_1267-4755
24 6om0_1_D_1267-4755 21 6om0_1_D_1267-4755
25 6y2l_1_L8_1267-4755 22 6y2l_1_L8_1267-4755
23 +6lqm_1_8_1267-4755
26 6y0g_1_L8_1267-4755 24 6y0g_1_L8_1267-4755
25 +6lu8_1_8_1267-4755
26 +6lsr_1_8_1267-4755
27 +6lss_1_8_1267-4755
27 6oli_1_D_1267-4755 28 6oli_1_D_1267-4755
28 6olg_1_A3_1267-4755 29 6olg_1_A3_1267-4755
29 6y57_1_L8_1267-4755 30 6y57_1_L8_1267-4755
...@@ -38,97 +39,100 @@ ...@@ -38,97 +39,100 @@
38 5lks_1_L8_1267-4755 39 5lks_1_L8_1267-4755
39 6ip6_1_1C_1267-4755 40 6ip6_1_1C_1267-4755
40 4v6x_1_A8_1267-4755 41 4v6x_1_A8_1267-4755
42 +1vy7_1_AY_1-73
43 +1vy7_1_CY_1-73
44 +4w2h_1_CY_1-73
41 2z9q_1_A_1-72 45 2z9q_1_A_1-72
46 +4v42_1_BB_5-121
42 1ls2_1_B_1-73 47 1ls2_1_B_1-73
43 3ep2_1_Y_1-72 48 3ep2_1_Y_1-72
44 3eq3_1_Y_1-72 49 3eq3_1_Y_1-72
45 4v48_1_A6_1-73 50 4v48_1_A6_1-73
51 +1eg0_1_O_1-73
46 1gsg_1_T_1-72 52 1gsg_1_T_1-72
47 3jcr_1_H_1-115 53 3jcr_1_H_1-115
48 -1eg0_1_O_1-73
49 -4v42_1_BB_5-121
50 4v42_1_BA_1-2914 54 4v42_1_BA_1-2914
51 4v42_1_BA_151-2903 55 4v42_1_BA_151-2903
56 +4v48_1_BA_1-91
57 +4v48_1_BA_6-1541
58 +4v48_1_BA_1-1543
59 +4v48_1_BA_6-1538
60 +4v47_1_BA_1-91
61 +4v47_1_BA_6-1540
62 +4v47_1_BA_1-1542
63 +4v47_1_BA_6-1537
64 +2rdo_1_B_1-2903
65 +2rdo_1_B_6-1460
66 +2rdo_1_B_1-1528
67 +2rdo_1_B_6-1457
68 +2rdo_1_B_160-2893
69 +2rdo_1_B_1-2904
70 +2rdo_1_B_6-1522
71 +4v48_1_A0_1-2903
72 +4v48_1_A0_6-1460
73 +4v48_1_A0_1-1528
74 +4v48_1_A0_6-1457
75 +4v48_1_A0_160-2893
76 +4v48_1_A0_1-2904
77 +4v48_1_A0_6-1522
78 +4v47_1_A0_1-2903
79 +4v47_1_A0_6-1460
80 +4v47_1_A0_1-1528
81 +4v47_1_A0_6-1457
82 +4v47_1_A0_160-2893
83 +4v47_1_A0_1-2904
84 +4v47_1_A0_6-1522
52 2ob7_1_A_10-319 85 2ob7_1_A_10-319
53 1x1l_1_A_1-130 86 1x1l_1_A_1-130
54 1zc8_1_Z_1-130 87 1zc8_1_Z_1-130
55 1zc8_1_Z_1-91 88 1zc8_1_Z_1-91
56 2ob7_1_D_1-130 89 2ob7_1_D_1-130
57 -1r2x_1_C_1-58
58 -1r2w_1_C_1-58
59 -1eg0_1_L_1-56
60 -1eg0_1_L_1-57
61 6rxu_1_C2_588-2386 90 6rxu_1_C2_588-2386
62 -6rxu_1_C2_588-2383
63 6rxu_1_C2_583-2388 91 6rxu_1_C2_583-2388
92 +6rxu_1_C2_588-2383
64 5oql_1_2_588-2386 93 5oql_1_2_588-2386
65 -5oql_1_2_588-2383
66 5oql_1_2_583-2388 94 5oql_1_2_583-2388
95 +5oql_1_2_588-2383
67 6rxv_1_C2_588-2386 96 6rxv_1_C2_588-2386
68 -6rxv_1_C2_588-2383
69 6rxv_1_C2_583-2388 97 6rxv_1_C2_583-2388
98 +6rxv_1_C2_588-2383
70 6rxz_1_C2_588-2386 99 6rxz_1_C2_588-2386
71 -6rxz_1_C2_588-2383
72 6rxz_1_C2_583-2388 100 6rxz_1_C2_583-2388
101 +6rxz_1_C2_588-2383
73 6rxy_1_C2_588-2386 102 6rxy_1_C2_588-2386
74 -6rxy_1_C2_588-2383
75 6rxy_1_C2_583-2388 103 6rxy_1_C2_583-2388
104 +6rxy_1_C2_588-2383
76 6rxt_1_C2_588-2386 105 6rxt_1_C2_588-2386
77 -6rxt_1_C2_588-2383
78 6rxt_1_C2_583-2388 106 6rxt_1_C2_583-2388
79 -4v48_1_BA_1-91 107 +6rxt_1_C2_588-2383
80 -4v48_1_BA_6-1541 108 +1r2x_1_C_1-58
81 -4v48_1_BA_6-1538 109 +1r2w_1_C_1-58
82 -4v48_1_BA_1-1543 110 +1eg0_1_L_1-57
83 -4v47_1_BA_1-91 111 +1eg0_1_L_1-56
84 -4v47_1_BA_6-1540
85 -4v47_1_BA_6-1537
86 -4v47_1_BA_1-1542
87 -2rdo_1_B_6-1460
88 -2rdo_1_B_6-1522
89 -2rdo_1_B_1-2903
90 -2rdo_1_B_6-1457
91 -2rdo_1_B_1-2904
92 -2rdo_1_B_1-1528
93 -2rdo_1_B_160-2893
94 -4v48_1_A0_6-1460
95 -4v48_1_A0_6-1522
96 -4v48_1_A0_1-2903
97 -4v48_1_A0_6-1457
98 -4v48_1_A0_1-2904
99 -4v48_1_A0_1-1528
100 -4v48_1_A0_160-2893
101 -4v47_1_A0_6-1460
102 -4v47_1_A0_6-1522
103 -4v47_1_A0_1-2903
104 -4v47_1_A0_6-1457
105 -4v47_1_A0_1-2904
106 -4v47_1_A0_1-1528
107 -4v47_1_A0_160-2893
108 -1zc8_1_A_1-59
109 -1mvr_1_D_1-59
110 -4c9d_1_D_29-1
111 -4c9d_1_C_29-1
112 -4adx_1_9_1-121
113 -1zn1_1_B_1-59
114 -1emi_1_B_1-108
115 -3iy9_1_A_498-1027
116 -1jgq_1_A_20-55
117 1jgq_1_A_7-1518 112 1jgq_1_A_7-1518
118 -1jgq_1_A_7-1515 113 +1jgq_1_A_20-55
119 1jgq_1_A_2-1520 114 1jgq_1_A_2-1520
120 -4v42_1_AA_20-55 115 +1jgq_1_A_7-1515
121 4v42_1_AA_7-1518 116 4v42_1_AA_7-1518
122 -4v42_1_AA_7-1515 117 +4v42_1_AA_20-55
123 4v42_1_AA_2-1520 118 4v42_1_AA_2-1520
124 -1jgo_1_A_20-55 119 +4v42_1_AA_7-1515
125 1jgo_1_A_7-1518 120 1jgo_1_A_7-1518
126 -1jgo_1_A_7-1515 121 +1jgo_1_A_20-55
127 1jgo_1_A_2-1520 122 1jgo_1_A_2-1520
128 -1jgp_1_A_20-55 123 +1jgo_1_A_7-1515
129 1jgp_1_A_7-1518 124 1jgp_1_A_7-1518
130 -1jgp_1_A_7-1515 125 +1jgp_1_A_20-55
131 1jgp_1_A_2-1520 126 1jgp_1_A_2-1520
127 +1jgp_1_A_7-1515
128 +1zc8_1_A_1-59
129 +1mvr_1_D_1-59
130 +4c9d_1_D_29-1
131 +4c9d_1_C_29-1
132 +4adx_1_9_1-121
133 +1zn1_1_B_1-59
134 +1emi_1_B_1-108
135 +3iy9_1_A_498-1027
132 3ep2_1_B_1-50 136 3ep2_1_B_1-50
133 3eq3_1_B_1-50 137 3eq3_1_B_1-50
134 3eq4_1_B_1-50 138 3eq4_1_B_1-50
...@@ -139,18 +143,18 @@ ...@@ -139,18 +143,18 @@
139 3cw1_1_V_1-138 143 3cw1_1_V_1-138
140 3cw1_1_v_1-138 144 3cw1_1_v_1-138
141 2iy3_1_B_9-105 145 2iy3_1_B_9-105
142 -3jcr_1_N_1-106
143 3jcr_1_N_1-188 146 3jcr_1_N_1-188
147 +3jcr_1_N_1-106
144 2vaz_1_A_64-177 148 2vaz_1_A_64-177
145 -2ftc_1_R_81-1466
146 2ftc_1_R_1-1568 149 2ftc_1_R_1-1568
147 2ftc_1_R_792-1568 150 2ftc_1_R_792-1568
151 +2ftc_1_R_81-1466
148 3jcr_1_M_1-141 152 3jcr_1_M_1-141
149 -3jcr_1_M_1-107
150 3jcr_1_M_1-188 153 3jcr_1_M_1-188
151 -4v5z_1_B0_1-2840 154 +3jcr_1_M_1-107
152 4v5z_1_B0_1-2899 155 4v5z_1_B0_1-2899
153 4v5z_1_B0_1-2902 156 4v5z_1_B0_1-2902
157 +4v5z_1_B0_1-2840
154 5g2x_1_A_595-692 158 5g2x_1_A_595-692
155 3iy8_1_A_1-540 159 3iy8_1_A_1-540
156 4v5z_1_BY_2-113 160 4v5z_1_BY_2-113
...@@ -159,9 +163,5 @@ ...@@ -159,9 +163,5 @@
159 4adx_1_0_1-2923 163 4adx_1_0_1-2923
160 4adx_1_0_132-2915 164 4adx_1_0_132-2915
161 3eq4_1_Y_1-69 165 3eq4_1_Y_1-69
162 -4v5z_1_AA_1-1562
163 4v5z_1_AA_1-1563 166 4v5z_1_AA_1-1563
164 -6lqm_1_8_1267-4755 167 +4v5z_1_AA_1-1562
165 -6lu8_1_8_1267-4755
166 -6lsr_1_8_1267-4755
167 -6lss_1_8_1267-4755
......
...@@ -4,15 +4,15 @@ Could not find nucleotides of chain a in annotation 1ml5.json. Either there is a ...@@ -4,15 +4,15 @@ Could not find nucleotides of chain a in annotation 1ml5.json. Either there is a
4 1ml5_1_a_151-2903 4 1ml5_1_a_151-2903
5 Could not find nucleotides of chain a in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 5 Could not find nucleotides of chain a in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6 6
7 -1ml5_1_A_7-1518
8 -Could not find nucleotides of chain A in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
9 -
10 1ml5_1_A_7-1515 7 1ml5_1_A_7-1515
11 Could not find nucleotides of chain A in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 8 Could not find nucleotides of chain A in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
12 9
13 1ml5_1_A_2-1520 10 1ml5_1_A_2-1520
14 Could not find nucleotides of chain A in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 11 Could not find nucleotides of chain A in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
15 12
13 +1ml5_1_A_7-1518
14 +Could not find nucleotides of chain A in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
15 +
16 1ml5_1_b_5-121 16 1ml5_1_b_5-121
17 Could not find nucleotides of chain b in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 17 Could not find nucleotides of chain b in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
18 18
...@@ -25,15 +25,6 @@ DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A9_3-118. ...@@ -25,15 +25,6 @@ DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A9_3-118.
25 4v47_1_A9_3-118 25 4v47_1_A9_3-118
26 DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A9_3-118. 26 DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A9_3-118.
27 27
28 -1vy7_1_AY_1-73
29 -Sequence is too short. (< 5 resolved nts)
30 -
31 -1vy7_1_CY_1-73
32 -Sequence is too short. (< 5 resolved nts)
33 -
34 -4w2h_1_CY_1-73
35 -Sequence is too short. (< 5 resolved nts)
36 -
37 6zmi_1_L8_1267-4755 28 6zmi_1_L8_1267-4755
38 Could not find nucleotides of chain L8 in annotation 6zmi.json. Either there is a problem with 6zmi mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 29 Could not find nucleotides of chain L8 in annotation 6zmi.json. Either there is a problem with 6zmi mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
39 30
...@@ -73,9 +64,21 @@ Could not find nucleotides of chain D in annotation 6om0.json. Either there is a ...@@ -73,9 +64,21 @@ Could not find nucleotides of chain D in annotation 6om0.json. Either there is a
73 6y2l_1_L8_1267-4755 64 6y2l_1_L8_1267-4755
74 Could not find nucleotides of chain L8 in annotation 6y2l.json. Either there is a problem with 6y2l mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 65 Could not find nucleotides of chain L8 in annotation 6y2l.json. Either there is a problem with 6y2l mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
75 66
67 +6lqm_1_8_1267-4755
68 +Could not find nucleotides of chain 8 in annotation 6lqm.json. Either there is a problem with 6lqm mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
69 +
76 6y0g_1_L8_1267-4755 70 6y0g_1_L8_1267-4755
77 Could not find nucleotides of chain L8 in annotation 6y0g.json. Either there is a problem with 6y0g mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 71 Could not find nucleotides of chain L8 in annotation 6y0g.json. Either there is a problem with 6y0g mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
78 72
73 +6lu8_1_8_1267-4755
74 +Could not find nucleotides of chain 8 in annotation 6lu8.json. Either there is a problem with 6lu8 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
75 +
76 +6lsr_1_8_1267-4755
77 +Could not find nucleotides of chain 8 in annotation 6lsr.json. Either there is a problem with 6lsr mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
78 +
79 +6lss_1_8_1267-4755
80 +Could not find nucleotides of chain 8 in annotation 6lss.json. Either there is a problem with 6lss mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
81 +
79 6oli_1_D_1267-4755 82 6oli_1_D_1267-4755
80 Could not find nucleotides of chain D in annotation 6oli.json. Either there is a problem with 6oli mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 83 Could not find nucleotides of chain D in annotation 6oli.json. Either there is a problem with 6oli mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
81 84
...@@ -118,9 +121,21 @@ Could not find nucleotides of chain 1C in annotation 6ip6.json. Either there is ...@@ -118,9 +121,21 @@ Could not find nucleotides of chain 1C in annotation 6ip6.json. Either there is
118 4v6x_1_A8_1267-4755 121 4v6x_1_A8_1267-4755
119 Could not find nucleotides of chain A8 in annotation 4v6x.json. Either there is a problem with 4v6x mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 122 Could not find nucleotides of chain A8 in annotation 4v6x.json. Either there is a problem with 4v6x mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
120 123
124 +1vy7_1_AY_1-73
125 +Sequence is too short. (< 5 resolved nts)
126 +
127 +1vy7_1_CY_1-73
128 +Sequence is too short. (< 5 resolved nts)
129 +
130 +4w2h_1_CY_1-73
131 +Sequence is too short. (< 5 resolved nts)
132 +
121 2z9q_1_A_1-72 133 2z9q_1_A_1-72
122 DSSR warning 2z9q.json: no nucleotides found. Ignoring 2z9q_1_A_1-72. 134 DSSR warning 2z9q.json: no nucleotides found. Ignoring 2z9q_1_A_1-72.
123 135
136 +4v42_1_BB_5-121
137 +Could not find nucleotides of chain BB in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
138 +
124 1ls2_1_B_1-73 139 1ls2_1_B_1-73
125 DSSR warning 1ls2.json: no nucleotides found. Ignoring 1ls2_1_B_1-73. 140 DSSR warning 1ls2.json: no nucleotides found. Ignoring 1ls2_1_B_1-73.
126 141
...@@ -133,24 +148,108 @@ DSSR warning 3eq3.json: no nucleotides found. Ignoring 3eq3_1_Y_1-72. ...@@ -133,24 +148,108 @@ DSSR warning 3eq3.json: no nucleotides found. Ignoring 3eq3_1_Y_1-72.
133 4v48_1_A6_1-73 148 4v48_1_A6_1-73
134 DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A6_1-73. 149 DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A6_1-73.
135 150
151 +1eg0_1_O_1-73
152 +DSSR warning 1eg0.json: no nucleotides found. Ignoring 1eg0_1_O_1-73.
153 +
136 1gsg_1_T_1-72 154 1gsg_1_T_1-72
137 DSSR warning 1gsg.json: no nucleotides found. Ignoring 1gsg_1_T_1-72. 155 DSSR warning 1gsg.json: no nucleotides found. Ignoring 1gsg_1_T_1-72.
138 156
139 3jcr_1_H_1-115 157 3jcr_1_H_1-115
140 DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_H_1-115. 158 DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_H_1-115.
141 159
142 -1eg0_1_O_1-73
143 -DSSR warning 1eg0.json: no nucleotides found. Ignoring 1eg0_1_O_1-73.
144 -
145 -4v42_1_BB_5-121
146 -Could not find nucleotides of chain BB in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
147 -
148 4v42_1_BA_1-2914 160 4v42_1_BA_1-2914
149 Could not find nucleotides of chain BA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 161 Could not find nucleotides of chain BA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
150 162
151 4v42_1_BA_151-2903 163 4v42_1_BA_151-2903
152 Could not find nucleotides of chain BA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 164 Could not find nucleotides of chain BA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
153 165
166 +4v48_1_BA_1-91
167 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_1-91.
168 +
169 +4v48_1_BA_6-1541
170 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_6-1541.
171 +
172 +4v48_1_BA_1-1543
173 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_1-1543.
174 +
175 +4v48_1_BA_6-1538
176 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_6-1538.
177 +
178 +4v47_1_BA_1-91
179 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_1-91.
180 +
181 +4v47_1_BA_6-1540
182 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_6-1540.
183 +
184 +4v47_1_BA_1-1542
185 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_1-1542.
186 +
187 +4v47_1_BA_6-1537
188 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_6-1537.
189 +
190 +2rdo_1_B_1-2903
191 +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_1-2903.
192 +
193 +2rdo_1_B_6-1460
194 +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_6-1460.
195 +
196 +2rdo_1_B_1-1528
197 +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_1-1528.
198 +
199 +2rdo_1_B_6-1457
200 +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_6-1457.
201 +
202 +2rdo_1_B_160-2893
203 +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_160-2893.
204 +
205 +2rdo_1_B_1-2904
206 +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_1-2904.
207 +
208 +2rdo_1_B_6-1522
209 +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_6-1522.
210 +
211 +4v48_1_A0_1-2903
212 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_1-2903.
213 +
214 +4v48_1_A0_6-1460
215 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_6-1460.
216 +
217 +4v48_1_A0_1-1528
218 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_1-1528.
219 +
220 +4v48_1_A0_6-1457
221 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_6-1457.
222 +
223 +4v48_1_A0_160-2893
224 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_160-2893.
225 +
226 +4v48_1_A0_1-2904
227 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_1-2904.
228 +
229 +4v48_1_A0_6-1522
230 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_6-1522.
231 +
232 +4v47_1_A0_1-2903
233 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_1-2903.
234 +
235 +4v47_1_A0_6-1460
236 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_6-1460.
237 +
238 +4v47_1_A0_1-1528
239 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_1-1528.
240 +
241 +4v47_1_A0_6-1457
242 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_6-1457.
243 +
244 +4v47_1_A0_160-2893
245 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_160-2893.
246 +
247 +4v47_1_A0_1-2904
248 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_1-2904.
249 +
250 +4v47_1_A0_6-1522
251 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_6-1522.
252 +
154 2ob7_1_A_10-319 253 2ob7_1_A_10-319
155 DSSR warning 2ob7.json: no nucleotides found. Ignoring 2ob7_1_A_10-319. 254 DSSR warning 2ob7.json: no nucleotides found. Ignoring 2ob7_1_A_10-319.
156 255
...@@ -166,158 +265,119 @@ DSSR warning 1zc8.json: no nucleotides found. Ignoring 1zc8_1_Z_1-91. ...@@ -166,158 +265,119 @@ DSSR warning 1zc8.json: no nucleotides found. Ignoring 1zc8_1_Z_1-91.
166 2ob7_1_D_1-130 265 2ob7_1_D_1-130
167 DSSR warning 2ob7.json: no nucleotides found. Ignoring 2ob7_1_D_1-130. 266 DSSR warning 2ob7.json: no nucleotides found. Ignoring 2ob7_1_D_1-130.
168 267
169 -1r2x_1_C_1-58
170 -DSSR warning 1r2x.json: no nucleotides found. Ignoring 1r2x_1_C_1-58.
171 -
172 -1r2w_1_C_1-58
173 -DSSR warning 1r2w.json: no nucleotides found. Ignoring 1r2w_1_C_1-58.
174 -
175 -1eg0_1_L_1-56
176 -DSSR warning 1eg0.json: no nucleotides found. Ignoring 1eg0_1_L_1-56.
177 -
178 -1eg0_1_L_1-57
179 -DSSR warning 1eg0.json: no nucleotides found. Ignoring 1eg0_1_L_1-57.
180 -
181 6rxu_1_C2_588-2386 268 6rxu_1_C2_588-2386
182 Could not find nucleotides of chain C2 in annotation 6rxu.json. Either there is a problem with 6rxu mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 269 Could not find nucleotides of chain C2 in annotation 6rxu.json. Either there is a problem with 6rxu mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
183 270
184 -6rxu_1_C2_588-2383 271 +6rxu_1_C2_583-2388
185 Could not find nucleotides of chain C2 in annotation 6rxu.json. Either there is a problem with 6rxu mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 272 Could not find nucleotides of chain C2 in annotation 6rxu.json. Either there is a problem with 6rxu mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
186 273
187 -6rxu_1_C2_583-2388 274 +6rxu_1_C2_588-2383
188 Could not find nucleotides of chain C2 in annotation 6rxu.json. Either there is a problem with 6rxu mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 275 Could not find nucleotides of chain C2 in annotation 6rxu.json. Either there is a problem with 6rxu mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
189 276
190 5oql_1_2_588-2386 277 5oql_1_2_588-2386
191 Could not find nucleotides of chain 2 in annotation 5oql.json. Either there is a problem with 5oql mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 278 Could not find nucleotides of chain 2 in annotation 5oql.json. Either there is a problem with 5oql mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
192 279
193 -5oql_1_2_588-2383 280 +5oql_1_2_583-2388
194 Could not find nucleotides of chain 2 in annotation 5oql.json. Either there is a problem with 5oql mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 281 Could not find nucleotides of chain 2 in annotation 5oql.json. Either there is a problem with 5oql mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
195 282
196 -5oql_1_2_583-2388 283 +5oql_1_2_588-2383
197 Could not find nucleotides of chain 2 in annotation 5oql.json. Either there is a problem with 5oql mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 284 Could not find nucleotides of chain 2 in annotation 5oql.json. Either there is a problem with 5oql mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
198 285
199 6rxv_1_C2_588-2386 286 6rxv_1_C2_588-2386
200 Could not find nucleotides of chain C2 in annotation 6rxv.json. Either there is a problem with 6rxv mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 287 Could not find nucleotides of chain C2 in annotation 6rxv.json. Either there is a problem with 6rxv mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
201 288
202 -6rxv_1_C2_588-2383 289 +6rxv_1_C2_583-2388
203 Could not find nucleotides of chain C2 in annotation 6rxv.json. Either there is a problem with 6rxv mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 290 Could not find nucleotides of chain C2 in annotation 6rxv.json. Either there is a problem with 6rxv mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
204 291
205 -6rxv_1_C2_583-2388 292 +6rxv_1_C2_588-2383
206 Could not find nucleotides of chain C2 in annotation 6rxv.json. Either there is a problem with 6rxv mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 293 Could not find nucleotides of chain C2 in annotation 6rxv.json. Either there is a problem with 6rxv mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
207 294
208 6rxz_1_C2_588-2386 295 6rxz_1_C2_588-2386
209 Could not find nucleotides of chain C2 in annotation 6rxz.json. Either there is a problem with 6rxz mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 296 Could not find nucleotides of chain C2 in annotation 6rxz.json. Either there is a problem with 6rxz mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
210 297
211 -6rxz_1_C2_588-2383 298 +6rxz_1_C2_583-2388
212 Could not find nucleotides of chain C2 in annotation 6rxz.json. Either there is a problem with 6rxz mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 299 Could not find nucleotides of chain C2 in annotation 6rxz.json. Either there is a problem with 6rxz mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
213 300
214 -6rxz_1_C2_583-2388 301 +6rxz_1_C2_588-2383
215 Could not find nucleotides of chain C2 in annotation 6rxz.json. Either there is a problem with 6rxz mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 302 Could not find nucleotides of chain C2 in annotation 6rxz.json. Either there is a problem with 6rxz mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
216 303
217 6rxy_1_C2_588-2386 304 6rxy_1_C2_588-2386
218 Could not find nucleotides of chain C2 in annotation 6rxy.json. Either there is a problem with 6rxy mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 305 Could not find nucleotides of chain C2 in annotation 6rxy.json. Either there is a problem with 6rxy mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
219 306
220 -6rxy_1_C2_588-2383 307 +6rxy_1_C2_583-2388
221 Could not find nucleotides of chain C2 in annotation 6rxy.json. Either there is a problem with 6rxy mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 308 Could not find nucleotides of chain C2 in annotation 6rxy.json. Either there is a problem with 6rxy mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
222 309
223 -6rxy_1_C2_583-2388 310 +6rxy_1_C2_588-2383
224 Could not find nucleotides of chain C2 in annotation 6rxy.json. Either there is a problem with 6rxy mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 311 Could not find nucleotides of chain C2 in annotation 6rxy.json. Either there is a problem with 6rxy mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
225 312
226 6rxt_1_C2_588-2386 313 6rxt_1_C2_588-2386
227 Could not find nucleotides of chain C2 in annotation 6rxt.json. Either there is a problem with 6rxt mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 314 Could not find nucleotides of chain C2 in annotation 6rxt.json. Either there is a problem with 6rxt mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
228 315
229 -6rxt_1_C2_588-2383
230 -Could not find nucleotides of chain C2 in annotation 6rxt.json. Either there is a problem with 6rxt mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
231 -
232 6rxt_1_C2_583-2388 316 6rxt_1_C2_583-2388
233 Could not find nucleotides of chain C2 in annotation 6rxt.json. Either there is a problem with 6rxt mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 317 Could not find nucleotides of chain C2 in annotation 6rxt.json. Either there is a problem with 6rxt mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
234 318
235 -4v48_1_BA_1-91 319 +6rxt_1_C2_588-2383
236 -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_1-91. 320 +Could not find nucleotides of chain C2 in annotation 6rxt.json. Either there is a problem with 6rxt mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
237 -
238 -4v48_1_BA_6-1541
239 -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_6-1541.
240 -
241 -4v48_1_BA_6-1538
242 -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_6-1538.
243 -
244 -4v48_1_BA_1-1543
245 -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_1-1543.
246 -
247 -4v47_1_BA_1-91
248 -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_1-91.
249 -
250 -4v47_1_BA_6-1540
251 -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_6-1540.
252 -
253 -4v47_1_BA_6-1537
254 -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_6-1537.
255 -
256 -4v47_1_BA_1-1542
257 -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_1-1542.
258 -
259 -2rdo_1_B_6-1460
260 -DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_6-1460.
261 321
262 -2rdo_1_B_6-1522 322 +1r2x_1_C_1-58
263 -DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_6-1522. 323 +DSSR warning 1r2x.json: no nucleotides found. Ignoring 1r2x_1_C_1-58.
264 324
265 -2rdo_1_B_1-2903 325 +1r2w_1_C_1-58
266 -DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_1-2903. 326 +DSSR warning 1r2w.json: no nucleotides found. Ignoring 1r2w_1_C_1-58.
267 327
268 -2rdo_1_B_6-1457 328 +1eg0_1_L_1-57
269 -DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_6-1457. 329 +DSSR warning 1eg0.json: no nucleotides found. Ignoring 1eg0_1_L_1-57.
270 330
271 -2rdo_1_B_1-2904 331 +1eg0_1_L_1-56
272 -DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_1-2904. 332 +DSSR warning 1eg0.json: no nucleotides found. Ignoring 1eg0_1_L_1-56.
273 333
274 -2rdo_1_B_1-1528 334 +1jgq_1_A_7-1518
275 -DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_1-1528. 335 +Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
276 336
277 -2rdo_1_B_160-2893 337 +1jgq_1_A_20-55
278 -DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_160-2893. 338 +Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
279 339
280 -4v48_1_A0_6-1460 340 +1jgq_1_A_2-1520
281 -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_6-1460. 341 +Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
282 342
283 -4v48_1_A0_6-1522 343 +1jgq_1_A_7-1515
284 -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_6-1522. 344 +Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
285 345
286 -4v48_1_A0_1-2903 346 +4v42_1_AA_7-1518
287 -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_1-2903. 347 +Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
288 348
289 -4v48_1_A0_6-1457 349 +4v42_1_AA_20-55
290 -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_6-1457. 350 +Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
291 351
292 -4v48_1_A0_1-2904 352 +4v42_1_AA_2-1520
293 -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_1-2904. 353 +Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
294 354
295 -4v48_1_A0_1-1528 355 +4v42_1_AA_7-1515
296 -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_1-1528. 356 +Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
297 357
298 -4v48_1_A0_160-2893 358 +1jgo_1_A_7-1518
299 -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_160-2893. 359 +Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
300 360
301 -4v47_1_A0_6-1460 361 +1jgo_1_A_20-55
302 -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_6-1460. 362 +Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
303 363
304 -4v47_1_A0_6-1522 364 +1jgo_1_A_2-1520
305 -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_6-1522. 365 +Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
306 366
307 -4v47_1_A0_1-2903 367 +1jgo_1_A_7-1515
308 -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_1-2903. 368 +Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
309 369
310 -4v47_1_A0_6-1457 370 +1jgp_1_A_7-1518
311 -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_6-1457. 371 +Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
312 372
313 -4v47_1_A0_1-2904 373 +1jgp_1_A_20-55
314 -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_1-2904. 374 +Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
315 375
316 -4v47_1_A0_1-1528 376 +1jgp_1_A_2-1520
317 -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_1-1528. 377 +Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
318 378
319 -4v47_1_A0_160-2893 379 +1jgp_1_A_7-1515
320 -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_160-2893. 380 +Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
321 381
322 1zc8_1_A_1-59 382 1zc8_1_A_1-59
323 DSSR warning 1zc8.json: no nucleotides found. Ignoring 1zc8_1_A_1-59. 383 DSSR warning 1zc8.json: no nucleotides found. Ignoring 1zc8_1_A_1-59.
...@@ -343,54 +403,6 @@ DSSR warning 1emi.json: no nucleotides found. Ignoring 1emi_1_B_1-108. ...@@ -343,54 +403,6 @@ DSSR warning 1emi.json: no nucleotides found. Ignoring 1emi_1_B_1-108.
343 3iy9_1_A_498-1027 403 3iy9_1_A_498-1027
344 DSSR warning 3iy9.json: no nucleotides found. Ignoring 3iy9_1_A_498-1027. 404 DSSR warning 3iy9.json: no nucleotides found. Ignoring 3iy9_1_A_498-1027.
345 405
346 -1jgq_1_A_20-55
347 -Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
348 -
349 -1jgq_1_A_7-1518
350 -Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
351 -
352 -1jgq_1_A_7-1515
353 -Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
354 -
355 -1jgq_1_A_2-1520
356 -Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
357 -
358 -4v42_1_AA_20-55
359 -Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
360 -
361 -4v42_1_AA_7-1518
362 -Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
363 -
364 -4v42_1_AA_7-1515
365 -Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
366 -
367 -4v42_1_AA_2-1520
368 -Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
369 -
370 -1jgo_1_A_20-55
371 -Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
372 -
373 -1jgo_1_A_7-1518
374 -Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
375 -
376 -1jgo_1_A_7-1515
377 -Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
378 -
379 -1jgo_1_A_2-1520
380 -Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
381 -
382 -1jgp_1_A_20-55
383 -Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
384 -
385 -1jgp_1_A_7-1518
386 -Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
387 -
388 -1jgp_1_A_7-1515
389 -Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
390 -
391 -1jgp_1_A_2-1520
392 -Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
393 -
394 3ep2_1_B_1-50 406 3ep2_1_B_1-50
395 DSSR warning 3ep2.json: no nucleotides found. Ignoring 3ep2_1_B_1-50. 407 DSSR warning 3ep2.json: no nucleotides found. Ignoring 3ep2_1_B_1-50.
396 408
...@@ -421,35 +433,32 @@ DSSR warning 3cw1.json: no nucleotides found. Ignoring 3cw1_1_v_1-138. ...@@ -421,35 +433,32 @@ DSSR warning 3cw1.json: no nucleotides found. Ignoring 3cw1_1_v_1-138.
421 2iy3_1_B_9-105 433 2iy3_1_B_9-105
422 DSSR warning 2iy3.json: no nucleotides found. Ignoring 2iy3_1_B_9-105. 434 DSSR warning 2iy3.json: no nucleotides found. Ignoring 2iy3_1_B_9-105.
423 435
424 -3jcr_1_N_1-106
425 -DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_N_1-106.
426 -
427 3jcr_1_N_1-188 436 3jcr_1_N_1-188
428 DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_N_1-188. 437 DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_N_1-188.
429 438
439 +3jcr_1_N_1-106
440 +DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_N_1-106.
441 +
430 2vaz_1_A_64-177 442 2vaz_1_A_64-177
431 DSSR warning 2vaz.json: no nucleotides found. Ignoring 2vaz_1_A_64-177. 443 DSSR warning 2vaz.json: no nucleotides found. Ignoring 2vaz_1_A_64-177.
432 444
433 -2ftc_1_R_81-1466
434 -DSSR warning 2ftc.json: no nucleotides found. Ignoring 2ftc_1_R_81-1466.
435 -
436 2ftc_1_R_1-1568 445 2ftc_1_R_1-1568
437 DSSR warning 2ftc.json: no nucleotides found. Ignoring 2ftc_1_R_1-1568. 446 DSSR warning 2ftc.json: no nucleotides found. Ignoring 2ftc_1_R_1-1568.
438 447
439 2ftc_1_R_792-1568 448 2ftc_1_R_792-1568
440 DSSR warning 2ftc.json: no nucleotides found. Ignoring 2ftc_1_R_792-1568. 449 DSSR warning 2ftc.json: no nucleotides found. Ignoring 2ftc_1_R_792-1568.
441 450
451 +2ftc_1_R_81-1466
452 +DSSR warning 2ftc.json: no nucleotides found. Ignoring 2ftc_1_R_81-1466.
453 +
442 3jcr_1_M_1-141 454 3jcr_1_M_1-141
443 DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_M_1-141. 455 DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_M_1-141.
444 456
445 -3jcr_1_M_1-107
446 -DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_M_1-107.
447 -
448 3jcr_1_M_1-188 457 3jcr_1_M_1-188
449 DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_M_1-188. 458 DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_M_1-188.
450 459
451 -4v5z_1_B0_1-2840 460 +3jcr_1_M_1-107
452 -DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2840. 461 +DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_M_1-107.
453 462
454 4v5z_1_B0_1-2899 463 4v5z_1_B0_1-2899
455 DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2899. 464 DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2899.
...@@ -457,6 +466,9 @@ DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2899. ...@@ -457,6 +466,9 @@ DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2899.
457 4v5z_1_B0_1-2902 466 4v5z_1_B0_1-2902
458 DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2902. 467 DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2902.
459 468
469 +4v5z_1_B0_1-2840
470 +DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2840.
471 +
460 5g2x_1_A_595-692 472 5g2x_1_A_595-692
461 Sequence is too short. (< 5 resolved nts) 473 Sequence is too short. (< 5 resolved nts)
462 474
...@@ -481,21 +493,9 @@ DSSR warning 4adx.json: no nucleotides found. Ignoring 4adx_1_0_132-2915. ...@@ -481,21 +493,9 @@ DSSR warning 4adx.json: no nucleotides found. Ignoring 4adx_1_0_132-2915.
481 3eq4_1_Y_1-69 493 3eq4_1_Y_1-69
482 DSSR warning 3eq4.json: no nucleotides found. Ignoring 3eq4_1_Y_1-69. 494 DSSR warning 3eq4.json: no nucleotides found. Ignoring 3eq4_1_Y_1-69.
483 495
484 -4v5z_1_AA_1-1562
485 -DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_AA_1-1562.
486 -
487 4v5z_1_AA_1-1563 496 4v5z_1_AA_1-1563
488 DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_AA_1-1563. 497 DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_AA_1-1563.
489 498
490 -6lqm_1_8_1267-4755 499 +4v5z_1_AA_1-1562
491 -Could not find nucleotides of chain 8 in annotation 6lqm.json. Either there is a problem with 6lqm mmCIF download, or the bases are not resolved in the structure. Delete it and retry. 500 +DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_AA_1-1562.
492 -
493 -6lu8_1_8_1267-4755
494 -Could not find nucleotides of chain 8 in annotation 6lu8.json. Either there is a problem with 6lu8 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
495 -
496 -6lsr_1_8_1267-4755
497 -Could not find nucleotides of chain 8 in annotation 6lsr.json. Either there is a problem with 6lsr mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
498 -
499 -6lss_1_8_1267-4755
500 -Could not find nucleotides of chain 8 in annotation 6lss.json. Either there is a problem with 6lss mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
501 501
......
...@@ -3,13 +3,8 @@ import subprocess, os, sys ...@@ -3,13 +3,8 @@ import subprocess, os, sys
3 3
4 # Put a list of problematic chains here, they will be properly deleted and recomputed 4 # Put a list of problematic chains here, they will be properly deleted and recomputed
5 problems = [ 5 problems = [
6 -"4v7f_1_1_4-3396", 6 +"4v9n_1_DA_1-2879",
7 -"4v7f_1_1_1-3167", 7 +"4v9n_1_DA_148-2875"
8 -"4v7f_1_1_1-3255",
9 -"6g90_1_1_1-407",
10 -"3q3z_1_A_1-74",
11 -"3q3z_1_V_1-74",
12 -"4v7f_1_3_1-121"
13 ] 8 ]
14 9
15 path_to_3D_data = sys.argv[1] 10 path_to_3D_data = sys.argv[1]
......
...@@ -613,7 +613,7 @@ if __name__ == "__main__": ...@@ -613,7 +613,7 @@ if __name__ == "__main__":
613 613
614 p = Pool(initializer=init_worker, initargs=(tqdm.get_lock(),), processes=nworkers) 614 p = Pool(initializer=init_worker, initargs=(tqdm.get_lock(),), processes=nworkers)
615 pbar = tqdm(total=len(joblist), desc="Stat jobs", position=0, leave=True) 615 pbar = tqdm(total=len(joblist), desc="Stat jobs", position=0, leave=True)
616 -sqlite3 616 +
617 try: 617 try:
618 for j in joblist: 618 for j in joblist:
619 p.apply_async(j.func_, args=j.args_, callback=log_to_pbar(pbar)) 619 p.apply_async(j.func_, args=j.args_, callback=log_to_pbar(pbar))
......