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RNANet
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Authored by
Louis BECQUEY
2020-09-10 09:07:20 +0200
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Plain Diff
Commit
72e8fc2f7afc78f81e1b99923f4af0db4f86ca7b
72e8fc2f
1 parent
97926e0b
typo in statistics.py + recomputation
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4 changed files
with
73 additions
and
78 deletions
known_issues.txt
known_issues_reasons.txt
recompute_some_chains.py
statistics.py
known_issues.txt
View file @
72e8fc2
1ml5_1_a_1-2914
1ml5_1_a_151-2903
1ml5_1_A_7-1518
1ml5_1_A_7-1515
1ml5_1_A_2-1520
1ml5_1_A_7-1518
1ml5_1_b_5-121
2rdo_1_A_3-118
4v48_1_A9_3-118
4v47_1_A9_3-118
1vy7_1_AY_1-73
1vy7_1_CY_1-73
4w2h_1_CY_1-73
6zmi_1_L8_1267-4755
6zm7_1_L8_1267-4755
6y6x_1_L8_1267-4755
...
...
@@ -23,7 +20,11 @@
6ole_1_D_1267-4755
6om0_1_D_1267-4755
6y2l_1_L8_1267-4755
6lqm_1_8_1267-4755
6y0g_1_L8_1267-4755
6lu8_1_8_1267-4755
6lsr_1_8_1267-4755
6lss_1_8_1267-4755
6oli_1_D_1267-4755
6olg_1_A3_1267-4755
6y57_1_L8_1267-4755
...
...
@@ -38,97 +39,100 @@
5lks_1_L8_1267-4755
6ip6_1_1C_1267-4755
4v6x_1_A8_1267-4755
1vy7_1_AY_1-73
1vy7_1_CY_1-73
4w2h_1_CY_1-73
2z9q_1_A_1-72
4v42_1_BB_5-121
1ls2_1_B_1-73
3ep2_1_Y_1-72
3eq3_1_Y_1-72
4v48_1_A6_1-73
1eg0_1_O_1-73
1gsg_1_T_1-72
3jcr_1_H_1-115
1eg0_1_O_1-73
4v42_1_BB_5-121
4v42_1_BA_1-2914
4v42_1_BA_151-2903
4v48_1_BA_1-91
4v48_1_BA_6-1541
4v48_1_BA_1-1543
4v48_1_BA_6-1538
4v47_1_BA_1-91
4v47_1_BA_6-1540
4v47_1_BA_1-1542
4v47_1_BA_6-1537
2rdo_1_B_1-2903
2rdo_1_B_6-1460
2rdo_1_B_1-1528
2rdo_1_B_6-1457
2rdo_1_B_160-2893
2rdo_1_B_1-2904
2rdo_1_B_6-1522
4v48_1_A0_1-2903
4v48_1_A0_6-1460
4v48_1_A0_1-1528
4v48_1_A0_6-1457
4v48_1_A0_160-2893
4v48_1_A0_1-2904
4v48_1_A0_6-1522
4v47_1_A0_1-2903
4v47_1_A0_6-1460
4v47_1_A0_1-1528
4v47_1_A0_6-1457
4v47_1_A0_160-2893
4v47_1_A0_1-2904
4v47_1_A0_6-1522
2ob7_1_A_10-319
1x1l_1_A_1-130
1zc8_1_Z_1-130
1zc8_1_Z_1-91
2ob7_1_D_1-130
1r2x_1_C_1-58
1r2w_1_C_1-58
1eg0_1_L_1-56
1eg0_1_L_1-57
6rxu_1_C2_588-2386
6rxu_1_C2_588-2383
6rxu_1_C2_583-2388
6rxu_1_C2_588-2383
5oql_1_2_588-2386
5oql_1_2_588-2383
5oql_1_2_583-2388
5oql_1_2_588-2383
6rxv_1_C2_588-2386
6rxv_1_C2_588-2383
6rxv_1_C2_583-2388
6rxv_1_C2_588-2383
6rxz_1_C2_588-2386
6rxz_1_C2_588-2383
6rxz_1_C2_583-2388
6rxz_1_C2_588-2383
6rxy_1_C2_588-2386
6rxy_1_C2_588-2383
6rxy_1_C2_583-2388
6rxy_1_C2_588-2383
6rxt_1_C2_588-2386
6rxt_1_C2_588-2383
6rxt_1_C2_583-2388
4v48_1_BA_1-91
4v48_1_BA_6-1541
4v48_1_BA_6-1538
4v48_1_BA_1-1543
4v47_1_BA_1-91
4v47_1_BA_6-1540
4v47_1_BA_6-1537
4v47_1_BA_1-1542
2rdo_1_B_6-1460
2rdo_1_B_6-1522
2rdo_1_B_1-2903
2rdo_1_B_6-1457
2rdo_1_B_1-2904
2rdo_1_B_1-1528
2rdo_1_B_160-2893
4v48_1_A0_6-1460
4v48_1_A0_6-1522
4v48_1_A0_1-2903
4v48_1_A0_6-1457
4v48_1_A0_1-2904
4v48_1_A0_1-1528
4v48_1_A0_160-2893
4v47_1_A0_6-1460
4v47_1_A0_6-1522
4v47_1_A0_1-2903
4v47_1_A0_6-1457
4v47_1_A0_1-2904
4v47_1_A0_1-1528
4v47_1_A0_160-2893
1zc8_1_A_1-59
1mvr_1_D_1-59
4c9d_1_D_29-1
4c9d_1_C_29-1
4adx_1_9_1-121
1zn1_1_B_1-59
1emi_1_B_1-108
3iy9_1_A_498-1027
1jgq_1_A_20-55
6rxt_1_C2_588-2383
1r2x_1_C_1-58
1r2w_1_C_1-58
1eg0_1_L_1-57
1eg0_1_L_1-56
1jgq_1_A_7-1518
1jgq_1_A_
7-151
5
1jgq_1_A_
20-5
5
1jgq_1_A_2-1520
4v42_1_AA_20-5
5
1jgq_1_A_7-151
5
4v42_1_AA_7-1518
4v42_1_AA_
7-151
5
4v42_1_AA_
20-5
5
4v42_1_AA_2-1520
1jgo_1_A_20-5
5
4v42_1_AA_7-151
5
1jgo_1_A_7-1518
1jgo_1_A_
7-151
5
1jgo_1_A_
20-5
5
1jgo_1_A_2-1520
1jg
p_1_A_20-5
5
1jg
o_1_A_7-151
5
1jgp_1_A_7-1518
1jgp_1_A_
7-151
5
1jgp_1_A_
20-5
5
1jgp_1_A_2-1520
1jgp_1_A_7-1515
1zc8_1_A_1-59
1mvr_1_D_1-59
4c9d_1_D_29-1
4c9d_1_C_29-1
4adx_1_9_1-121
1zn1_1_B_1-59
1emi_1_B_1-108
3iy9_1_A_498-1027
3ep2_1_B_1-50
3eq3_1_B_1-50
3eq4_1_B_1-50
...
...
@@ -139,18 +143,18 @@
3cw1_1_V_1-138
3cw1_1_v_1-138
2iy3_1_B_9-105
3jcr_1_N_1-106
3jcr_1_N_1-188
3jcr_1_N_1-106
2vaz_1_A_64-177
2ftc_1_R_81-1466
2ftc_1_R_1-1568
2ftc_1_R_792-1568
2ftc_1_R_81-1466
3jcr_1_M_1-141
3jcr_1_M_1-107
3jcr_1_M_1-188
4v5z_1_B0_1-2840
3jcr_1_M_1-107
4v5z_1_B0_1-2899
4v5z_1_B0_1-2902
4v5z_1_B0_1-2840
5g2x_1_A_595-692
3iy8_1_A_1-540
4v5z_1_BY_2-113
...
...
@@ -159,9 +163,5 @@
4adx_1_0_1-2923
4adx_1_0_132-2915
3eq4_1_Y_1-69
4v5z_1_AA_1-1562
4v5z_1_AA_1-1563
6lqm_1_8_1267-4755
6lu8_1_8_1267-4755
6lsr_1_8_1267-4755
6lss_1_8_1267-4755
4v5z_1_AA_1-1562
...
...
known_issues_reasons.txt
View file @
72e8fc2
This diff is collapsed. Click to expand it.
recompute_some_chains.py
View file @
72e8fc2
...
...
@@ -3,13 +3,8 @@ import subprocess, os, sys
# Put a list of problematic chains here, they will be properly deleted and recomputed
problems
=
[
"4v7f_1_1_4-3396"
,
"4v7f_1_1_1-3167"
,
"4v7f_1_1_1-3255"
,
"6g90_1_1_1-407"
,
"3q3z_1_A_1-74"
,
"3q3z_1_V_1-74"
,
"4v7f_1_3_1-121"
"4v9n_1_DA_1-2879"
,
"4v9n_1_DA_148-2875"
]
path_to_3D_data
=
sys
.
argv
[
1
]
...
...
statistics.py
View file @
72e8fc2
...
...
@@ -613,7 +613,7 @@ if __name__ == "__main__":
p
=
Pool
(
initializer
=
init_worker
,
initargs
=
(
tqdm
.
get_lock
(),),
processes
=
nworkers
)
pbar
=
tqdm
(
total
=
len
(
joblist
),
desc
=
"Stat jobs"
,
position
=
0
,
leave
=
True
)
sqlite3
try
:
for
j
in
joblist
:
p
.
apply_async
(
j
.
func_
,
args
=
j
.
args_
,
callback
=
log_to_pbar
(
pbar
))
...
...
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