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Louis BECQUEY
/
RNANet
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Authored by
Aglaé TABOT
2021-06-16 15:21:23 +0200
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Commit
b40f13c52330539e3e933ce47a830c0b1633fca2
b40f13c5
1 parent
69915be7
little corrections
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1 changed file
with
5 additions
and
5 deletions
statistics.py
statistics.py
View file @
b40f13c
...
...
@@ -1745,7 +1745,7 @@ def conversion_angles(bdd):
elif
np
.
pi
<
nt
[
i
]
<=
2
*
np
.
pi
:
#if value of the angle between pi and 2pi, negative
angle
=
((
180
/
np
.
pi
)
*
nt
[
i
])
-
360
else
:
angle
=
nt
[
i
]
#
dans le cas ou certains angles seraient en degres -> supprimer?
angle
=
nt
[
i
]
#
some angles already in degrees
angles_deg
.
append
(
angle
)
angles_torsion
.
append
(
angles_deg
)
return
angles_torsion
...
...
@@ -2387,7 +2387,7 @@ def graph_angles_torsion():
epsilon
=
[]
zeta
=
[]
chi
=
[]
for
angles_deg
in
conversion_angles
(
"/home/atabot
/RNANet.db"
)
:
#chemin à modifier
for
angles_deg
in
conversion_angles
(
runDir
+
"/results
/RNANet.db"
)
:
#chemin à modifier
alpha
.
append
(
angles_deg
[
2
])
beta
.
append
(
angles_deg
[
3
])
gamma
.
append
(
angles_deg
[
4
])
...
...
@@ -3096,12 +3096,12 @@ if __name__ == "__main__":
joblist
.
append
(
Job
(
function
=
to_id_matrix
,
args
=
(
f
,)))
# updates the database
f_prec
=
os
.
listdir
(
path_to_3D_data
+
"rna_only"
)[
0
]
for
f
in
os
.
listdir
(
path_to_3D_data
+
"rna_only"
)
[:
100
]
:
for
f
in
os
.
listdir
(
path_to_3D_data
+
"rna_only"
):
joblist
.
append
(
Job
(
function
=
dist_atoms
,
args
=
(
f
,)))
if
DO_HIRE_RNA_MEASURES
:
f_prec
=
os
.
listdir
(
path_to_3D_data
+
"rna_only"
)[
0
]
for
f
in
os
.
listdir
(
path_to_3D_data
+
"rna_only"
)
[:
100
]
:
for
f
in
os
.
listdir
(
path_to_3D_data
+
"rna_only"
):
joblist
.
append
(
Job
(
function
=
dist_atoms_hire_RNA
,
args
=
(
f
,)))
joblist
.
append
(
Job
(
function
=
angles_torsion_hire_RNA
,
args
=
(
f
,)))
joblist
.
append
(
Job
(
function
=
angles_plans_hire_RNA
,
args
=
(
f
,)))
...
...
@@ -3109,7 +3109,7 @@ if __name__ == "__main__":
'''
Basepairs
'''
ld
=
os
.
listdir
(
path_to_3D_data
+
'datapoints'
)
[:
1000
]
ld
=
os
.
listdir
(
path_to_3D_data
+
'datapoints'
)
if
'4zdo_1_E'
in
ld
:
ld
.
remove
(
'4zdo_1_E'
)
#cas particuliers
if
'4zdp_1_E'
in
ld
:
...
...
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