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Louis BECQUEY
/
RNANet
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Authored by
Louis BECQUEY
2021-01-31 13:05:44 +0100
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e70f9e6aa686b3623ee50aa4a76d808083ee861c
e70f9e6a
1 parent
550e1ac2
from-scratch now removes CIFs and annotations
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KnownIssues.md
RNAnet.py
KnownIssues.md
View file @
e70f9e6
...
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@@ -20,4 +20,5 @@
*
[
UPCOMING
]
Automated annotation of detected Recurrent Interaction Networks (RINs), see http://carnaval.lri.fr/ .
*
[
UPCOMING
]
Possibly, automated detection of HLs and ILs from the 3D Motif Atlas (BGSU). Maybe. Their own website already does the job.
*
A field estimating the quality of the sequence alignment in table family.
*
Possibly, more metrics about the alignments coming from Infernal.
\ No newline at end of file
*
Possibly, more metrics about the alignments coming from Infernal.
*
Move to SILVA LSU release 138
\ No newline at end of file
...
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RNAnet.py
View file @
e70f9e6
...
...
@@ -1072,8 +1072,8 @@ class Pipeline:
elif
opt
==
"--from-scratch"
:
warn
(
"Deleting previous database and recomputing from scratch."
)
subprocess
.
run
([
"rm"
,
"-rf"
,
# path_to_3D_data + "annotations", # DEBUG : keep the annotations !
# path_to_3D_data + "RNAcifs", # DEBUG : keep the cifs !
path_to_3D_data
+
"annotations"
,
path_to_3D_data
+
"RNAcifs"
,
path_to_3D_data
+
"rna_mapped_to_Rfam"
,
path_to_3D_data
+
"rnaonly"
,
path_to_seq_data
+
"realigned"
,
...
...
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