Showing
4 changed files
with
255 additions
and
260 deletions
1 | 1ml5_1_a_1-2914 | 1 | 1ml5_1_a_1-2914 |
2 | 1ml5_1_a_151-2903 | 2 | 1ml5_1_a_151-2903 |
3 | -1ml5_1_A_7-1518 | ||
4 | 1ml5_1_A_7-1515 | 3 | 1ml5_1_A_7-1515 |
5 | 1ml5_1_A_2-1520 | 4 | 1ml5_1_A_2-1520 |
5 | +1ml5_1_A_7-1518 | ||
6 | 1ml5_1_b_5-121 | 6 | 1ml5_1_b_5-121 |
7 | 2rdo_1_A_3-118 | 7 | 2rdo_1_A_3-118 |
8 | 4v48_1_A9_3-118 | 8 | 4v48_1_A9_3-118 |
9 | 4v47_1_A9_3-118 | 9 | 4v47_1_A9_3-118 |
10 | -1vy7_1_AY_1-73 | ||
11 | -1vy7_1_CY_1-73 | ||
12 | -4w2h_1_CY_1-73 | ||
13 | 6zmi_1_L8_1267-4755 | 10 | 6zmi_1_L8_1267-4755 |
14 | 6zm7_1_L8_1267-4755 | 11 | 6zm7_1_L8_1267-4755 |
15 | 6y6x_1_L8_1267-4755 | 12 | 6y6x_1_L8_1267-4755 |
... | @@ -23,7 +20,11 @@ | ... | @@ -23,7 +20,11 @@ |
23 | 6ole_1_D_1267-4755 | 20 | 6ole_1_D_1267-4755 |
24 | 6om0_1_D_1267-4755 | 21 | 6om0_1_D_1267-4755 |
25 | 6y2l_1_L8_1267-4755 | 22 | 6y2l_1_L8_1267-4755 |
23 | +6lqm_1_8_1267-4755 | ||
26 | 6y0g_1_L8_1267-4755 | 24 | 6y0g_1_L8_1267-4755 |
25 | +6lu8_1_8_1267-4755 | ||
26 | +6lsr_1_8_1267-4755 | ||
27 | +6lss_1_8_1267-4755 | ||
27 | 6oli_1_D_1267-4755 | 28 | 6oli_1_D_1267-4755 |
28 | 6olg_1_A3_1267-4755 | 29 | 6olg_1_A3_1267-4755 |
29 | 6y57_1_L8_1267-4755 | 30 | 6y57_1_L8_1267-4755 |
... | @@ -38,97 +39,100 @@ | ... | @@ -38,97 +39,100 @@ |
38 | 5lks_1_L8_1267-4755 | 39 | 5lks_1_L8_1267-4755 |
39 | 6ip6_1_1C_1267-4755 | 40 | 6ip6_1_1C_1267-4755 |
40 | 4v6x_1_A8_1267-4755 | 41 | 4v6x_1_A8_1267-4755 |
42 | +1vy7_1_AY_1-73 | ||
43 | +1vy7_1_CY_1-73 | ||
44 | +4w2h_1_CY_1-73 | ||
41 | 2z9q_1_A_1-72 | 45 | 2z9q_1_A_1-72 |
46 | +4v42_1_BB_5-121 | ||
42 | 1ls2_1_B_1-73 | 47 | 1ls2_1_B_1-73 |
43 | 3ep2_1_Y_1-72 | 48 | 3ep2_1_Y_1-72 |
44 | 3eq3_1_Y_1-72 | 49 | 3eq3_1_Y_1-72 |
45 | 4v48_1_A6_1-73 | 50 | 4v48_1_A6_1-73 |
51 | +1eg0_1_O_1-73 | ||
46 | 1gsg_1_T_1-72 | 52 | 1gsg_1_T_1-72 |
47 | 3jcr_1_H_1-115 | 53 | 3jcr_1_H_1-115 |
48 | -1eg0_1_O_1-73 | ||
49 | -4v42_1_BB_5-121 | ||
50 | 4v42_1_BA_1-2914 | 54 | 4v42_1_BA_1-2914 |
51 | 4v42_1_BA_151-2903 | 55 | 4v42_1_BA_151-2903 |
56 | +4v48_1_BA_1-91 | ||
57 | +4v48_1_BA_6-1541 | ||
58 | +4v48_1_BA_1-1543 | ||
59 | +4v48_1_BA_6-1538 | ||
60 | +4v47_1_BA_1-91 | ||
61 | +4v47_1_BA_6-1540 | ||
62 | +4v47_1_BA_1-1542 | ||
63 | +4v47_1_BA_6-1537 | ||
64 | +2rdo_1_B_1-2903 | ||
65 | +2rdo_1_B_6-1460 | ||
66 | +2rdo_1_B_1-1528 | ||
67 | +2rdo_1_B_6-1457 | ||
68 | +2rdo_1_B_160-2893 | ||
69 | +2rdo_1_B_1-2904 | ||
70 | +2rdo_1_B_6-1522 | ||
71 | +4v48_1_A0_1-2903 | ||
72 | +4v48_1_A0_6-1460 | ||
73 | +4v48_1_A0_1-1528 | ||
74 | +4v48_1_A0_6-1457 | ||
75 | +4v48_1_A0_160-2893 | ||
76 | +4v48_1_A0_1-2904 | ||
77 | +4v48_1_A0_6-1522 | ||
78 | +4v47_1_A0_1-2903 | ||
79 | +4v47_1_A0_6-1460 | ||
80 | +4v47_1_A0_1-1528 | ||
81 | +4v47_1_A0_6-1457 | ||
82 | +4v47_1_A0_160-2893 | ||
83 | +4v47_1_A0_1-2904 | ||
84 | +4v47_1_A0_6-1522 | ||
52 | 2ob7_1_A_10-319 | 85 | 2ob7_1_A_10-319 |
53 | 1x1l_1_A_1-130 | 86 | 1x1l_1_A_1-130 |
54 | 1zc8_1_Z_1-130 | 87 | 1zc8_1_Z_1-130 |
55 | 1zc8_1_Z_1-91 | 88 | 1zc8_1_Z_1-91 |
56 | 2ob7_1_D_1-130 | 89 | 2ob7_1_D_1-130 |
57 | -1r2x_1_C_1-58 | ||
58 | -1r2w_1_C_1-58 | ||
59 | -1eg0_1_L_1-56 | ||
60 | -1eg0_1_L_1-57 | ||
61 | 6rxu_1_C2_588-2386 | 90 | 6rxu_1_C2_588-2386 |
62 | -6rxu_1_C2_588-2383 | ||
63 | 6rxu_1_C2_583-2388 | 91 | 6rxu_1_C2_583-2388 |
92 | +6rxu_1_C2_588-2383 | ||
64 | 5oql_1_2_588-2386 | 93 | 5oql_1_2_588-2386 |
65 | -5oql_1_2_588-2383 | ||
66 | 5oql_1_2_583-2388 | 94 | 5oql_1_2_583-2388 |
95 | +5oql_1_2_588-2383 | ||
67 | 6rxv_1_C2_588-2386 | 96 | 6rxv_1_C2_588-2386 |
68 | -6rxv_1_C2_588-2383 | ||
69 | 6rxv_1_C2_583-2388 | 97 | 6rxv_1_C2_583-2388 |
98 | +6rxv_1_C2_588-2383 | ||
70 | 6rxz_1_C2_588-2386 | 99 | 6rxz_1_C2_588-2386 |
71 | -6rxz_1_C2_588-2383 | ||
72 | 6rxz_1_C2_583-2388 | 100 | 6rxz_1_C2_583-2388 |
101 | +6rxz_1_C2_588-2383 | ||
73 | 6rxy_1_C2_588-2386 | 102 | 6rxy_1_C2_588-2386 |
74 | -6rxy_1_C2_588-2383 | ||
75 | 6rxy_1_C2_583-2388 | 103 | 6rxy_1_C2_583-2388 |
104 | +6rxy_1_C2_588-2383 | ||
76 | 6rxt_1_C2_588-2386 | 105 | 6rxt_1_C2_588-2386 |
77 | -6rxt_1_C2_588-2383 | ||
78 | 6rxt_1_C2_583-2388 | 106 | 6rxt_1_C2_583-2388 |
79 | -4v48_1_BA_1-91 | 107 | +6rxt_1_C2_588-2383 |
80 | -4v48_1_BA_6-1541 | 108 | +1r2x_1_C_1-58 |
81 | -4v48_1_BA_6-1538 | 109 | +1r2w_1_C_1-58 |
82 | -4v48_1_BA_1-1543 | 110 | +1eg0_1_L_1-57 |
83 | -4v47_1_BA_1-91 | 111 | +1eg0_1_L_1-56 |
84 | -4v47_1_BA_6-1540 | ||
85 | -4v47_1_BA_6-1537 | ||
86 | -4v47_1_BA_1-1542 | ||
87 | -2rdo_1_B_6-1460 | ||
88 | -2rdo_1_B_6-1522 | ||
89 | -2rdo_1_B_1-2903 | ||
90 | -2rdo_1_B_6-1457 | ||
91 | -2rdo_1_B_1-2904 | ||
92 | -2rdo_1_B_1-1528 | ||
93 | -2rdo_1_B_160-2893 | ||
94 | -4v48_1_A0_6-1460 | ||
95 | -4v48_1_A0_6-1522 | ||
96 | -4v48_1_A0_1-2903 | ||
97 | -4v48_1_A0_6-1457 | ||
98 | -4v48_1_A0_1-2904 | ||
99 | -4v48_1_A0_1-1528 | ||
100 | -4v48_1_A0_160-2893 | ||
101 | -4v47_1_A0_6-1460 | ||
102 | -4v47_1_A0_6-1522 | ||
103 | -4v47_1_A0_1-2903 | ||
104 | -4v47_1_A0_6-1457 | ||
105 | -4v47_1_A0_1-2904 | ||
106 | -4v47_1_A0_1-1528 | ||
107 | -4v47_1_A0_160-2893 | ||
108 | -1zc8_1_A_1-59 | ||
109 | -1mvr_1_D_1-59 | ||
110 | -4c9d_1_D_29-1 | ||
111 | -4c9d_1_C_29-1 | ||
112 | -4adx_1_9_1-121 | ||
113 | -1zn1_1_B_1-59 | ||
114 | -1emi_1_B_1-108 | ||
115 | -3iy9_1_A_498-1027 | ||
116 | -1jgq_1_A_20-55 | ||
117 | 1jgq_1_A_7-1518 | 112 | 1jgq_1_A_7-1518 |
118 | -1jgq_1_A_7-1515 | 113 | +1jgq_1_A_20-55 |
119 | 1jgq_1_A_2-1520 | 114 | 1jgq_1_A_2-1520 |
120 | -4v42_1_AA_20-55 | 115 | +1jgq_1_A_7-1515 |
121 | 4v42_1_AA_7-1518 | 116 | 4v42_1_AA_7-1518 |
122 | -4v42_1_AA_7-1515 | 117 | +4v42_1_AA_20-55 |
123 | 4v42_1_AA_2-1520 | 118 | 4v42_1_AA_2-1520 |
124 | -1jgo_1_A_20-55 | 119 | +4v42_1_AA_7-1515 |
125 | 1jgo_1_A_7-1518 | 120 | 1jgo_1_A_7-1518 |
126 | -1jgo_1_A_7-1515 | 121 | +1jgo_1_A_20-55 |
127 | 1jgo_1_A_2-1520 | 122 | 1jgo_1_A_2-1520 |
128 | -1jgp_1_A_20-55 | 123 | +1jgo_1_A_7-1515 |
129 | 1jgp_1_A_7-1518 | 124 | 1jgp_1_A_7-1518 |
130 | -1jgp_1_A_7-1515 | 125 | +1jgp_1_A_20-55 |
131 | 1jgp_1_A_2-1520 | 126 | 1jgp_1_A_2-1520 |
127 | +1jgp_1_A_7-1515 | ||
128 | +1zc8_1_A_1-59 | ||
129 | +1mvr_1_D_1-59 | ||
130 | +4c9d_1_D_29-1 | ||
131 | +4c9d_1_C_29-1 | ||
132 | +4adx_1_9_1-121 | ||
133 | +1zn1_1_B_1-59 | ||
134 | +1emi_1_B_1-108 | ||
135 | +3iy9_1_A_498-1027 | ||
132 | 3ep2_1_B_1-50 | 136 | 3ep2_1_B_1-50 |
133 | 3eq3_1_B_1-50 | 137 | 3eq3_1_B_1-50 |
134 | 3eq4_1_B_1-50 | 138 | 3eq4_1_B_1-50 |
... | @@ -139,18 +143,18 @@ | ... | @@ -139,18 +143,18 @@ |
139 | 3cw1_1_V_1-138 | 143 | 3cw1_1_V_1-138 |
140 | 3cw1_1_v_1-138 | 144 | 3cw1_1_v_1-138 |
141 | 2iy3_1_B_9-105 | 145 | 2iy3_1_B_9-105 |
142 | -3jcr_1_N_1-106 | ||
143 | 3jcr_1_N_1-188 | 146 | 3jcr_1_N_1-188 |
147 | +3jcr_1_N_1-106 | ||
144 | 2vaz_1_A_64-177 | 148 | 2vaz_1_A_64-177 |
145 | -2ftc_1_R_81-1466 | ||
146 | 2ftc_1_R_1-1568 | 149 | 2ftc_1_R_1-1568 |
147 | 2ftc_1_R_792-1568 | 150 | 2ftc_1_R_792-1568 |
151 | +2ftc_1_R_81-1466 | ||
148 | 3jcr_1_M_1-141 | 152 | 3jcr_1_M_1-141 |
149 | -3jcr_1_M_1-107 | ||
150 | 3jcr_1_M_1-188 | 153 | 3jcr_1_M_1-188 |
151 | -4v5z_1_B0_1-2840 | 154 | +3jcr_1_M_1-107 |
152 | 4v5z_1_B0_1-2899 | 155 | 4v5z_1_B0_1-2899 |
153 | 4v5z_1_B0_1-2902 | 156 | 4v5z_1_B0_1-2902 |
157 | +4v5z_1_B0_1-2840 | ||
154 | 5g2x_1_A_595-692 | 158 | 5g2x_1_A_595-692 |
155 | 3iy8_1_A_1-540 | 159 | 3iy8_1_A_1-540 |
156 | 4v5z_1_BY_2-113 | 160 | 4v5z_1_BY_2-113 |
... | @@ -159,9 +163,5 @@ | ... | @@ -159,9 +163,5 @@ |
159 | 4adx_1_0_1-2923 | 163 | 4adx_1_0_1-2923 |
160 | 4adx_1_0_132-2915 | 164 | 4adx_1_0_132-2915 |
161 | 3eq4_1_Y_1-69 | 165 | 3eq4_1_Y_1-69 |
162 | -4v5z_1_AA_1-1562 | ||
163 | 4v5z_1_AA_1-1563 | 166 | 4v5z_1_AA_1-1563 |
164 | -6lqm_1_8_1267-4755 | 167 | +4v5z_1_AA_1-1562 |
165 | -6lu8_1_8_1267-4755 | ||
166 | -6lsr_1_8_1267-4755 | ||
167 | -6lss_1_8_1267-4755 | ... | ... |
... | @@ -4,15 +4,15 @@ Could not find nucleotides of chain a in annotation 1ml5.json. Either there is a | ... | @@ -4,15 +4,15 @@ Could not find nucleotides of chain a in annotation 1ml5.json. Either there is a |
4 | 1ml5_1_a_151-2903 | 4 | 1ml5_1_a_151-2903 |
5 | Could not find nucleotides of chain a in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 5 | Could not find nucleotides of chain a in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
6 | 6 | ||
7 | -1ml5_1_A_7-1518 | ||
8 | -Could not find nucleotides of chain A in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
9 | - | ||
10 | 1ml5_1_A_7-1515 | 7 | 1ml5_1_A_7-1515 |
11 | Could not find nucleotides of chain A in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 8 | Could not find nucleotides of chain A in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
12 | 9 | ||
13 | 1ml5_1_A_2-1520 | 10 | 1ml5_1_A_2-1520 |
14 | Could not find nucleotides of chain A in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 11 | Could not find nucleotides of chain A in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
15 | 12 | ||
13 | +1ml5_1_A_7-1518 | ||
14 | +Could not find nucleotides of chain A in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
15 | + | ||
16 | 1ml5_1_b_5-121 | 16 | 1ml5_1_b_5-121 |
17 | Could not find nucleotides of chain b in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 17 | Could not find nucleotides of chain b in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
18 | 18 | ||
... | @@ -25,15 +25,6 @@ DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A9_3-118. | ... | @@ -25,15 +25,6 @@ DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A9_3-118. |
25 | 4v47_1_A9_3-118 | 25 | 4v47_1_A9_3-118 |
26 | DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A9_3-118. | 26 | DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A9_3-118. |
27 | 27 | ||
28 | -1vy7_1_AY_1-73 | ||
29 | -Sequence is too short. (< 5 resolved nts) | ||
30 | - | ||
31 | -1vy7_1_CY_1-73 | ||
32 | -Sequence is too short. (< 5 resolved nts) | ||
33 | - | ||
34 | -4w2h_1_CY_1-73 | ||
35 | -Sequence is too short. (< 5 resolved nts) | ||
36 | - | ||
37 | 6zmi_1_L8_1267-4755 | 28 | 6zmi_1_L8_1267-4755 |
38 | Could not find nucleotides of chain L8 in annotation 6zmi.json. Either there is a problem with 6zmi mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 29 | Could not find nucleotides of chain L8 in annotation 6zmi.json. Either there is a problem with 6zmi mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
39 | 30 | ||
... | @@ -73,9 +64,21 @@ Could not find nucleotides of chain D in annotation 6om0.json. Either there is a | ... | @@ -73,9 +64,21 @@ Could not find nucleotides of chain D in annotation 6om0.json. Either there is a |
73 | 6y2l_1_L8_1267-4755 | 64 | 6y2l_1_L8_1267-4755 |
74 | Could not find nucleotides of chain L8 in annotation 6y2l.json. Either there is a problem with 6y2l mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 65 | Could not find nucleotides of chain L8 in annotation 6y2l.json. Either there is a problem with 6y2l mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
75 | 66 | ||
67 | +6lqm_1_8_1267-4755 | ||
68 | +Could not find nucleotides of chain 8 in annotation 6lqm.json. Either there is a problem with 6lqm mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
69 | + | ||
76 | 6y0g_1_L8_1267-4755 | 70 | 6y0g_1_L8_1267-4755 |
77 | Could not find nucleotides of chain L8 in annotation 6y0g.json. Either there is a problem with 6y0g mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 71 | Could not find nucleotides of chain L8 in annotation 6y0g.json. Either there is a problem with 6y0g mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
78 | 72 | ||
73 | +6lu8_1_8_1267-4755 | ||
74 | +Could not find nucleotides of chain 8 in annotation 6lu8.json. Either there is a problem with 6lu8 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
75 | + | ||
76 | +6lsr_1_8_1267-4755 | ||
77 | +Could not find nucleotides of chain 8 in annotation 6lsr.json. Either there is a problem with 6lsr mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
78 | + | ||
79 | +6lss_1_8_1267-4755 | ||
80 | +Could not find nucleotides of chain 8 in annotation 6lss.json. Either there is a problem with 6lss mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
81 | + | ||
79 | 6oli_1_D_1267-4755 | 82 | 6oli_1_D_1267-4755 |
80 | Could not find nucleotides of chain D in annotation 6oli.json. Either there is a problem with 6oli mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 83 | Could not find nucleotides of chain D in annotation 6oli.json. Either there is a problem with 6oli mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
81 | 84 | ||
... | @@ -118,9 +121,21 @@ Could not find nucleotides of chain 1C in annotation 6ip6.json. Either there is | ... | @@ -118,9 +121,21 @@ Could not find nucleotides of chain 1C in annotation 6ip6.json. Either there is |
118 | 4v6x_1_A8_1267-4755 | 121 | 4v6x_1_A8_1267-4755 |
119 | Could not find nucleotides of chain A8 in annotation 4v6x.json. Either there is a problem with 4v6x mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 122 | Could not find nucleotides of chain A8 in annotation 4v6x.json. Either there is a problem with 4v6x mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
120 | 123 | ||
124 | +1vy7_1_AY_1-73 | ||
125 | +Sequence is too short. (< 5 resolved nts) | ||
126 | + | ||
127 | +1vy7_1_CY_1-73 | ||
128 | +Sequence is too short. (< 5 resolved nts) | ||
129 | + | ||
130 | +4w2h_1_CY_1-73 | ||
131 | +Sequence is too short. (< 5 resolved nts) | ||
132 | + | ||
121 | 2z9q_1_A_1-72 | 133 | 2z9q_1_A_1-72 |
122 | DSSR warning 2z9q.json: no nucleotides found. Ignoring 2z9q_1_A_1-72. | 134 | DSSR warning 2z9q.json: no nucleotides found. Ignoring 2z9q_1_A_1-72. |
123 | 135 | ||
136 | +4v42_1_BB_5-121 | ||
137 | +Could not find nucleotides of chain BB in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
138 | + | ||
124 | 1ls2_1_B_1-73 | 139 | 1ls2_1_B_1-73 |
125 | DSSR warning 1ls2.json: no nucleotides found. Ignoring 1ls2_1_B_1-73. | 140 | DSSR warning 1ls2.json: no nucleotides found. Ignoring 1ls2_1_B_1-73. |
126 | 141 | ||
... | @@ -133,24 +148,108 @@ DSSR warning 3eq3.json: no nucleotides found. Ignoring 3eq3_1_Y_1-72. | ... | @@ -133,24 +148,108 @@ DSSR warning 3eq3.json: no nucleotides found. Ignoring 3eq3_1_Y_1-72. |
133 | 4v48_1_A6_1-73 | 148 | 4v48_1_A6_1-73 |
134 | DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A6_1-73. | 149 | DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A6_1-73. |
135 | 150 | ||
151 | +1eg0_1_O_1-73 | ||
152 | +DSSR warning 1eg0.json: no nucleotides found. Ignoring 1eg0_1_O_1-73. | ||
153 | + | ||
136 | 1gsg_1_T_1-72 | 154 | 1gsg_1_T_1-72 |
137 | DSSR warning 1gsg.json: no nucleotides found. Ignoring 1gsg_1_T_1-72. | 155 | DSSR warning 1gsg.json: no nucleotides found. Ignoring 1gsg_1_T_1-72. |
138 | 156 | ||
139 | 3jcr_1_H_1-115 | 157 | 3jcr_1_H_1-115 |
140 | DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_H_1-115. | 158 | DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_H_1-115. |
141 | 159 | ||
142 | -1eg0_1_O_1-73 | ||
143 | -DSSR warning 1eg0.json: no nucleotides found. Ignoring 1eg0_1_O_1-73. | ||
144 | - | ||
145 | -4v42_1_BB_5-121 | ||
146 | -Could not find nucleotides of chain BB in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
147 | - | ||
148 | 4v42_1_BA_1-2914 | 160 | 4v42_1_BA_1-2914 |
149 | Could not find nucleotides of chain BA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 161 | Could not find nucleotides of chain BA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
150 | 162 | ||
151 | 4v42_1_BA_151-2903 | 163 | 4v42_1_BA_151-2903 |
152 | Could not find nucleotides of chain BA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 164 | Could not find nucleotides of chain BA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
153 | 165 | ||
166 | +4v48_1_BA_1-91 | ||
167 | +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_1-91. | ||
168 | + | ||
169 | +4v48_1_BA_6-1541 | ||
170 | +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_6-1541. | ||
171 | + | ||
172 | +4v48_1_BA_1-1543 | ||
173 | +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_1-1543. | ||
174 | + | ||
175 | +4v48_1_BA_6-1538 | ||
176 | +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_6-1538. | ||
177 | + | ||
178 | +4v47_1_BA_1-91 | ||
179 | +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_1-91. | ||
180 | + | ||
181 | +4v47_1_BA_6-1540 | ||
182 | +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_6-1540. | ||
183 | + | ||
184 | +4v47_1_BA_1-1542 | ||
185 | +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_1-1542. | ||
186 | + | ||
187 | +4v47_1_BA_6-1537 | ||
188 | +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_6-1537. | ||
189 | + | ||
190 | +2rdo_1_B_1-2903 | ||
191 | +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_1-2903. | ||
192 | + | ||
193 | +2rdo_1_B_6-1460 | ||
194 | +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_6-1460. | ||
195 | + | ||
196 | +2rdo_1_B_1-1528 | ||
197 | +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_1-1528. | ||
198 | + | ||
199 | +2rdo_1_B_6-1457 | ||
200 | +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_6-1457. | ||
201 | + | ||
202 | +2rdo_1_B_160-2893 | ||
203 | +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_160-2893. | ||
204 | + | ||
205 | +2rdo_1_B_1-2904 | ||
206 | +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_1-2904. | ||
207 | + | ||
208 | +2rdo_1_B_6-1522 | ||
209 | +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_6-1522. | ||
210 | + | ||
211 | +4v48_1_A0_1-2903 | ||
212 | +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_1-2903. | ||
213 | + | ||
214 | +4v48_1_A0_6-1460 | ||
215 | +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_6-1460. | ||
216 | + | ||
217 | +4v48_1_A0_1-1528 | ||
218 | +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_1-1528. | ||
219 | + | ||
220 | +4v48_1_A0_6-1457 | ||
221 | +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_6-1457. | ||
222 | + | ||
223 | +4v48_1_A0_160-2893 | ||
224 | +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_160-2893. | ||
225 | + | ||
226 | +4v48_1_A0_1-2904 | ||
227 | +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_1-2904. | ||
228 | + | ||
229 | +4v48_1_A0_6-1522 | ||
230 | +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_6-1522. | ||
231 | + | ||
232 | +4v47_1_A0_1-2903 | ||
233 | +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_1-2903. | ||
234 | + | ||
235 | +4v47_1_A0_6-1460 | ||
236 | +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_6-1460. | ||
237 | + | ||
238 | +4v47_1_A0_1-1528 | ||
239 | +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_1-1528. | ||
240 | + | ||
241 | +4v47_1_A0_6-1457 | ||
242 | +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_6-1457. | ||
243 | + | ||
244 | +4v47_1_A0_160-2893 | ||
245 | +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_160-2893. | ||
246 | + | ||
247 | +4v47_1_A0_1-2904 | ||
248 | +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_1-2904. | ||
249 | + | ||
250 | +4v47_1_A0_6-1522 | ||
251 | +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_6-1522. | ||
252 | + | ||
154 | 2ob7_1_A_10-319 | 253 | 2ob7_1_A_10-319 |
155 | DSSR warning 2ob7.json: no nucleotides found. Ignoring 2ob7_1_A_10-319. | 254 | DSSR warning 2ob7.json: no nucleotides found. Ignoring 2ob7_1_A_10-319. |
156 | 255 | ||
... | @@ -166,158 +265,119 @@ DSSR warning 1zc8.json: no nucleotides found. Ignoring 1zc8_1_Z_1-91. | ... | @@ -166,158 +265,119 @@ DSSR warning 1zc8.json: no nucleotides found. Ignoring 1zc8_1_Z_1-91. |
166 | 2ob7_1_D_1-130 | 265 | 2ob7_1_D_1-130 |
167 | DSSR warning 2ob7.json: no nucleotides found. Ignoring 2ob7_1_D_1-130. | 266 | DSSR warning 2ob7.json: no nucleotides found. Ignoring 2ob7_1_D_1-130. |
168 | 267 | ||
169 | -1r2x_1_C_1-58 | ||
170 | -DSSR warning 1r2x.json: no nucleotides found. Ignoring 1r2x_1_C_1-58. | ||
171 | - | ||
172 | -1r2w_1_C_1-58 | ||
173 | -DSSR warning 1r2w.json: no nucleotides found. Ignoring 1r2w_1_C_1-58. | ||
174 | - | ||
175 | -1eg0_1_L_1-56 | ||
176 | -DSSR warning 1eg0.json: no nucleotides found. Ignoring 1eg0_1_L_1-56. | ||
177 | - | ||
178 | -1eg0_1_L_1-57 | ||
179 | -DSSR warning 1eg0.json: no nucleotides found. Ignoring 1eg0_1_L_1-57. | ||
180 | - | ||
181 | 6rxu_1_C2_588-2386 | 268 | 6rxu_1_C2_588-2386 |
182 | Could not find nucleotides of chain C2 in annotation 6rxu.json. Either there is a problem with 6rxu mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 269 | Could not find nucleotides of chain C2 in annotation 6rxu.json. Either there is a problem with 6rxu mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
183 | 270 | ||
184 | -6rxu_1_C2_588-2383 | 271 | +6rxu_1_C2_583-2388 |
185 | Could not find nucleotides of chain C2 in annotation 6rxu.json. Either there is a problem with 6rxu mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 272 | Could not find nucleotides of chain C2 in annotation 6rxu.json. Either there is a problem with 6rxu mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
186 | 273 | ||
187 | -6rxu_1_C2_583-2388 | 274 | +6rxu_1_C2_588-2383 |
188 | Could not find nucleotides of chain C2 in annotation 6rxu.json. Either there is a problem with 6rxu mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 275 | Could not find nucleotides of chain C2 in annotation 6rxu.json. Either there is a problem with 6rxu mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
189 | 276 | ||
190 | 5oql_1_2_588-2386 | 277 | 5oql_1_2_588-2386 |
191 | Could not find nucleotides of chain 2 in annotation 5oql.json. Either there is a problem with 5oql mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 278 | Could not find nucleotides of chain 2 in annotation 5oql.json. Either there is a problem with 5oql mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
192 | 279 | ||
193 | -5oql_1_2_588-2383 | 280 | +5oql_1_2_583-2388 |
194 | Could not find nucleotides of chain 2 in annotation 5oql.json. Either there is a problem with 5oql mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 281 | Could not find nucleotides of chain 2 in annotation 5oql.json. Either there is a problem with 5oql mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
195 | 282 | ||
196 | -5oql_1_2_583-2388 | 283 | +5oql_1_2_588-2383 |
197 | Could not find nucleotides of chain 2 in annotation 5oql.json. Either there is a problem with 5oql mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 284 | Could not find nucleotides of chain 2 in annotation 5oql.json. Either there is a problem with 5oql mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
198 | 285 | ||
199 | 6rxv_1_C2_588-2386 | 286 | 6rxv_1_C2_588-2386 |
200 | Could not find nucleotides of chain C2 in annotation 6rxv.json. Either there is a problem with 6rxv mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 287 | Could not find nucleotides of chain C2 in annotation 6rxv.json. Either there is a problem with 6rxv mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
201 | 288 | ||
202 | -6rxv_1_C2_588-2383 | 289 | +6rxv_1_C2_583-2388 |
203 | Could not find nucleotides of chain C2 in annotation 6rxv.json. Either there is a problem with 6rxv mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 290 | Could not find nucleotides of chain C2 in annotation 6rxv.json. Either there is a problem with 6rxv mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
204 | 291 | ||
205 | -6rxv_1_C2_583-2388 | 292 | +6rxv_1_C2_588-2383 |
206 | Could not find nucleotides of chain C2 in annotation 6rxv.json. Either there is a problem with 6rxv mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 293 | Could not find nucleotides of chain C2 in annotation 6rxv.json. Either there is a problem with 6rxv mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
207 | 294 | ||
208 | 6rxz_1_C2_588-2386 | 295 | 6rxz_1_C2_588-2386 |
209 | Could not find nucleotides of chain C2 in annotation 6rxz.json. Either there is a problem with 6rxz mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 296 | Could not find nucleotides of chain C2 in annotation 6rxz.json. Either there is a problem with 6rxz mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
210 | 297 | ||
211 | -6rxz_1_C2_588-2383 | 298 | +6rxz_1_C2_583-2388 |
212 | Could not find nucleotides of chain C2 in annotation 6rxz.json. Either there is a problem with 6rxz mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 299 | Could not find nucleotides of chain C2 in annotation 6rxz.json. Either there is a problem with 6rxz mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
213 | 300 | ||
214 | -6rxz_1_C2_583-2388 | 301 | +6rxz_1_C2_588-2383 |
215 | Could not find nucleotides of chain C2 in annotation 6rxz.json. Either there is a problem with 6rxz mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 302 | Could not find nucleotides of chain C2 in annotation 6rxz.json. Either there is a problem with 6rxz mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
216 | 303 | ||
217 | 6rxy_1_C2_588-2386 | 304 | 6rxy_1_C2_588-2386 |
218 | Could not find nucleotides of chain C2 in annotation 6rxy.json. Either there is a problem with 6rxy mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 305 | Could not find nucleotides of chain C2 in annotation 6rxy.json. Either there is a problem with 6rxy mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
219 | 306 | ||
220 | -6rxy_1_C2_588-2383 | 307 | +6rxy_1_C2_583-2388 |
221 | Could not find nucleotides of chain C2 in annotation 6rxy.json. Either there is a problem with 6rxy mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 308 | Could not find nucleotides of chain C2 in annotation 6rxy.json. Either there is a problem with 6rxy mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
222 | 309 | ||
223 | -6rxy_1_C2_583-2388 | 310 | +6rxy_1_C2_588-2383 |
224 | Could not find nucleotides of chain C2 in annotation 6rxy.json. Either there is a problem with 6rxy mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 311 | Could not find nucleotides of chain C2 in annotation 6rxy.json. Either there is a problem with 6rxy mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
225 | 312 | ||
226 | 6rxt_1_C2_588-2386 | 313 | 6rxt_1_C2_588-2386 |
227 | Could not find nucleotides of chain C2 in annotation 6rxt.json. Either there is a problem with 6rxt mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 314 | Could not find nucleotides of chain C2 in annotation 6rxt.json. Either there is a problem with 6rxt mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
228 | 315 | ||
229 | -6rxt_1_C2_588-2383 | ||
230 | -Could not find nucleotides of chain C2 in annotation 6rxt.json. Either there is a problem with 6rxt mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
231 | - | ||
232 | 6rxt_1_C2_583-2388 | 316 | 6rxt_1_C2_583-2388 |
233 | Could not find nucleotides of chain C2 in annotation 6rxt.json. Either there is a problem with 6rxt mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 317 | Could not find nucleotides of chain C2 in annotation 6rxt.json. Either there is a problem with 6rxt mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
234 | 318 | ||
235 | -4v48_1_BA_1-91 | 319 | +6rxt_1_C2_588-2383 |
236 | -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_1-91. | 320 | +Could not find nucleotides of chain C2 in annotation 6rxt.json. Either there is a problem with 6rxt mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
237 | - | ||
238 | -4v48_1_BA_6-1541 | ||
239 | -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_6-1541. | ||
240 | - | ||
241 | -4v48_1_BA_6-1538 | ||
242 | -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_6-1538. | ||
243 | - | ||
244 | -4v48_1_BA_1-1543 | ||
245 | -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_1-1543. | ||
246 | - | ||
247 | -4v47_1_BA_1-91 | ||
248 | -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_1-91. | ||
249 | - | ||
250 | -4v47_1_BA_6-1540 | ||
251 | -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_6-1540. | ||
252 | - | ||
253 | -4v47_1_BA_6-1537 | ||
254 | -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_6-1537. | ||
255 | - | ||
256 | -4v47_1_BA_1-1542 | ||
257 | -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_1-1542. | ||
258 | - | ||
259 | -2rdo_1_B_6-1460 | ||
260 | -DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_6-1460. | ||
261 | 321 | ||
262 | -2rdo_1_B_6-1522 | 322 | +1r2x_1_C_1-58 |
263 | -DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_6-1522. | 323 | +DSSR warning 1r2x.json: no nucleotides found. Ignoring 1r2x_1_C_1-58. |
264 | 324 | ||
265 | -2rdo_1_B_1-2903 | 325 | +1r2w_1_C_1-58 |
266 | -DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_1-2903. | 326 | +DSSR warning 1r2w.json: no nucleotides found. Ignoring 1r2w_1_C_1-58. |
267 | 327 | ||
268 | -2rdo_1_B_6-1457 | 328 | +1eg0_1_L_1-57 |
269 | -DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_6-1457. | 329 | +DSSR warning 1eg0.json: no nucleotides found. Ignoring 1eg0_1_L_1-57. |
270 | 330 | ||
271 | -2rdo_1_B_1-2904 | 331 | +1eg0_1_L_1-56 |
272 | -DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_1-2904. | 332 | +DSSR warning 1eg0.json: no nucleotides found. Ignoring 1eg0_1_L_1-56. |
273 | 333 | ||
274 | -2rdo_1_B_1-1528 | 334 | +1jgq_1_A_7-1518 |
275 | -DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_1-1528. | 335 | +Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
276 | 336 | ||
277 | -2rdo_1_B_160-2893 | 337 | +1jgq_1_A_20-55 |
278 | -DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_160-2893. | 338 | +Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
279 | 339 | ||
280 | -4v48_1_A0_6-1460 | 340 | +1jgq_1_A_2-1520 |
281 | -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_6-1460. | 341 | +Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
282 | 342 | ||
283 | -4v48_1_A0_6-1522 | 343 | +1jgq_1_A_7-1515 |
284 | -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_6-1522. | 344 | +Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
285 | 345 | ||
286 | -4v48_1_A0_1-2903 | 346 | +4v42_1_AA_7-1518 |
287 | -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_1-2903. | 347 | +Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
288 | 348 | ||
289 | -4v48_1_A0_6-1457 | 349 | +4v42_1_AA_20-55 |
290 | -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_6-1457. | 350 | +Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
291 | 351 | ||
292 | -4v48_1_A0_1-2904 | 352 | +4v42_1_AA_2-1520 |
293 | -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_1-2904. | 353 | +Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
294 | 354 | ||
295 | -4v48_1_A0_1-1528 | 355 | +4v42_1_AA_7-1515 |
296 | -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_1-1528. | 356 | +Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
297 | 357 | ||
298 | -4v48_1_A0_160-2893 | 358 | +1jgo_1_A_7-1518 |
299 | -DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_160-2893. | 359 | +Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
300 | 360 | ||
301 | -4v47_1_A0_6-1460 | 361 | +1jgo_1_A_20-55 |
302 | -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_6-1460. | 362 | +Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
303 | 363 | ||
304 | -4v47_1_A0_6-1522 | 364 | +1jgo_1_A_2-1520 |
305 | -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_6-1522. | 365 | +Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
306 | 366 | ||
307 | -4v47_1_A0_1-2903 | 367 | +1jgo_1_A_7-1515 |
308 | -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_1-2903. | 368 | +Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
309 | 369 | ||
310 | -4v47_1_A0_6-1457 | 370 | +1jgp_1_A_7-1518 |
311 | -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_6-1457. | 371 | +Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
312 | 372 | ||
313 | -4v47_1_A0_1-2904 | 373 | +1jgp_1_A_20-55 |
314 | -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_1-2904. | 374 | +Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
315 | 375 | ||
316 | -4v47_1_A0_1-1528 | 376 | +1jgp_1_A_2-1520 |
317 | -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_1-1528. | 377 | +Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
318 | 378 | ||
319 | -4v47_1_A0_160-2893 | 379 | +1jgp_1_A_7-1515 |
320 | -DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_160-2893. | 380 | +Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry. |
321 | 381 | ||
322 | 1zc8_1_A_1-59 | 382 | 1zc8_1_A_1-59 |
323 | DSSR warning 1zc8.json: no nucleotides found. Ignoring 1zc8_1_A_1-59. | 383 | DSSR warning 1zc8.json: no nucleotides found. Ignoring 1zc8_1_A_1-59. |
... | @@ -343,54 +403,6 @@ DSSR warning 1emi.json: no nucleotides found. Ignoring 1emi_1_B_1-108. | ... | @@ -343,54 +403,6 @@ DSSR warning 1emi.json: no nucleotides found. Ignoring 1emi_1_B_1-108. |
343 | 3iy9_1_A_498-1027 | 403 | 3iy9_1_A_498-1027 |
344 | DSSR warning 3iy9.json: no nucleotides found. Ignoring 3iy9_1_A_498-1027. | 404 | DSSR warning 3iy9.json: no nucleotides found. Ignoring 3iy9_1_A_498-1027. |
345 | 405 | ||
346 | -1jgq_1_A_20-55 | ||
347 | -Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
348 | - | ||
349 | -1jgq_1_A_7-1518 | ||
350 | -Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
351 | - | ||
352 | -1jgq_1_A_7-1515 | ||
353 | -Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
354 | - | ||
355 | -1jgq_1_A_2-1520 | ||
356 | -Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
357 | - | ||
358 | -4v42_1_AA_20-55 | ||
359 | -Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
360 | - | ||
361 | -4v42_1_AA_7-1518 | ||
362 | -Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
363 | - | ||
364 | -4v42_1_AA_7-1515 | ||
365 | -Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
366 | - | ||
367 | -4v42_1_AA_2-1520 | ||
368 | -Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
369 | - | ||
370 | -1jgo_1_A_20-55 | ||
371 | -Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
372 | - | ||
373 | -1jgo_1_A_7-1518 | ||
374 | -Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
375 | - | ||
376 | -1jgo_1_A_7-1515 | ||
377 | -Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
378 | - | ||
379 | -1jgo_1_A_2-1520 | ||
380 | -Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
381 | - | ||
382 | -1jgp_1_A_20-55 | ||
383 | -Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
384 | - | ||
385 | -1jgp_1_A_7-1518 | ||
386 | -Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
387 | - | ||
388 | -1jgp_1_A_7-1515 | ||
389 | -Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
390 | - | ||
391 | -1jgp_1_A_2-1520 | ||
392 | -Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
393 | - | ||
394 | 3ep2_1_B_1-50 | 406 | 3ep2_1_B_1-50 |
395 | DSSR warning 3ep2.json: no nucleotides found. Ignoring 3ep2_1_B_1-50. | 407 | DSSR warning 3ep2.json: no nucleotides found. Ignoring 3ep2_1_B_1-50. |
396 | 408 | ||
... | @@ -421,35 +433,32 @@ DSSR warning 3cw1.json: no nucleotides found. Ignoring 3cw1_1_v_1-138. | ... | @@ -421,35 +433,32 @@ DSSR warning 3cw1.json: no nucleotides found. Ignoring 3cw1_1_v_1-138. |
421 | 2iy3_1_B_9-105 | 433 | 2iy3_1_B_9-105 |
422 | DSSR warning 2iy3.json: no nucleotides found. Ignoring 2iy3_1_B_9-105. | 434 | DSSR warning 2iy3.json: no nucleotides found. Ignoring 2iy3_1_B_9-105. |
423 | 435 | ||
424 | -3jcr_1_N_1-106 | ||
425 | -DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_N_1-106. | ||
426 | - | ||
427 | 3jcr_1_N_1-188 | 436 | 3jcr_1_N_1-188 |
428 | DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_N_1-188. | 437 | DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_N_1-188. |
429 | 438 | ||
439 | +3jcr_1_N_1-106 | ||
440 | +DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_N_1-106. | ||
441 | + | ||
430 | 2vaz_1_A_64-177 | 442 | 2vaz_1_A_64-177 |
431 | DSSR warning 2vaz.json: no nucleotides found. Ignoring 2vaz_1_A_64-177. | 443 | DSSR warning 2vaz.json: no nucleotides found. Ignoring 2vaz_1_A_64-177. |
432 | 444 | ||
433 | -2ftc_1_R_81-1466 | ||
434 | -DSSR warning 2ftc.json: no nucleotides found. Ignoring 2ftc_1_R_81-1466. | ||
435 | - | ||
436 | 2ftc_1_R_1-1568 | 445 | 2ftc_1_R_1-1568 |
437 | DSSR warning 2ftc.json: no nucleotides found. Ignoring 2ftc_1_R_1-1568. | 446 | DSSR warning 2ftc.json: no nucleotides found. Ignoring 2ftc_1_R_1-1568. |
438 | 447 | ||
439 | 2ftc_1_R_792-1568 | 448 | 2ftc_1_R_792-1568 |
440 | DSSR warning 2ftc.json: no nucleotides found. Ignoring 2ftc_1_R_792-1568. | 449 | DSSR warning 2ftc.json: no nucleotides found. Ignoring 2ftc_1_R_792-1568. |
441 | 450 | ||
451 | +2ftc_1_R_81-1466 | ||
452 | +DSSR warning 2ftc.json: no nucleotides found. Ignoring 2ftc_1_R_81-1466. | ||
453 | + | ||
442 | 3jcr_1_M_1-141 | 454 | 3jcr_1_M_1-141 |
443 | DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_M_1-141. | 455 | DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_M_1-141. |
444 | 456 | ||
445 | -3jcr_1_M_1-107 | ||
446 | -DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_M_1-107. | ||
447 | - | ||
448 | 3jcr_1_M_1-188 | 457 | 3jcr_1_M_1-188 |
449 | DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_M_1-188. | 458 | DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_M_1-188. |
450 | 459 | ||
451 | -4v5z_1_B0_1-2840 | 460 | +3jcr_1_M_1-107 |
452 | -DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2840. | 461 | +DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_M_1-107. |
453 | 462 | ||
454 | 4v5z_1_B0_1-2899 | 463 | 4v5z_1_B0_1-2899 |
455 | DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2899. | 464 | DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2899. |
... | @@ -457,6 +466,9 @@ DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2899. | ... | @@ -457,6 +466,9 @@ DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2899. |
457 | 4v5z_1_B0_1-2902 | 466 | 4v5z_1_B0_1-2902 |
458 | DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2902. | 467 | DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2902. |
459 | 468 | ||
469 | +4v5z_1_B0_1-2840 | ||
470 | +DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2840. | ||
471 | + | ||
460 | 5g2x_1_A_595-692 | 472 | 5g2x_1_A_595-692 |
461 | Sequence is too short. (< 5 resolved nts) | 473 | Sequence is too short. (< 5 resolved nts) |
462 | 474 | ||
... | @@ -481,21 +493,9 @@ DSSR warning 4adx.json: no nucleotides found. Ignoring 4adx_1_0_132-2915. | ... | @@ -481,21 +493,9 @@ DSSR warning 4adx.json: no nucleotides found. Ignoring 4adx_1_0_132-2915. |
481 | 3eq4_1_Y_1-69 | 493 | 3eq4_1_Y_1-69 |
482 | DSSR warning 3eq4.json: no nucleotides found. Ignoring 3eq4_1_Y_1-69. | 494 | DSSR warning 3eq4.json: no nucleotides found. Ignoring 3eq4_1_Y_1-69. |
483 | 495 | ||
484 | -4v5z_1_AA_1-1562 | ||
485 | -DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_AA_1-1562. | ||
486 | - | ||
487 | 4v5z_1_AA_1-1563 | 496 | 4v5z_1_AA_1-1563 |
488 | DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_AA_1-1563. | 497 | DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_AA_1-1563. |
489 | 498 | ||
490 | -6lqm_1_8_1267-4755 | 499 | +4v5z_1_AA_1-1562 |
491 | -Could not find nucleotides of chain 8 in annotation 6lqm.json. Either there is a problem with 6lqm mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | 500 | +DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_AA_1-1562. |
492 | - | ||
493 | -6lu8_1_8_1267-4755 | ||
494 | -Could not find nucleotides of chain 8 in annotation 6lu8.json. Either there is a problem with 6lu8 mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
495 | - | ||
496 | -6lsr_1_8_1267-4755 | ||
497 | -Could not find nucleotides of chain 8 in annotation 6lsr.json. Either there is a problem with 6lsr mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
498 | - | ||
499 | -6lss_1_8_1267-4755 | ||
500 | -Could not find nucleotides of chain 8 in annotation 6lss.json. Either there is a problem with 6lss mmCIF download, or the bases are not resolved in the structure. Delete it and retry. | ||
501 | 501 | ... | ... |
... | @@ -3,13 +3,8 @@ import subprocess, os, sys | ... | @@ -3,13 +3,8 @@ import subprocess, os, sys |
3 | 3 | ||
4 | # Put a list of problematic chains here, they will be properly deleted and recomputed | 4 | # Put a list of problematic chains here, they will be properly deleted and recomputed |
5 | problems = [ | 5 | problems = [ |
6 | -"4v7f_1_1_4-3396", | 6 | +"4v9n_1_DA_1-2879", |
7 | -"4v7f_1_1_1-3167", | 7 | +"4v9n_1_DA_148-2875" |
8 | -"4v7f_1_1_1-3255", | ||
9 | -"6g90_1_1_1-407", | ||
10 | -"3q3z_1_A_1-74", | ||
11 | -"3q3z_1_V_1-74", | ||
12 | -"4v7f_1_3_1-121" | ||
13 | ] | 8 | ] |
14 | 9 | ||
15 | path_to_3D_data = sys.argv[1] | 10 | path_to_3D_data = sys.argv[1] | ... | ... |
... | @@ -613,7 +613,7 @@ if __name__ == "__main__": | ... | @@ -613,7 +613,7 @@ if __name__ == "__main__": |
613 | 613 | ||
614 | p = Pool(initializer=init_worker, initargs=(tqdm.get_lock(),), processes=nworkers) | 614 | p = Pool(initializer=init_worker, initargs=(tqdm.get_lock(),), processes=nworkers) |
615 | pbar = tqdm(total=len(joblist), desc="Stat jobs", position=0, leave=True) | 615 | pbar = tqdm(total=len(joblist), desc="Stat jobs", position=0, leave=True) |
616 | -sqlite3 | 616 | + |
617 | try: | 617 | try: |
618 | for j in joblist: | 618 | for j in joblist: |
619 | p.apply_async(j.func_, args=j.args_, callback=log_to_pbar(pbar)) | 619 | p.apply_async(j.func_, args=j.args_, callback=log_to_pbar(pbar)) | ... | ... |
-
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