Aglaé TABOT

little corrections

......@@ -1745,7 +1745,7 @@ def conversion_angles(bdd):
elif np.pi < nt[i] <= 2*np.pi : #if value of the angle between pi and 2pi, negative
angle=((180/np.pi)*nt[i])-360
else :
angle=nt[i] # dans le cas ou certains angles seraient en degres -> supprimer?
angle=nt[i] # some angles already in degrees
angles_deg.append(angle)
angles_torsion.append(angles_deg)
return angles_torsion
......@@ -2387,7 +2387,7 @@ def graph_angles_torsion():
epsilon=[]
zeta=[]
chi = []
for angles_deg in conversion_angles("/home/atabot/RNANet.db") : #chemin à modifier
for angles_deg in conversion_angles(runDir +"/results/RNANet.db") : #chemin à modifier
alpha.append(angles_deg[2])
beta.append(angles_deg[3])
gamma.append(angles_deg[4])
......@@ -3096,12 +3096,12 @@ if __name__ == "__main__":
joblist.append(Job(function=to_id_matrix, args=(f,))) # updates the database
f_prec=os.listdir(path_to_3D_data + "rna_only")[0]
for f in os.listdir(path_to_3D_data + "rna_only")[:100]:
for f in os.listdir(path_to_3D_data + "rna_only"):
joblist.append(Job(function=dist_atoms, args=(f,)))
if DO_HIRE_RNA_MEASURES:
f_prec=os.listdir(path_to_3D_data + "rna_only")[0]
for f in os.listdir(path_to_3D_data + "rna_only")[:100]:
for f in os.listdir(path_to_3D_data + "rna_only"):
joblist.append(Job(function=dist_atoms_hire_RNA, args=(f,)))
joblist.append(Job(function=angles_torsion_hire_RNA, args=(f,)))
joblist.append(Job(function=angles_plans_hire_RNA, args=(f,)))
......@@ -3109,7 +3109,7 @@ if __name__ == "__main__":
'''
Basepairs
'''
ld=os.listdir(path_to_3D_data +'datapoints')[:1000]
ld=os.listdir(path_to_3D_data +'datapoints')
if '4zdo_1_E' in ld :
ld.remove('4zdo_1_E')#cas particuliers
if '4zdp_1_E' in ld :
......