automation details

@@ -4,7 +4,7 @@ cd /home/lbecquey/Projects/RNANet;
 rm -f stdout.txt stderr.txt errors.txt;
 
 # Run RNANet
-time './RNAnet.py --3d-folder /home/lbequey/Data/RNA/3D/ --seq-folder /home/lbecquey/Data/RNA/sequences/ -s -r 20.0 --archive' > stdout.txt 2> stderr.txt;
+nohup bash -c 'time ./RNAnet.py --3d-folder /home/lbecquey/Data/RNA/3D/ --seq-folder /home/lbecquey/Data/RNA/sequences/ -s -r 20.0 --archive';
 
 # Compress
 rm -f results/RNANet.db.gz

@@ -10,6 +10,17 @@ for KILLPID in $PROCESS_LIST; do
   fi
 done
 
+PROCESS_TO_KILL="statistics.py"
+PROCESS_LIST=`ps ax | grep -Ei ${PROCESS_TO_KILL} | grep -Eiv '(grep|vi statistics.py)' | awk ' { print $1;}'`
+KILLED=
+for KILLPID in $PROCESS_LIST; do
+  if [ ! -z $KILLPID ];then
+    kill -9 $KILLPID
+    echo "Killed PID ${KILLPID}"
+    KILLED=yes
+  fi
+done
+
 if [ -z $KILLED ];then
     echo "Didn't kill anything"
 fi

+1ml5_1_a_1-2914
+1ml5_1_a_151-2903
+1ml5_1_A_7-1518
+1ml5_1_A_7-1515
+1ml5_1_A_2-1520
+1ml5_1_b_5-121
+2rdo_1_A_3-118
+4v48_1_A9_3-118
+4v47_1_A9_3-118
+1vy7_1_AY_1-73
+1vy7_1_CY_1-73
+4w2h_1_CY_1-73
+6zmi_1_L8_1267-4755
+6zm7_1_L8_1267-4755
+6y6x_1_L8_1267-4755
+6z6n_1_L8_1267-4755
+6qzp_1_L8_1267-4755
+6zme_1_L8_1267-4755
+6z6l_1_L8_1267-4755
+6ek0_1_L8_1267-4755
+6zmo_1_L8_1267-4755
+6z6m_1_L8_1267-4755
+6ole_1_D_1267-4755
+6om0_1_D_1267-4755
+6y2l_1_L8_1267-4755
+6y0g_1_L8_1267-4755
+6oli_1_D_1267-4755
+6olg_1_A3_1267-4755
+6y57_1_L8_1267-4755
+5t2c_1_C_1267-4755
+6om7_1_D_1267-4755
+4ug0_1_L8_1267-4755
+6olf_1_D_1267-4755
+6ip5_1_1C_1267-4755
+6ip8_1_1C_1267-4755
+6olz_1_A3_1267-4755
+5aj0_1_A3_1267-4755
+5lks_1_L8_1267-4755
+6ip6_1_1C_1267-4755
+4v6x_1_A8_1267-4755
+2z9q_1_A_1-72
+1ls2_1_B_1-73
+3ep2_1_Y_1-72
+3eq3_1_Y_1-72
+4v48_1_A6_1-73
+1gsg_1_T_1-72
+3jcr_1_H_1-115
+1eg0_1_O_1-73
+4v42_1_BB_5-121
+4v42_1_BA_1-2914
+4v42_1_BA_151-2903
+2ob7_1_A_10-319
+1x1l_1_A_1-130
+1zc8_1_Z_1-130
+1zc8_1_Z_1-91
+2ob7_1_D_1-130
+1r2x_1_C_1-58
+1r2w_1_C_1-58
+1eg0_1_L_1-56
+1eg0_1_L_1-57
+6rxu_1_C2_588-2386
+6rxu_1_C2_588-2383
+6rxu_1_C2_583-2388
+5oql_1_2_588-2386
+5oql_1_2_588-2383
+5oql_1_2_583-2388
+6rxv_1_C2_588-2386
+6rxv_1_C2_588-2383
+6rxv_1_C2_583-2388
+6rxz_1_C2_588-2386
+6rxz_1_C2_588-2383
+6rxz_1_C2_583-2388
+6rxy_1_C2_588-2386
+6rxy_1_C2_588-2383
+6rxy_1_C2_583-2388
+6rxt_1_C2_588-2386
+6rxt_1_C2_588-2383
+6rxt_1_C2_583-2388
+4v48_1_BA_1-91
+4v48_1_BA_6-1541
+4v48_1_BA_6-1538
+4v48_1_BA_1-1543
+4v47_1_BA_1-91
+4v47_1_BA_6-1540
+4v47_1_BA_6-1537
+4v47_1_BA_1-1542
+2rdo_1_B_6-1460
+2rdo_1_B_6-1522
+2rdo_1_B_1-2903
+2rdo_1_B_6-1457
+2rdo_1_B_1-2904
+2rdo_1_B_1-1528
+2rdo_1_B_160-2893
+4v48_1_A0_6-1460
+4v48_1_A0_6-1522
+4v48_1_A0_1-2903
+4v48_1_A0_6-1457
+4v48_1_A0_1-2904
+4v48_1_A0_1-1528
+4v48_1_A0_160-2893
+4v47_1_A0_6-1460
+4v47_1_A0_6-1522
+4v47_1_A0_1-2903
+4v47_1_A0_6-1457
+4v47_1_A0_1-2904
+4v47_1_A0_1-1528
+4v47_1_A0_160-2893
+1zc8_1_A_1-59
+1mvr_1_D_1-59
+4c9d_1_D_29-1
+4c9d_1_C_29-1
+4adx_1_9_1-121
+1zn1_1_B_1-59
+1emi_1_B_1-108
+3iy9_1_A_498-1027
+1jgq_1_A_20-55
+1jgq_1_A_7-1518
+1jgq_1_A_7-1515
+1jgq_1_A_2-1520
+4v42_1_AA_20-55
+4v42_1_AA_7-1518
+4v42_1_AA_7-1515
+4v42_1_AA_2-1520
+1jgo_1_A_20-55
+1jgo_1_A_7-1518
+1jgo_1_A_7-1515
+1jgo_1_A_2-1520
+1jgp_1_A_20-55
+1jgp_1_A_7-1518
+1jgp_1_A_7-1515
+1jgp_1_A_2-1520
+3ep2_1_B_1-50
+3eq3_1_B_1-50
+3eq4_1_B_1-50
+3pgw_1_R_1-164
+3pgw_1_N_1-164
+3cw1_1_x_1-138
+3cw1_1_w_1-138
+3cw1_1_V_1-138
+3cw1_1_v_1-138
+2iy3_1_B_9-105
+3jcr_1_N_1-106
+3jcr_1_N_1-188
+2vaz_1_A_64-177
+2ftc_1_R_81-1466
+2ftc_1_R_1-1568
+2ftc_1_R_792-1568
+3jcr_1_M_1-141
+3jcr_1_M_1-107
+3jcr_1_M_1-188
+4v5z_1_B0_1-2840
+4v5z_1_B0_1-2899
+4v5z_1_B0_1-2902
+5g2x_1_A_595-692
+3iy8_1_A_1-540
+4v5z_1_BY_2-113
+4v5z_1_BZ_1-70
+1mvr_1_B_1-96
+4adx_1_0_1-2923
+4adx_1_0_132-2915
+3eq4_1_Y_1-69
+4v5z_1_AA_1-1562
+4v5z_1_AA_1-1563