Louis BECQUEY / biorseo

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Louis BECQUEY
e80920f2 1 parent d10c4d18

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Showing 7 changed files with 25 additions and 5758 deletions
...@@ -24,6 +24,7 @@ log_of_the_run.sh ...@@ -24,6 +24,7 @@ log_of_the_run.sh
24 logBadDesc.txt 24 logBadDesc.txt
25 gurobi.log 25 gurobi.log
26 temp/* 26 temp/*
27 +test_on_RNAstrand.py
27 28
28 # data 29 # data
29 data/modules/BGSU/HL/3.2/diagnostic/* 30 data/modules/BGSU/HL/3.2/diagnostic/*
......
...@@ -36,8 +36,19 @@ $(OBJECTS): $(OBJDIR)/%.o : $(SRCDIR)/%.cpp $(INCLUDES) ...@@ -36,8 +36,19 @@ $(OBJECTS): $(OBJDIR)/%.o : $(SRCDIR)/%.cpp $(INCLUDES)
36 $(CC) -c $(CFLAGS) $(CXXFLAGS) $< -o $@ 36 $(CC) -c $(CFLAGS) $(CXXFLAGS) $< -o $@
37 @echo "\033[00;32mCompiled "$<".\033[00m" 37 @echo "\033[00;32mCompiled "$<".\033[00m"
38 38
39 +doc: mainpdf supppdf
40 +
41 +mainpdf: doc/main_bioinformatics.tex doc/references.bib doc/bioinfo.cls doc/natbib.bst
42 + cd doc; pdflatex -synctex=1 -interaction=nonstopmode -file-line-error main_bioinformatics
43 + cd doc; bibtex main_bioinformatics
44 + cd doc; pdflatex -synctex=1 -interaction=nonstopmode -file-line-error main_bioinformatics
45 + cd doc; pdflatex -synctex=1 -interaction=nonstopmode -file-line-error main_bioinformatics
46 +
47 +supppdf: doc/supplementary_material.tex
48 + cd doc; pdflatex -synctex=1 -interaction=nonstopmode -file-line-error supplementary_material
49 +
39 .PHONY: all 50 .PHONY: all
40 -all: $(BINDIR)/$(TARGET) 51 +all: $(BINDIR)/$(TARGET) doc
41 52
42 .PHONY: re 53 .PHONY: re
43 re: remove clean all 54 re: remove clean all
...@@ -45,9 +56,12 @@ re: remove clean all ...@@ -45,9 +56,12 @@ re: remove clean all
45 .PHONY: clean 56 .PHONY: clean
46 clean: 57 clean:
47 $(rm) $(OBJECTS) 58 $(rm) $(OBJECTS)
59 + $(rm) doc/supplementary_material.bbl doc/supplementary_material.blg doc/supplementary_material.synctex.gz doc/supplementary_material.log doc/supplementary_material.aux
60 + $(rm) doc/main_bioinformatics.bbl doc/main_bioinformatics.blg doc/main_bioinformatics.synctex.gz doc/main_bioinformatics.log doc/main_bioinformatics.aux doc/OUP_First_SBk_Bot_8401-eps-converted-to.pdf
48 @echo "\033[00;32mCleanup completed.\033[00m" 61 @echo "\033[00;32mCleanup completed.\033[00m"
49 62
50 .PHONY: remove 63 .PHONY: remove
51 -remove: clean 64 +remove:
52 @$(rm) $(BINDIR)/$(TARGET) 65 @$(rm) $(BINDIR)/$(TARGET)
53 - @echo "\033[00;32mExecutable removed!\033[00m" 66 + @$(rm) doc/main_bioinformatics.pdf doc/supplementary_material.pdf
67 + @echo "\033[00;32mExecutable and docs removed!\033[00m"
......
1 +>__'CRYSTAL_STRUCTURE_OF_A_TIGHT-BINDING_GLUTAMINE_TRNA_BOUND_TO_GLUTAMINE_AMINOACYL_TRNA_SYNTHETASE_'_(PDB_00376)
2 +GGGGUAUCGCCAAGCGGUAAGGCACCGGAUUCUGAUUCCGGAGGUCGAGGUUCGAAUCCUCGUACCCCAGCCA
3 +>__'GUANINE_RIBOSWITCH_U22C,_A52G_MUTANT_BOUND_TO_HYPOXANTHINE_'_(PDB_01023)
4 +GGACAUACAAUCGCGUGGAUAUGGCACGCAAGUUUCUGCCGGGCACCGUAAAUGUCCGACUAUGUCCa
5 +>__'SOLUTION_STRUCTURE_OF_THE_P2B-P3_PSEUDOKNOT_FROM_HUMAN_TELOMERASE_RNA_'_(PDB_00857)
6 +GGGCUGUUUUUCUCGCUGACUUUCAGCCCCAAACAAAAAAGUCAGCA
1 ->>__'BRANCHPOINT_HELIX_FROM_YEAST_AND_BINDING_SITE_FOR_PHAGE_GA/MS2_COAT_PROTEINS,_NMR,_12_STRUCTURES_'_(PDB_00002)
2 -GGCGUAAGGAUUACCUAUGCC
3 -(((((.(((....))))))))
4 ->>__'LOOP_D/LOOP_E_ARM_OF_E._COLI_5S_RRNA,_NMR,_9_STRUCTURES_'_(PDB_00004)
5 -GGCCGAUGGUAGUGUGGGGUCUCCCCAUGCGAGAGUAGGCC
6 -(((((((((((((((((((...)))))))))))))))))))
7 ->>__'NMR_STRUCTURE_OF_A_CLASSICAL_PSEUDOKNOT:_INTERPLAY_OF_SINGLE-AND_DOUBLE-STRANDED_RNA,_24_STRUCTURES_'_(PDB_00005)
8 -GGGAGCUCAACUCUCCCCCCCUUUUCCGAGGGUCAUCGGAACCA
9 -(((((.......)))))[[[...((((((]]]...))))))...
10 ->>__'SOLUTION_STRUCTURE_OF_A_SUBSTRATE_FOR_THE_ARCHAEAL_PRE-TRNA_SPLICING_ENDONUCLEASES:_THE_BULGE-HELIX-BULGE_MOTIF,_NMR,_12_STRUCTURES_'_(PDB_00006)
11 -GGGUGACUCCAGAGGUCGAGAGACCGGAGAUAUCACCC
12 -((((((((((...((((....))))))))...))))))
13 ->>__'UGAA_EUKARYOTIC_RIBOSOMAL_RNA_TETRALOOP,_NMR,_13_STRUCTURES_'_(PDB_00007)
14 -GGUGUGAACACC
15 -((((....))))
16 ->>__'HIV-2_TAR-ARGININAMIDE_COMPLEX,_NMR,_20_STRUCTURES_'_(PDB_00010)
17 -GGCCAGAUUGAGCCUGGGAGCUCUCUGGCC
18 -(((((((..((((......)))))))))))
19 ->>__'CIS-ACTING_RNA_REGULATORY_ELEMENT_(HIV-1_TAR),_NMR,_20_STRUCTURES_'_(PDB_00012)
20 -GGCAGAUCUGAGCCUGGGAGCUCUCUGCC
21 -..(((....((((......)))).)))..
22 ->>__'IRON_RESPONSIVE_ELEMENT_RNA_HAIRPIN,_NMR,_15_STRUCTURES_'_(PDB_00013)
23 -GGAGUGCUUCAACAGUGCUUGGACGCUCC
24 -((((((.((.((......)).))))))))
25 ->>__'THE_STRUCTURE_OF_THE_ISOLATED,_CENTRAL_HAIRPIN_OF_THE_HDV_ANTIGENOMIC_RIBOZYME,_NMR,_10_STRUCTURES_'_(PDB_00014)
26 -GGCACCUCCUCGCGGUGCC
27 -(((((((.....)))))))
28 ->>__'HAIRPIN_WITH_AGAU_TETRALOOP,_NMR,_3_STRUCTURES_'_(PDB_00016)
29 -GCUCCAGAUGGAGCG
30 -(((((....))))).
31 ->>__'NMR_STRUCTURE_OF_THE_DIMER_INITIATION_COMPLEX_OF_HIV-1_GENOMIC_RNA,_MINIMIZED_AVERAGE_STRUCTURE_'_(PDB_00018)
32 -GGCAAUGAAGCGCGCACGUUGCCGGCAAUGAAGCGCGCACGUUGCC
33 -(((((((.[[..[[[[)))))))(((((((.]]]]..]])))))))
34 ->>__'S8_RRNA_BINDING_SITE_FROM_E._COLI,_NMR,_6_STRUCTURES_'_(PDB_00019)
35 -GGGAUACUGCUUCGGUAAGUCCC
36 -((((..((((....)).))))))
37 ->>__'RNA_LOOP-LOOP_COMPLEX:_THE_COLE1_INVERTED_LOOP_SEQUENCE,_NMR,_8_STRUCTURES_'_(PDB_00020)
38 -GGCAACGGAUGGUUCGUUGCCGCACCGAACCAUCCGGUGC
39 -((((((([[[[[[[)))))))((((((]]]]]]]))))))
40 ->>__'SL3_HAIRPIN_FROM_THE_PACKAGING_SIGNAL_OF_HIV-1,_NMR,_11_STRUCTURES_'_(PDB_00021)
41 -GGACUAGCGGAGGCUAGUCC
42 -((((((((....))))))))
43 ->>__'HIV-1_RNA_A-RICH_HAIRPIN_LOOP_'_(PDB_00022)
44 -GGCGACGGUGUAAAAAUCUCGCC
45 -(((((.((((....)))))))))
46 ->>__'STABILIZATION_OF_THE_ANTICODON_STEM-LOOP_OF_TRNALYS,3_BY_AN_A+C_BASE_PAIR_AND_BY_PSEUDOURIDINE,_NMR,_1_STRUCTURE_'_(PDB_00024)
47 -UCAGACUUUUAAUCUGA
48 -((((((.....))))))
49 ->>__'STABILIZATION_OF_THE_ANTICODON_STEM-LOOP_OF_TRNALYS,3_BY_AN_A+C_BASE_PAIR_AND_BY_PSEUDOURIDINE,_NMR,_1_STRUCTURE_'_(PDB_00025)
50 -UCAGACUUUUAAUCUGA
51 -(((((((...)))))))
52 ->>__'STRUCTURE_OF_THE_RIBOZYME_SUBSTRATE_HAIRPIN_OF_NEUROSPORA_VS_RNA._A_CLOSE_LOOK_AT_THE_CLEAVAGE_SITE_'_(PDB_00040)
53 -GUGCGAAGACGAAAGUCCGAGCGC
54 -((((((((((....))))))))))
55 ->>__'SOLUTION_STRUCTURE_OF_THE_PSEUDOKNOT_OF_SRV-1_RNA,_INVOLVED_IN_RIBOSOMAL_FRAMESHIFTING_'_(PDB_00041)
56 -GCGGCCAGCUCCAGGCCGCCAAACAAUAUGGAGCAC
57 -((((((.[[[[[[)))))).........]]]]]]..
58 ->>__'NMR_ANALYSIS_OF_HELIX_I_FROM_THE_5S_RNA_OF_ESCHERICHIA_COLI_'_(PDB_00048)
59 -UUGCCUGGCGGCAACUGCCAGGCAU
60 -..(((((((((...)))))))))..
61 ->>__'NMR_STRUCTURE_OF_STEM_LOOP_SL2_OF_THE_HIV-1_PSI_RNA_PACKAGING_SIGNAL_REVEALS_A_NOVEL_A-U-A_BASE-TRIPLE_PLATFORM_'_(PDB_00051)
62 -GGCGACUGGUGAGUACGCC
63 -(((((((....)).)))))
64 ->>__'CRYSTAL_STRUCTURE_OF_A_BIOTIN-BINDING_RNA_PSEUDOKNOT_'_(PDB_00053)
65 -ACCGUCAGAGGACACGGUUAAAAAGUCCUC
66 -[[[[[..((((((]]]]]......))))))
67 ->>__'SOLUTION_STRUCTURE_OF_THE_KISSING_DIMER_OF_H3_GACG_STEM-_LOOP_IN_THE_5\'-END_DIMERIZATION_SIGNAL_OF_MOLONEY_MURINE_LEUKEMIA_VIRUS_GENOMIC_RNA_'_(PDB_00056)
68 -GGUGGGAGACGUCCCACCGGUGGGAGACGUCCCACC
69 -(((((((..[[)))))))(((((((..]])))))))
70 ->>__'SOLUTION_STRUCTURE_OF_THE_RNASE_P_RNA_(M1_RNA)_P4_STEM_OLIGORIBONUCLEOTIDE_'_(PDB_00057)
71 -GGAAGUCCGGUCUUCGGACCGGCUUCC
72 -(((((.(((((......))))))))))
73 ->>__'SOLUTION_STRUCTURE_OF_RNASE_P_RNA_(M1_RNA)_P4_STEM_OLIGORIBONUCLEOTIDE_COMPLEXED_WITH_COBALT_(III)_HEXAMINE,_NMR,_MINIMIZED_AVERAGE_STRUCTURE_'_(PDB_00059)
74 -GGAAGUCCGGUCUUCGGACCGGCUUCC
75 -(((((.(((((......))))))))))
76 ->>__'SOLUTION_STRUCTURE_OF_HCV_IRES_RNA_DOMAIN_IIID_'_(PDB_00065)
77 -GGCCGAGUAGUGUUGGGUCGCGAAAGGCC
78 -.(((((.(((((......)))))))))).
79 ->>__'NMR_SOLUTION_STRUCTURE_OF_THE_ANTICODON_OF_TRNA(LYS3)_WITH_T6A_MODIFICATION_AT_POSITION_37_'_(PDB_00068)
80 -GCAGACUUUUAAUCUGC
81 -((((((.....))))))
82 ->>__'NMR_STRUCTURE_OF_THE_690_LOOP_OF_16_S_RRNA_OF_E._COLI_'_(PDB_00069)
83 -GGCGGUGAAAUGCC
84 -(((((....)))))
85 ->>__'NMR_VALIDATED_MODEL_OF_DOMAIN_IIID_OF_HEPATITIS_C_VIRUS_INTERNAL_RIBOSOME_ENTRY_SITE_'_(PDB_00073)
86 -GCCGAGUAGUGUUGGGUCGCGAAAGGC
87 -(((((.(((((......))))))))))
88 ->>__'SOLUTION_STRUCTURE_OF_RNA_HAIRPIN_LOOP_UUAACU_AS_PART_OF_HAIRPIN_R(GCGUUAACUCGCA)_'_(PDB_00083)
89 -GCGUUAACUCGCA
90 -((((....)))).
91 ->>__'SOLUTION_STRUCTURE_OF_RNA_HAIRPIN_LOOP_UUAAGU_AS_PART_OF_HAIRPIN_R(GCGUUAAGUCGCA)_'_(PDB_00084)
92 -GCGUUAAGUCGCA
93 -((((....)))).
94 ->>__'SOLUTION_STRUCTURE_OF_RNA_HAIRPIN_LOOP_UUAAUU_AS_PART_OF_HAIRPIN_R(GCGUUAAUUCGCA)_'_(PDB_00085)
95 -GCGUUAAUUCGCA
96 -((((....)))).
97 ->>__'SOLUTION_STRUCTURE_OF_RNA_HAIRPIN_LOOP_UUAAAU_AS_PART_OF_HAIRPIN_R(GCGUUAAAUCGCA)_'_(PDB_00086)
98 -GCGUUAAAUCGCA
99 -((((....)))).
100 ->>__'SOLUTION_STRUCTURE_OF_RNA_HAIRPIN_LOOP_UCAAUU_AS_PART_OF_HAIRPIN_R(GCGUCAAUUCGCA)_'_(PDB_00087)
101 -GCGUCAAUUCGCA
102 -((((....)))).
103 ->>__'SOLUTION_STRUCTURE_OF_THE_VS_RIBOZYME_SUBSTRATE_STEM-LOOP_'_(PDB_00088)
104 -GGUGCGAAGGGCGUCGUCGCCCCGAGCGCC
105 -((((((((((((......))))))))))))
106 ->>__'SOLUTION_STRUCTURE_OF_THE_A_LOOP_OF_23S_RIBOSOMAL_RNA_'_(PDB_00089)
107 -GGCUGGCUGUUCGCCAGCC
108 -((((((((...))))))))
109 ->>__'SOLUTION_STRUCTURE_OF_THE_A_LOOP_OF_23S_RIBOSOMAL_RNA._'_(PDB_00090)
110 -GGCUGGCUGUUCGCCAGCC
111 -((((((((...))))))))
112 ->>__'THE_SOLUTION_STRUCTURE_OF_THE_MUTANT_STEM_LOOP_C_5\'GUA3\'_TRILOOP_OF_BROME_MOSAIC_VIRUS_(+)_STRAND_RNA_'_(PDB_00091)
113 -GGUGCGUAGCACC
114 -(((((...)))))
115 ->>__'THE_SOLUTION_STRUCTURE_OF_THE_MAJOR_FAMILY_OF_THE_MUTANT_STEM_LOOP_C_5\'UUA3\'_TRILOOP_OF_BROME_MOSAIC_VIRUS_(+)_STRAND_RNA_'_(PDB_00092)
116 -GGUGCUUAGCACC
117 -(((((...)))))
118 ->>__'THE_SOLUTION_STRUCTURE_OF_THE_MINOR_FAMILY_OF_THE_MUTANT_STEM_LOOP_C_5\'UUA3\'_TRILOOP_OF_BROME_MOSAIC_VIRUS_(+)_STRAND_RNA_'_(PDB_00093)
119 -GGUGCUUAGCACC
120 -(((((...)))))
121 ->>__'CRYSTAL_STRUCTURE_ANALYSIS_OF_A_TRNA-NEOMYCIN_COMPLEX_'_(PDB_00095)
122 -GCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGACUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA
123 -(((((((..((((........))))(((((........)))))....(((((.......))))))))))))....
124 ->>__'NMR_STRUCTURE_OF_HCV_IRES_RNA_DOMAIN_IIIC_'_(PDB_00097)
125 -GGGCGUGCCC
126 -(((....)))
127 ->>__'NMR_SOLUTION_STRUCTURE_OF_AN_IN_VITRO_SELECTED_RNA_WHICH_IS_SEQUENCE_SPECIFICALLY_RECOGNIZED_BY_HAMSTER_NUCLEOLIN_RBD12._'_(PDB_00098)
128 -GGCCGAAAUCCCGAAGUAGGCC
129 -((((((..........))))))
130 ->>__'SOLUTION_STRUCTURE_OF_AN_IN_VITRO_SELECTED_RNA_WHICH_IS_SEQUENCE_SPECIFICALLY_RECOGNIZED_BY_RBD12_OF_HAMSTER_NUCLEOLIN.SNRE_(ANTI)_'_(PDB_00099)
131 -GGCCGAAAUCCCGAAGUAGGCC
132 -((((((..........))))))
133 ->>__'SOLUTION_STRUCTURE_OF_AN_RNA_HAIRPIN_FROM_HRV-14_'_(PDB_00100)
134 -GGUACUAUGUACCA
135 -(((((...))))).
136 ->>__'SOLUTION_STRUCTURE_OF_THE_UNMODIFIED_ANTICODON_STEM-LOOP_FROM_E._COLI_TRNA(PHE)_'_(PDB_00103)
137 -GGGGAUUGAAAAUCCCC
138 -(((((((...)))))))
139 ->>__'NMR_STRUCTURE_OF_THE_LP5.1_HAIRPIN_FROM_BACILLUS_RNASE_P_RNA_REFINED_WITH_RESIDUAL_DIPOLAR_COUPLINGS_'_(PDB_00108)
140 -GGCGGUGCUGAGAUGCCCGUC
141 -(((((.((......)))))))
142 ->>__'NMR_STRUCTURE_OF_THE_LP5.1_HAIRPIN_FROM_BACILLUS_RNASE_P_RNA_REFINED_WITHOUT_RESIDUAL_DIPOLAR_COUPLINGS_'_(PDB_00109)
143 -GGCGGUGCUGAGAUGCCCGUC
144 -(((((.((......)))))))
145 ->>__'SOLUTION_STRUCTURE_OF_HIV-1LAI_MUTATED_SL1_HAIRPIN_'_(PDB_00110)
146 -CUUGCUGAAGCACGCACGGCAAG
147 -(((((((.........)))))))
148 ->>__'THE_SOLUTION_STRUCTURE_OF_THE_MUTANT_5\'AUG3\'_TRILOOP_IN_THE_RNA_PROMOTER_REGION_OF_THE_BROME_MOSAIC_VIRUS_GENOMIC_(+)-_RNA_'_(PDB_00114)
149 -GGUGCAUGGCACC
150 -((((.....))))
151 ->>__'STRUCTURE_OF_AGUU_RNA_TETRALOOP,_NMR,_20_STRUCTURES_'_(PDB_00118)
152 -GGUUCAGUUGAACC
153 -(((((....)))))
154 ->>__'NMR_STRUCTURE_OF_A_RIBOSOMAL_RNA_HAIRPIN_CONTAINING_A_CONSERVED_CUCAA_PENTALOOP_'_(PDB_00119)
155 -GGACCCGGGCUCAACCUGGGUCC
156 -((((((((((...))))))))))
157 ->>__'HIV-1(MAL)_RNA_DIMERIZATION_INITIATION_SITE_'_(PDB_00123)
158 -UUUGCUGAGGUGCACACAGCAAUUUUGCUGAGGUGCACACAGCAAUUUUGCUGAGGUGCACACAGCAAUUUUGCUGAGGUGCACACAGCAAU
159 -..(((((..[[[[[[.)))))..(((((((..]]]]]].)))))))..(((((..[[[[[[.)))))..(((((((..]]]]]].)))))))
160 ->>__'CONFORMATION_OF_AN_RNA_PSEUDOKNOT_FROM_MOUSE_MAMMARY_TUMOR_VIRUS,_NMR,_1_STRUCTURE_'_(PDB_00124)
161 -GGCGCAGUGGGCUAGCGCCACUCAAAAGCCCG
162 -((((((..[[[[.))))))........]]]].
163 ->>__'TAR-TAR_"KISSING"_HAIRPIN_COMPLEX_DERIVED_FROM_THE_HIV_GENOME,_NMR,_1_STRUCTURE_'_(PDB_00128)
164 -GAGCCCUGGGAGGCUCGCUGUUCCCAGACAGC
165 -((((([[[[..)))))(((((.]].]])))))
166 ->>__'SOLUTION_STRUCTURE_OF_THE_UNMODIFIED_ANTICODON_STEM-LOOP_FROM_E._COLI_TRNA(PHE)_'_(PDB_00129)
167 -GGGGAUUGAAAAUCCCC
168 -(((((((...)))))))
169 ->>__'STRUCTURE_OF_THE_HISTONE_MRNA_HAIRPIN_REQUIRED_FOR_CELL_CYCLE_REGULATION_OF_HISTONE_GENE_EXPRESSION_'_(PDB_00130)
170 -GGAAGGCCCUUUUCAGGGCCACCC
171 -....((((((....))))))....
172 ->>__'SOLUTION_NMR_STRUCTURE_OF_AN_ANALOG_OF_THE_YEAST_TRNA_PHE_T_STEM_LOOP_CONTAINING_RIBOTHYMIDINE_AT_ITS_NATURALLY_OCCURRING_POSITION_'_(PDB_00131)
173 -CUGUGUUCGAUCCACAG
174 -(((((.......)))))
175 ->>__'A_MUTANT_RNA_PSEUDOKNOT_THAT_PROMOTES_RIBOSOMAL_FRAMESHIFTING_IN_MOUSE_MAMMARY_TUMOR_VIRUS,_NMR,_MINIMIZED_AVERAGE_STRUCTURE_'_(PDB_00133)
176 -GGCGCAGUGGGCUAGCGCCACUCAAAGGCCCG
177 -(((((...[[[[[.))))).......]]]]].
178 ->>__'PEMV-1_P1-P2_FRAMESHIFTING_PSEUDOKNOT,_15_LOWEST_ENERGY_STRUCTURES_'_(PDB_00134)
179 -UCCGGUCGACUCCGGAGAAACAAAGUCA
180 -(((((..[[[.)))))........]]].
181 ->>__'PEMV-1_P1-P2_FRAMESHIFTING_PSEUDOKNOT_REGULARIZED_AVERAGE_STRUCTURE_'_(PDB_00135)
182 -UCCGGUCGACUCCGGAGAAACAAAGUCA
183 -(((((..[[..))))).........]].
184 ->>__'ATOMIC_RESOLUTION_CRYSTAL_STRUCTURE_OF_A_VIRAL_RNA_PSEUDOKNOT_'_(PDB_00138)
185 -GGCGCGGCACCGUCCGCGGAACAAACGG
186 -..(((((..[[[.))))).......]]]
187 ->>__'LOW_RESOLUTION_CRYSTAL_STRUCTURE_OF_A_VIRAL_RNA_PSEUDOKNOT_'_(PDB_00139)
188 -GGCGCGGCACCGUCCGCGGAACAAACGG
189 -..(((((..[[[.))))).......]]]
190 ->>__'SOLUTION_STRUCTURE_OF_THE_U6_INTRAMOLECULAR_STEM-LOOP_RNA_'_(PDB_00141)
191 -GGUUCCCCUGCAUAAGGAUGAACC
192 -((((((((((...))))).)))))
193 ->>__'NMR_SOLUTION_STRUCTURE_OF_THE_ANTICODON_OF_YEAST_TRNA-PHE_WITH_4_MODIFICATIONS_(OMC32_OMG34_1MG37_5MC40)_'_(PDB_00147)
194 -CCAGACUGAAGAUCUGG
195 -((((((.....))))))
196 ->>__'NMR_SOLUTION_STRUCTURE_OF_THE_ANTICODON_OF_YEAST_TRNA-PHE_WITH_3_MODIFICATIONS_(OMC32_OMG34_M5C40)_'_(PDB_00148)
197 -CCAGACUGAAGAUCUGG
198 -((((((.....))))))
199 ->>__'CRYSTAL_STRUCTURE_ANALYSIS_OF_A_26MER_RNA_MOLECULE,_REPRESENTING_A_NEW_RNA_MOTIF,_THE_HOOK-TURN_'_(PDB_00155)
200 -CCAUGCGAACCGCGAUCCUAGUGUGG
201 -((((((((..........))))))))
202 ->>__'STRUCTURE_OF_23S_RIBOSOMAL_RNA_HAIRPIN_35_'_(PDB_00160)
203 -GGCGUAACGUUGAAAAGUUACGCC
204 -(((((((((......)))))))))
205 ->>__'SOLUTION_STRUCTURE_OF_B._SUBTILIS_T_BOX_ANTITERMINATOR_RNA_'_(PDB_00168)
206 -GAGGGUGGAACCGCGCGCGUCCCUC
207 -((((........((....)).))))
208 ->>__'SOLUTION_STRUCTURE_OF_THE_P2B_HAIRPIN_FROM_HUMAN_TELOMERASE_RNA_'_(PDB_00171)
209 -GGGCUGUUUUUCUCGCUGACUUUCAGCCCC
210 -((((((((((((.....)))))))))))).
211 ->>__'IRON_RESPONSIVE_ELEMENT_RNA_HAIRPIN,_NMR,_15_STRUCTURES_'_(PDB_00172)
212 -GGAGUGCUUCAACAGUGCUUGGACGCUCC
213 -((((((.(((((......)))))))))))
214 ->>__'U80G_U6_INTRAMOLECULAR_STEM-LOOP_RNA_FROM_SACCHAROMYCES_CEREVISIAE_'_(PDB_00173)
215 -GGUUCCCCUGCAUAAGGAGGAACC
216 -((((((((((...)))).))))))
217 ->>__'SOLUTION_STRUCTURE_OF_THE_S._CEREVISIAE_U6_INTRAMOLECULAR_STEM-LOOP_CONTAINING_AN_SP_PHOSPHOROTHIOATE_AT_NUCLEOTIDE_U80_'_(PDB_00177)
218 -GGUUCCCCUGCAUAAGGAUGAACC
219 -((((((((((...))))).)))))
220 ->>__'P6.1_STEM_LOOP_FROM_THE_ACTIVATION_DOMAIN_OF_HTR_'_(PDB_00180)
221 -GAGAGUUGGGCUCUC
222 -((((((...))))))
223 ->>__'SOLUTION_STRUCTURE_OF_HCV_IRES_DOMAIN_IIB_'_(PDB_00184)
224 -GGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGCC
225 -(((((((((((((.......))))))).))))))
226 ->>__'SOLUTION_STRUCTURE_OF_HCV_IRES_DOMAIN_II_'_(PDB_00185)
227 -GGCUGUGAGGAACUACUGUCUUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGCC
228 -(((((.((((.....((((((.((((((((..(((((.......)))))...)))))))).)).)))))))))))))
229 ->>__'SOLUTION_STRUCTURE_OF_HCV_IRES_DOMAIN_II_(MINIMIZED_AVERAGE_STRUCTURE)_'_(PDB_00186)
230 -GGCUGUGAGGAACUACUGUCUUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGCC
231 -(((((.((((.....((((((((((((((((((((((.......))))))).))))))))))).)))))))))))))
232 ->>__'SOLUTION_STRUCTURE_OF_THE_DYSKERATOSIS_CONGENITA_MUTANT_P2B_HAIRPIN_FROM_HUMAN_TELOMERASE_RNA_'_(PDB_00191)
233 -GGCUCUCAGUGAGCC
234 -(((((.....)))))
235 ->>__'NMR_STRUCTURE_OF_TAU_EXON_10_SPLICING_REGULATORY_ELEMENT_RNA_'_(PDB_00197)
236 -GGCAGUGUGAGUACCUUCACACGUC
237 -....(((((((....)))))))...
238 ->>__'NMR_STRUCUTRE_OF_5\'-R(GGACACGAAAUCCCGAAGUAGUGUCC)-3\'_:_AN_RNA_HAIRPIN_CONTAINING_THE_IN_VITRO_SELECTED_CONSENSUS_SEQUENCE_FOR_NUCLEOLIN_RBD12_'_(PDB_00201)
239 -GGACACGAAAUCCCGAAGUAGUGUCC
240 -((((((((((.....)).))))))))
241 ->>__'24-MER_RNA_HAIRPIN_COAT_PROTEIN_BINDING_SITE_FOR_BACTERIOPHAGE_R17_(NMR,_MINIMIZED_AVERAGE_STRUCTURE)_'_(PDB_00206)
242 -GGGACUGACGAUCACGCAGUCUAU
243 -.((((((.((....))))))))..
244 ->>__'THE_STRUCTURE_OF_AN_RNA_PSEUDOKNOT_THAT_CAUSES_EFFICIENT_FRAMESHIFTING_IN_MOUSE_MAMMARY_TUMOR_VIRUS_'_(PDB_00209)
245 -GGCGCAGUGGGCUAGCGCCACUCAAAAGGCCCAU
246 -[[[[[..((((((.]]]]]........)))))).
247 ->>__'FIRST_STEM_LOOP_OF_THE_SL1_RNA_FROM_CAENORHABDITIS_ELEGANS,_NMR,_MINIMIZED_AVERAGE_STRUCTURE_'_(PDB_00216)
248 -UUACCCAAGUUUGAGGUAA
249 -(((((((....)).)))))
250 ->>__'FIRST_STEM_LOOP_OF_THE_SL1_RNA_FROM_CAENORHABDITIS_ELEGANS,_NMR,_16_STRUCTURES_'_(PDB_00217)
251 -UUACCCAAGUUUGAGGUAA
252 -(((((((....)).)))))
253 ->>__'REFINED_SOLUTION_STRUCTURE_OF_THE_S._CEREVISIAE_U6_INTRAMOLECULAR_STEM_LOOP_(ISL)_RNA_USING_RESIDUAL_DIPOLAR_COUPLINGS_(RDCS)_'_(PDB_00218)
254 -GGUUCCCCUGCAUAAGGAUGAACC
255 -((((((((((...))))).)))))
256 ->>__'SOLUTION_STRUCTURE_OF_ITALY1_("INITIATOR_TRNA_ANTICODON_LOOP_FROM_YEAST"),_AN_UNMODIFIED_21-NT_RNA_WITH_THE_SEQUENCE_OF_THE_ANTICODON_STEM-LOOP_OF_YEAST_INITIATOR_TRNA_'_(PDB_00219)
257 -GGCAGGGCUCAUAACCCUGCC
258 -(((((((.......)))))))
259 ->>__'STEM_LOOP_IIA_FROM_U2SNRNA_OF_SACCHAROMYCES_CEREVISIAE,_NMR,_MINIMIZED_AVERAGE_STRUCTURE_'_(PDB_00224)
260 -GGUCAGUGUAACAACUGACC
261 -((((((((....))))))))
262 ->>__'STRUCTURE_OF_AN_RNA_HAIRPIN_LOOP_WITH_A_5\'-CGUUUCG-3\'_LOOP_MOTIF_BY_HETERONUCLEAR_NMR_SPECTROSCOPY_AND_DISTANCE_GEOMETRY,_15_STRUCTURES_'_(PDB_00225)
263 -GGCGUACGUUUCGUACGCC
264 -(((((((.....)))))))
265 ->>__'CONSERVED_RNA_COMPONENT_OF_THE_PEPTIDYL_TRANSFERASE_CENTER,_NMR,_33_STRUCTURES_'_(PDB_00226)
266 -GACUGGGGCGGUC
267 -(((((...)))))
268 ->>__'YEAST_INITIATOR_TRNA_'_(PDB_00229)
269 -AGCGCCGUGGCGCAGUGGAAGCGCGCAGGGCUCAUAACCCUGAUGUCCUCGGAUCGAAACCGAGCGGCGCUACCA
270 -(((((((..((((.......))))(((((((.....)))))))....(((((.......))))))))))))....
271 ->>__'GAAA_RNA_TETRALOOP,_NMR,_10_STRUCTURES_'_(PDB_00231)
272 -GGGCGAAAGCCU
273 -(((......)))
274 ->>__'SOLUTION_NMR_STRUCTURE_OF_A_SUBSTRATE_FOR_THE_ARCHAEAL_PRE-_TRNA_SPLICING_ENDONUCLEASES:_THE_BULGE-HELIX-BULGE_MOTIF,_MINIMIZED_AVERAGE_STRUCTURE_'_(PDB_00240)
275 -GGGUGACUCCAGAGGUCGAGAGACCGGAGAUAUCACCC
276 -((((((((((...((((....))))))))...))))))
277 ->>__'RNA_LOOP-LOOP_COMPLEX:_THE_COLE1_INVERTED_LOOP_SEQUENCE,_NMR,_MINIMIZED_AVERAGE_STRUCTURE_'_(PDB_00241)
278 -GGCAACGGAUGGUUCGUUGCCGCACCGAACCAUCCGGUGC
279 -((((((([[[[[[[)))))))((((((]]]]]]]))))))
280 ->>__'AN_INVESTIGATION_OF_THE_STRUCTURE_OF_THE_PSEUDOKNOT_WITHIN_THE_GENE_32_MESSENGER_RNA_OF_BACTERIOPHAGE_T2_USING_HETERONUCLEAR_NMR_METHODS_'_(PDB_00243)
281 -GCUGACCAGCUAUGAGGUCAUACAUCGUCAUAGCAC
282 -..[[[[[.(((((((]]]]].......)))))))..
283 ->>__'STEM_LOOP_IIA_FROM_U2_SNRNA_OF_SACCHAROMYCES_CEREVISIAE,_NMR,_MINIMIZED_AVERAGE_STRUCTURE_'_(PDB_00245)
284 -GGUCAGUGUAACAACUGACC
285 -((((((((....))))))))
286 ->>__'RNA_PSEUDOKNOT_WITH_3D_DOMAIN_SWAPPING_'_(PDB_00256)
287 -UCCGAAGUGCAACGGGAAAAUGCACU
288 -.((((......))))...........
289 ->>__'STRUCTURE_OF_THE_3\'_HAIRPIN_OF_THE_TYMV_PSEUDOKNOT:_PREFORMATION_IN_RNA_FOLDING_'_(PDB_00258)
290 -GGUUCCGAGGGUCAUCGGAACCA
291 -((((((((......)))))))).
292 ->>__'CRYSTAL_STRUCTURE_OF_AN_RNA_PSEUDOKNOT_FROM_BEET_WESTERN_YELLOW_VIRUS_INVOLVED_IN_RIBOSOMAL_FRAMESHIFTING_'_(PDB_00269)
293 -GGCGCGGCACCGUCCGCGGAACAAACGG
294 -..(((((..[[[.))))).......]]]
295 ->>__'STRUCTURE_OF_THE_HIV-1_NUCLEOCAPSID_PROTEIN_BOUND_TO_THE_SL3_PSI-RNA_RECOGNITION_ELEMENT,_NMR,_25_STRUCTURES_'_(PDB_00285)
296 -GGACUAGCGGAGGCUAGUCC
297 -((((((((....))))))))
298 ->>__'SATELLITE_TOBACCO_MOSAIC_VIRUS/RNA_COMPLEX_'_(PDB_00286)
299 -AAAAAAAAAAUUUUUUUUUU
300 -..((((((...))))))...
301 ->>__'LOOP_D/LOOP_E_ARM_OF_ESCHERICHIA_COLI_5S_RRNA,_NMR,_MINIMIZED_AVERAGE_STRUCTURE_'_(PDB_00288)
302 -GGCCGAUGGUAGUGUGGGGUCUCCCCAUGCGAGAGUAGGCC
303 -(((((((((((((((((((...)))))))))))))))))))
304 ->>__'SOLUTION_STRUCTURE_OF_PHAGE_P22_N_PEPTIDE-BOX_B_RNA_COMPLEX,_NMR,_20_STRUCTURES_'_(PDB_00289)
305 -GCGCUGACAAAGCGC
306 -((((((...))))))
307 ->>__'CRYSTAL_STRUCTURE_OF_THE_SPLICEOSOMAL_U2B\'\'-U2A\'_PROTEIN_COMPLEX_BOUND_TO_A_FRAGMENT_OF_U2_SMALL_NUCLEAR_RNA_'_(PDB_00293)
308 -CCUGGUAUUGCAGUACCUCCAGGUCCUGGUAUUGCAGUACCUCCAGGU
309 -((((((...........)))))).((((((...........)))))).
310 ->>__'HIV-2_TRANS_ACTIVATING_REGION_RNA_COMPLEX_WITH_ARGININAMIDE,_NMR,_MINIMIZED_AVERAGE_STRUCTURE_'_(PDB_00299)
311 -GGCCAGAUUGAGCCUGGGAGCUCUCUGGCC
312 -(((((((..((((......)))))))))))
313 ->>__'BACTERIOPHAGE_MS2_CAPSID_PROTEIN/RNA_COMPLEX_'_(PDB_00303)
314 -AUGAGGAUUACCCAUGUGAGGAUUACCC
315 -(((.((....)))))....((....)).
316 ->>__'STRUCTURE_OF_A_MS2_COAT_PROTEIN_MUTANT_IN_COMPLEX_WITH_AN_RNA_OPERATOR_'_(PDB_00304)
317 -AUGAGGAUUACCCAUGAUGAGGAUUACCCA
318 -(((.((....)))))..((.((....))))
319 ->>__'ARG-BOUND_TAR_RNA,_NMR_'_(PDB_00306)
320 -GGCAGAUCUGAGCCUGGGAGCUCUCUGCC
321 -..((((...((((......))))))))..
322 ->>__'U1A-UTRRNA,_NMR,_31_STRUCTURES_'_(PDB_00312)
323 -GGCAGAGUCCUUCGGGACAUUGCACCUGCC
324 -(((((.((((....)))).......)))))
325 ->>__'BOVINE_IMMUNODEFICIENCY_VIRUS_TAT-TAR_COMPLEX,_NMR,_5_STRUCTURES_'_(PDB_00317)
326 -GGCUCGUGUAGCUCAUUAGCUCCGAGCC
327 -((((((...((((....)))).))))))
328 ->>__'HEPATITIS_DELTA_VIRUS_RIBOZYME_'_(PDB_00335)
329 -GGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGCGAAUGGGAC
330 -(((((((...[[[[[[(((.[[.....))))))))))]]...(((((..........)))))....]]]]]]
331 ->>__'NMR_SOLUTION_STRUCTURE_OF_THE_5S_RRNA_E-LOOP/L25_COMPLEX_'_(PDB_00339)
332 -GGACCGAUGGUAGUGUCUUCGGAUGCGAGAGUAGGUC
333 -.((((((((((((((((....))))))))))))))))
334 ->>__'CRYSTAL_STRUCTURE_OF_E.COLI_RIBOSOMAL_PROTEIN_L25_COMPLEXED_WITH_A_5S_RRNA_FRAGMENT_AT_1.8_A_RESOLUTION_'_(PDB_00341)
335 -CCCAUGCGAGAGUAGGGACUGCCGAUGGUAGUGUGGGG
336 -((((((((((((((((.....)))))))))))))))).
337 ->>__'U1A_SPLICEOSOMAL_PROTEIN/HEPATITIS_DELTA_VIRUS_GENOMIC_RIBOZYME_COMPLEX_'_(PDB_00346)
338 -GGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGCGAAUGGGAC
339 -(((((((...[[[[[[(((.[[.....))))))))))]]...(((((..........)))))....]]]]]]
340 ->>__'CORE_OF_THE_ALU_DOMAIN_OF_THE_MAMMALIAN_SRP_'_(PDB_00352)
341 -GGGCCGGGCGCGGUGGCGCGCGCCUGUAGUCCCAGCUACUCGGGAGGCUC
342 -(((((((((((((..[[))))))))....((((.]].....)))))))))
343 ->>__'CRYSTAL_STRUCTURE_OF_NOVA-2_KH3_K-HOMOLOGY_RNA-BINDING_DOMAIN_BOUND_TO_20-MER_RNA_HAIRPIN_'_(PDB_00357)
344 -GAGGACCUAGAUCACCCCUCGAGGACCUAGAUCACCCCUC
345 -(((((..........)))))(((((..........)))))
346 ->>__'STRUCTURAL_BASIS_FOR_RECOGNITION_OF_THE_RNA_MAJOR_GROOVE_IN_THE_TAU_EXON_10_SPLICING_REGULATORY_ELEMENT_BY_AMINOGLYCOSIDE_ANTIBIOTICS_'_(PDB_00361)
347 -GGCAGUGUGAGUACCUUCACACGUC
348 -....((((((......))))))...
349 ->>__'THE_CRYSTAL_STRUCTURE_OF_PHENYLALANYL-TRNA_SYNTHETASE_FROM_THERMUS_THERMOPHILUS_COMPLEXED_WITH_COGNATE_TRNAPHE_'_(PDB_00362)
350 -GCCGAGGUAGCUCAGUUGGUAGAGCAUGCGACUGAAAAUCGCAGUGUCCGCGGUUCGAUUCCGCGCCUCGGCACCA
351 -(((((((..((((........))))((((((.......))))))....(((((.......))))))))))))....
352 ->>__'CRYSTAL_STRUCTURE_OF_GLUTAMINYL-TRNA_SYNTHETASE_COMPLEXED_WITH_A_TRNA-GLN_MUTANT_AND_AN_ACTIVE-SITE_INHIBITOR_'_(PDB_00373)
353 -GGGGUAUCGCCAAGCGGUAAGGCACCGGAUUCUGAUUCCGGCAGCGAGGUUCGAAUCCUCGUACCCCAGCCA
354 -((((((..((((.......))))((((((((...))))))))..(((((.......))))))))))).....
355 ->>__'GLUTAMINYL-TRNA_SYNTHETASE_COMPLEXED_WITH_A_TRNA_MUTANT_AND_AN_ACTIVE_SITE_INHIBITOR_'_(PDB_00374)
356 -GGGGUAUCGCCAAGCGGUAAGGCACCGGAUUCUGAUUCCGGCAAGCGAGGUUCGAAUCCUCGUACCCCAGCCA
357 -((((((..((((.......))))((((((((...))))))))...(((((.......))))))))))).....
358 ->>__'CRYSTAL_STRUCTURE_OF_A_TIGHT-BINDING_GLUTAMINE_TRNA_BOUND_TO_GLUTAMINE_AMINOACYL_TRNA_SYNTHETASE_'_(PDB_00376)
359 -GGGGUAUCGCCAAGCGGUAAGGCACCGGAUUCUGAUUCCGGAGGUCGAGGUUCGAAUCCUCGUACCCCAGCCA
360 -((((((..(((.........)))((((((((...))))))))...(((((.......))))))))))).....
361 ->>__'SOLUTION_STRUCTURE_OF_HTLV-1_PEPTIDE_BOUND_TO_ITS_RNA_APTAMER_TARGET_'_(PDB_00377)
362 -GGGCGCCGGUACGCAAGUACGACGGUACGCUCC
363 -((((((((((((....))))..)))..))))).
364 ->>__'NMR_STRUCTURE_OF_THE_HIV-1_NUCLEOCAPSID_PROTEIN_BOUND_TO_STEM-LOOP_SL2_OF_THE_PSI-RNA_PACKAGING_SIGNAL._IMPLICATIONS_FOR_GENOME_RECOGNITION_'_(PDB_00383)
365 -GGCGACUGGUGAGUACGCC
366 -(((((((....)).)))))
367 ->>__'INSIGHTS_INTO_EDITING_FROM_AN_ILE-TRNA_SYNTHETASE_STRUCTURE_WITH_TRNA(ILE)_AND_MUPIROCIN_'_(PDB_00402)
368 -GGGCUUGUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCGGUGGUUCAAGUCCACUCAGGCCCAC
369 -(((((((..((((.........))))(((((((.....)))))))....(((((.......))))))))))))..
370 ->>__'SOLUTION_STRUCTURE_OF_NUCLEOLIN_RBD12_IN_COMPLEX_WITH_SNRE_RNA_'_(PDB_00407)
371 -GGCCGAAAUCCCGAAGUAGGCC
372 -((((((..........))))))
373 ->>__'COMPLEX_OF_HIV-1_RRE-IIB_RNA_WITH_RSG-1.2_PEPTIDE_'_(PDB_00420)
374 -GGUCUGGGCGCACUUCGGUGACGGUACAGGCC
375 -...((((((((((....))).))).))))...
376 ->>__'STRUCTURAL_BASIS_OF_ANTICODON_LOOP_RECOGNITION_BY_GLUTAMINYL-TRNA_SYNTHETASE_'_(PDB_00425)
377 -GGGGUAUCGCCAAGCGGUAAGGCACCGGAUUCUGAUUCCGGCAUUCCGAGGUUCGAAUCCUCGUACCCCAGCCA
378 -((((((..(((.........)))((((((((...))))))))....(((((.......))))))))))).....
379 ->>__'STRUCTURAL_BASIS_FOR_TRANSFER_RNA_AMINOACEYLATION_BY_ESCHERICHIA_COLI_GLUTAMINYL-TRNA_SYNTHETASE_'_(PDB_00426)
380 -GGGGUAUCGCCAAGCGGUAAGGCACCGGAUUCUGAUUCCGGCAUUCCGAGGUUCGAAUCCUCGUACCCCAGCCA
381 -((((((..(((.........))).(((((((...))))))).....(((((.......))))))))))).....
382 ->>__'BACTERIOPHAGE_HK022_NUN-PROTEIN-NUTBOXB-RNA_COMPLEX_'_(PDB_00434)
383 -GCCCUGAAAAAGGGC
384 -((((((...))))))
385 ->>__'CRYSTAL_STRUCTURE_OF_ARCHAEAL_TYROSYL-TRNA_SYNTHETASE_COMPLEXED_WITH_TRNA(TYR)_AND_L-TYROSINE_'_(PDB_00474)
386 -CCGGCGGUAGUUCAGCCUGGUAGAACGGCGGACUGUAGAUCCGCAUGUCGCUGGUUCAAAUCCGGCCCGCCGGA
387 -(((((((..((((.........))))(((((((.....)))))))....(((((.......)))))))))))).
388 ->>__'CRYSTAL_STRUCTURE_OF_THE_RIBOTOXIN_RESTRICTOCIN_AND_A_31-_MER_SRD_RNA_INHIBITOR_'_(PDB_00481)
389 -GCGCUCCUCAGUACGAGAGGAACCGGAGCGCGCGCUCCUCAGUACGAGAGGAACCGGAGCGC
390 -((((((((((.(((....)))))))))))))((((((((((.(((....)))))))))))))
391 ->>__'CRYSTAL_STRUCTURE_OF_RIBOTOXIN_RESTRICTOCIN_AND_A_29-MER_SRD_RNA_ANALOG_'_(PDB_00482)
392 -CGCUCCUCAGUACGAUAGGAACCGGAGCGCGCUCCUCAGUACGAUAGGAACCGGAGCG
393 -(((((((((.(((....))))))))))))(((((((((.(((....))))))))))))
394 ->>__'CRYSTAL_STRUCTURE_OF_RIBOTOXIN_RESTRICTOCIN_COMPLEXED_WITH_A_29-MER_SARCIN/RICIN_DOMAIN_RNA_ANALOG_'_(PDB_00483)
395 -CGCUCCUCAGUACGAGAGGAACCGGAGCGCGCUCCUCAGUACGAGAGGAACCGGAGCG
396 -(((((((((.(((....))))))))))))(((((((((.(((....))))))))))))
397 ->>__'HUMAN_SRP19_IN_COMPLEX_WITH_HELIX_6_OF_HUMAN_SRP_RNA_'_(PDB_00487)
398 -GGUGACCUCCCGGGAGCGGGGGACCACUA
399 -((((((((((((....)))))))))))).
400 ->>__'NMR_SOLUTION_STRUCTURE_OF_THE_RNA_HAIRPIN_BINDING_SITE_FOR_THE_HISTONE_STEM-LOOP_BINDING_PROTEIN_'_(PDB_00495)
401 -GGCCCUUUUCAGGGCC
402 -((((((....))))))
403 ->>__'NMR_SOLUTION_STRUCTURE_OF_THE_RNA_HAIRPIN_BINDING_SITE_FOR_THE_HISTONE_STEM-LOOP_BINDING_PROTEIN_'_(PDB_00497)
404 -GGCCCUUUUCAGGGCC
405 -....((....))....
406 ->>__'CRYSTAL_STRUCTURE_OF_THE_E._COLI_PSEUDOURIDINE_SYNTHASE_TRUB_BOUND_TO_A_T_STEM-LOOP_RNA_'_(PDB_00513)
407 -GGCAACGGUUCGAUCCCGUUGC
408 -.(((((((.......)))))))
409 ->>__'RNA_APTAMER_COMPLEXED_WITH_ARGININE,_NMR_'_(PDB_00526)
410 -AGAAGGAGCGUACAGGUAGGUCGCU
411 -.....(((...........)))...
412 ->>__'CRYSTAL_STRUCTURE_OF_T3C_MUTANT_S15_RIBOSOMAL_PROTEIN_IN_COMPLEX_WITH_16S_RRNA_'_(PDB_00535)
413 -GGGCGGCCUUCGGGCUAGACGGUGGGAGAGGCUUCGGCUGGUCCACCCGUGACGCUC
414 -((((.(((....)))...((((((((((.(((....)))))))))).)))...))))
415 ->>__'CRYSTAL_STRUCTURE_OF_THE_SRP19-7S.S_SRP_RNA_COMPLEX_OF_M._JANNASCHII_'_(PDB_00547)
416 -UCGGCGGUGGGGGAGCAUCUCCUGUAGGGGAGAUGUAACCCCCUUUACCUGCCGAACCCCGCCAGGCCCGGAAGGGAGCAACGGUAGGCAGGACGUC
417 -..((((..(((((.(((((((((....)))))))))..)))))....((((((((....((((.(((((....))))).)))).)))))))).))))
418 ->>__'STRUCTURE_OF_TAR_RNA_COMPLEXED_WITH_A_TAT-TAR_INTERACTION_NANOMOLAR_INHIBITOR_THAT_WAS_IDENTIFIED_BY_COMPUTATIONAL_SCREENING_'_(PDB_00553)
419 -GGCCAGAUCUGAGCCUGGGAGCUCUCUGGCC
420 -(((((((...((((......)))))))))))
421 ->>__'DETAILED_ANALYSIS_OF_RNA-PROTEIN_INTERACTIONS_WITHIN_THE_BACTERIAL_RIBOSOMAL_PROTEIN_L5/5S_RRNA_COMPLEX_'_(PDB_00570)
422 -GGCACCUGACCCCAUGCCGAACUCAGAAGUGCCCGGCACCUGACCCCAUGCCGAACUCAGAAGUGCCC
423 -(((((((((....((....)).))))..))))).(((((((((....((....)).))))..))))).
424 ->>__'BIV_TAT_PEPTIDE_(RESIDUES_68-81),_NMR,_MINIMIZED_AVERAGE_STRUCTURE_'_(PDB_00574)
425 -GGCUCGUGUAGCUCAUUAGCUCCGAGCC
426 -((((((...((((....)))).))))))
427 ->>__'LAMBDA3_ELONGATION_COMPLEX_WITH_FOUR_PHOSPHODIESTER_BOND_FORMED_'_(PDB_00588)
428 -GGGGGUAGCCCCCCCC
429 -.((.......))....
430 ->>__'REOVIRUS_POLYMERASE_LAMBDA3_ELONGATION_COMPLEX_WITH_ONE_PHOSPHODIESTER_BOND_FORMED_'_(PDB_00590)
431 -GCUUAGCUCC
432 -((...))...
433 ->>__'SACCHARIDE-RNA_RECOGNITION_IN_THE_NEOMYCIN_B_/_RNA_APTAMER_COMPLEX_'_(PDB_00603)
434 -GGACUGGGCGAGAAGUUUAGUCC
435 -((((((((((...))))))))))
436 ->>__'SOLUTION_STRUCTURE_OF_THE_BACTERIOPHAGE_PHI21_N_PEPTIDE-_BOXB_RNA_COMPLEX_'_(PDB_00617)
437 -GGUUCACCUCUAACCGGGUGAGCC
438 -((((((((((....))))))))))
439 ->>__'CRYSTAL_STRUCTURE_OF_L-GLUTAMINE_AND_AMPCPP_BOUND_TO_GLUTAMINE_AMINOACYL_TRNA_SYNTHETASE_'_(PDB_00620)
440 -GGGGUAUCGCCAAGCGGUAAGGCACCGGAUUCUGAUUCCGGCAUUCCGAGGUUCGAAUCCUCGUACCCCAGCCA
441 -((((((..((((.......))))(((((((.....)))))))....(((((.......))))))))))).....
442 ->>__'CRYSTAL_STRUCTURE_OF_L-GLUTAMATE_AND_AMPCPP_BOUND_TO_GLUTAMINE_AMINOACYL_TRNA_SYNTHETASE_'_(PDB_00621)
443 -GGGGUAUCGCCAAGCGGUAAGGCACCGGAUUCUGAUUCCGGCAUUCCGAGGUUCGAAUCCUCGUACCCCAGCCA
444 -((((((..((((.......)))).(((((((...))))))).....(((((.......))))))))))).....
445 ->>__'MODEL_FOR_THIOSTREPTON_ANTIBIOTIC_BINDING_TO_L11_SUBSTRATE_FROM_50S_RIBOSOMAL_RNA_'_(PDB_00627)
446 -GCUGGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAGUGCGUAACAGCUCACCAGC
447 -(((((((((..((((.......))))..)))........((((....)))).))))))
448 ->>__'CRYSTAL_STRUCTURE_OF_THE_TRNA_DOMAIN_OF_TRANSFER-MESSENGER_RNA_IN_COMPLEX_WITH_SMPB_'_(PDB_00637)
449 -GAUUCGACGGGGACUUCGGUCCUCGGACGCGGGUUCGAUUCCCGCUCGACGGGGACUUCGGUCCUCGGA
450 -......((((((((....))))))))..(((((.......)))))...((((((((....)))))))).
451 ->>__'CHEMICAL_TRAPPING_AND_CRYSTAL_STRUCTURE_OF_A_CATALYTIC_TRNA_GUANINE_TRANSGLYCOSYLASE_COVALENT_INTERMEDIATE_'_(PDB_00648)
452 -AGCACGGCUUAAACCGUGCAGCACGGCUUAAACCGUGCUUUU
453 -(((((((......)))))))((((((......))))))....
454 ->>__'CHEMICAL_TRAPPING_AND_CRYSTAL_STRUCTURE_OF_A_CATALYTIC_TRNA_GUANINE_TRANSGLYCOSYLASE_COVALENT_INTERMEDIATE_'_(PDB_00649)
455 -AGCACGGCUGUAAACCGUGCAGCACGGCUUAAACCGUGC
456 -(((((((.......)))))))((((((......))))))
457 ->>__'HIV-1_TAR_RNA/NEOMYCIN_B_COMPLEX_'_(PDB_00664)
458 -GCCAGAUUUGAGCCUGGGAGCUCUCUGGC
459 -((((((...((((......))))))))))
460 ->>__'BACTERIOPHAGE_LAMBDA_N-PROTEIN-NUTBOXB-RNA_COMPLEX_'_(PDB_00668)
461 -GCCCUGAAAAAGGGC
462 -((((((...))))))
463 ->>__'GLUTAMINYL-TRNA_SYNTHETASE_MUTANT_D235N_COMPLEXED_WITH_GLUTAMINE_TRANSFER_RNA_'_(PDB_00669)
464 -GGGGUAUCGCCAAGCGGUAAGGCACCGGAUUCUGAUUCCGGCAUUCCGAGGUUCGAAUCCUCGUACCCCAGCCA
465 -((((((..(((.........)))((((((((...))))))))....(((((.......))))))))))).....
466 ->>__'GLUTAMINYL-TRNA_SYNTHETASE_MUTANT_D235G_COMPLEXED_WITH_GLUTAMINE_TRANSFER_RNA_'_(PDB_00670)
467 -GGGGUAUCGCCAAGCGGUAAGGCACCGGAUUCUGAUUCCGGCAUUCCGAGGUUCGAAUCCUCGUACCCCAGCCA
468 -((((((..(((.........)))(((((((.....)))))))....(((((.......))))))))))).....
469 ->>__'GLUTAMINYL-TRNA_SYNTHETASE_MUTANT_I129T_COMPLEXED_WITH_GLUTAMINE_TRANSFER_RNA_'_(PDB_00671)
470 -GGGGUAUCGCCAAGCGGUAAGGCACCGGAUUCUGAUUCCGGCAUUCCGAGGUUCGAAUCCUCGUACCCCAGCCA
471 -((((((..(((.........)))((((((.......))))))....(((((.......))))))))))).....
472 ->>__'GLUTAMINYL-TRNA_SYNTHETASE_COMPLEXED_WITH_TRNA_AND_AN_AMINO_ACID_ANALOG_'_(PDB_00672)
473 -GGGGUAUCGCCAAGCGGUAAGGCACCGGAUUCUGAUUCCGGCAUUCCGAGGUUCGAAUCCUCGUACCCCAGCCA
474 -((((((..((((.......))))((((((((...))))))))....(((((.......))))))))))).....
475 ->>__'INSIGHTS_INTO_EDITING_FROM_AN_ILE-TRNA_SYNTHETASE_STRUCTURE_WITH_TRNA(ILE)_AND_MUPIROCIN_'_(PDB_00673)
476 -GGGCUUGUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCGGUGGUUCAAGUCCACUCAGGCCCAC
477 -(((((((..((((.........))))(((((((.....)))))))....(((((.......))))))))))))..
478 ->>__'INSIGHTS_INTO_EDITING_FROM_AN_ILE-TRNA_SYNTHETASE_STRUCTURE_WITH_TRNA(ILE)_AND_MUPIROCIN_'_(PDB_00674)
479 -GGGCUUGUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCGGUGGUUCAAGUCCACUCAGGCCCAC
480 -(((((((..((((.........))))(((((((.....)))))))....(((((.......))))))))))))..
481 ->>__'SOLUTION_STRUCTURE_OF_THE_COMPLEX_FORMED_BY_THE_TWO_N-_TERMINAL_RNA-BINDING_DOMAINS_OF_NUCLEOLIN_AND_A_PRE-RRNA_TARGET_'_(PDB_00691)
482 -GGAUGCCUCCCGAGUGCAUCC
483 -((((((.........))))))
484 ->>__'THE_STRUCTURE_OF_A_RIBOSOMAL_PROTEIN_S8/SPC_OPERON_MRNA_COMPLEX_'_(PDB_00702)
485 -GGACGAUGGCGAAACUGCAUGAGGCAAUUCAUGCAAGUCCCUCGUCCGGACGAUGGCGAAACUGCAUGAGGCAAUUCAUGCAAGUCCCUCGUCC
486 -((((((.((.((..((((((((......)))))).))))))))))))((((((.((.((..((((((((......)))))).))))))))))))
487 ->>__'AVERAGE_SOLUTION_STRUCTURE_OF_A_PSEUDO-5\'-SPLICE_SITE_FROM_THE_NEGATIVE_REGULATOR_OF_SPLICING_OF_ROUS_SARCOMA_VIRUS_'_(PDB_00705)
488 -GGGGAGUGGUUUGUAUCCUUCCC
489 -((((((.((......))))))))
490 ->>__'SOLUTION_STRUCTURE_OF_RESIDUES_907-929_FROM_ROUS_SARCOMA_VIRUS_'_(PDB_00706)
491 -GGGGAGUGGUUUGUAUCCUUCCC
492 -((((((.(((....)))))))))
493 ->>__'HEPATITIS_DELTA_VIRUS_GEMONIC_RIBOZYME_PRECURSOR,_WITH_MG2+_BOUND_'_(PDB_00714)
494 -UGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGUGAAUGGGAC
495 -.(((((((...[[[[[[(((.[[.....))))))))))]]...(((((..........)))))....]]]]]]
496 ->>__'CRYSTAL_STRUCTURE_OF_A_C75U_MUTANT_HEPATITIS_DELTA_VIRUS_RIBOZYME_PRECURSOR,_IN_CU2+_SOLUTION_'_(PDB_00715)
497 -UGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGUGAAUGGGAC
498 -.(((((((...[[[[[[(((.[[.....))))))))))]]...(((((..........)))))....]]]]]]
499 ->>__'CRYSTAL_STRUCTURE_OF_THE_HEPATITIS_DELTA_VIRUS_GEMONIC_RIBOZYME_PRECURSOR,_WITH_C75U_MUTAION,_IN_COBALT_HEXAMMINE_SOLUTION_'_(PDB_00716)
500 -AUGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGUGAAUGGGAC
501 -..(((((((...[[[[[[(((.[[.....))))))))))]]...(((((..........)))))....]]]]]]
502 ->>__'SOLUTION_STRUCTURE_OF_THE_S._CEREVISIAE_U6_INTRAMOLECULAR_STEM_LOOP_(ISL)_RNA_AT_PH_5.7_'_(PDB_00721)
503 -GGUUCCCCUGCAUAAGGAUGAACC
504 -((((((((((...))))).)))))
505 ->>__'HIGH_RESOLUTION_STRUCTURE_OF_A_PICORNAVIRAL_INTERNAL_CIS-_ACTING_REPLICATION_ELEMENT_'_(PDB_00727)
506 -GGUCAUCGUUGAGAAAACGAAACAGACGGUGGCC
507 -((..(((((................)))))..))
508 ->>__'NMR_STRUCTURE_OF_THE_VS_RIBOZYME_STEM-LOOP_V_RNA_IN_THE_ABSENCE_OF_MULTIVALENT_IONS._'_(PDB_00730)
509 -GCGAGUUGACUACUCGC
510 -((((((.....))))))
511 ->>__'SACCHARIDE-RNA_RECOGNITION_IN_AN_AMINOGLYCOSIDE_ANTIBIOTIC-_RNA_APTAMER_COMPLEX,_NMR,_7_STRUCTURES_'_(PDB_00737)
512 -GGCACGAGGUUUAGCUACACUCGUGCC
513 -(((((((((((....))).))))))))
514 ->>__'CRYSTAL_STRUCTURE_OF_CYSTEINYL-TRNA_SYNTHETASE_BINARY_COMPLEX_WITH_TRNACYS_'_(PDB_00742)
515 -GGCGCGUUAACAAAGCGGUUAUGUAGCGGAUUGCAAAUCCGUCUAGUCCGGUUCGACUCCGGAACGCGCCUCCA
516 -(((((((..(((.........))).((((((.....))))))....(((((.......))))))))))))....
517 ->>__'CRYSTAL_STRUCTURE_OF_A_COMPLEX_BETWEEN_WT_BACTERIOPHAGE_MS2_COAT_PROTEIN_AND_AN_F5_APTAMER_RNA_STEMLOOP_WITH_2AMINOPURINE_SUBSTITUTED_AT_THE-10_POSITION_'_(PDB_00743)
518 -CCGGGGGAUCACCACGGCGGGGGAUCACCACGG
519 -((((.((....))))))(((.((....))))).
520 ->>__'THE_STRUCTURE_OF_A_RIBOSOMAL_PROTEIN_L1-MRNA_COMPLEX_'_(PDB_00746)
521 -GGGAGUGAAGGAGGCUCGCGAACUCGCGAAGCCGAGAAACUUCACUCCCGGGAGUGAAGGAGGCUCGCGAACUCGCGAAGCCGAGAAACUUCACUCCC
522 -.(((((((((((((((((((....)))).)))))....))))))))))..(((((((((((((((((((....)))).)))))....)))))))))).
523 ->>__'GUANINE_RIBOSWITCH_BOUND_TO_HYPOXANTHINE_'_(PDB_00749)
524 -GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGUCC
525 -(((((((...(((((((.[[..[[)))))))........((((((]]...]]))))))..)))))))
526 ->>__'REOVIRUS_POLYMERASE_LAMBDA-3_LOCALIZED_BY_ELECTRON_CRYOMICROSCOPY_OF_VIRIONS_AT_7.6-A_RESOLUTION_'_(PDB_00753)
527 -GGGGGUAGCCCCCCCC
528 -.((.......))....
529 ->>__'U1A_MUTANT/RNA_COMPLEX_+_GLYCEROL_'_(PDB_00754)
530 -AAUCCAUUGCACGGAUUAAUCCAUUGCACUCCGGAUUUAAUCCAUUGCACGGAUU
531 -.((((.......)))).(((((..........)))))...(((.......)))..
532 ->>__'DESIGNED_HIV-1_TAR_BINDING_LIGAND_'_(PDB_00755)
533 -GGCAGAUCUGAGCCUGGGAGCUCUCUGCC
534 -((((((...((((......))))))))))
535 ->>__'NMR_STRUCTURE_OF_A_SYNTHETIC_SMALL_MOLECULE,_RBT203,_BOUND_TO_HIV-1_TAR_RNA_'_(PDB_00756)
536 -GGCAGAUCUGAGCCUGGGAGCUCUCUGCC
537 -((((((...((((......))))))))))
538 ->>__'NMR_STRUCTURE_OF_A_SYNTHETIC_SMALL_MOLECULE,_RBT158,_BOUND_TO_HIV-1_TAR_RNA_'_(PDB_00757)
539 -GGCAGAUCUGAGCCUGGGAGCUCUCUGCC
540 -((((((...((((......))))))))))
541 ->>__'THE_STRUCTURAL_BASIS_FOR_RNA_SPECIFICITY_AND_CA2_INHIBITION_OF_AN_RNA-DEPENDENT_RNA_POLYMERASE_PHI6P2_CA2+_INHIBITION_COMPLEX_'_(PDB_00759)
542 -UUCCUUCCUUCCGGGGGG
543 -..((..[[..{{))]]}}
544 ->>__'CRYSTAL_STRUCTURE_OF_THE_HEPATITIS_DELTA_VIRUS_GEMONIC_RIBOZYME_PRECURSOR,_WITH_C75U_MUTAION,_IN_EDTA_SOLUTION_'_(PDB_00760)
545 -UGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGUGAAUGGGAC
546 -.(((((((...[[[[[[(((.[[.....))))))))))]]...(((((..........)))))....]]]]]]
547 ->>__'CRYSTAL_STRUCTURE_OF_THE_HEPATITIS_DELTA_VIRUS_GEMONIC_RIBOZYME_PRECURSOR,_WITH_C75U_MUTAION,_AND_MN2+_BOUND_'_(PDB_00761)
548 -UGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGUGAAUGGGAC
549 -.(((((((...[[[[[[(((.[[.....))))))))))]]...(((((..........)))))....]]]]]]
550 ->>__'CRYSTAL_STRUCTURE_OF_THE_HEPATITIS_DELTA_VIRUS_GEMONIC_RIBOZYME_PRECURSOR,_WITH_C75U_MUTAION,_IN_BA2+_SOLUTION_'_(PDB_00762)
551 -UGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGUGAAUGGGAC
552 -.(((((((...[[[[[[(((.[[.....))))))))))]]...(((((..........)))))....]]]]]]
553 ->>__'CRYSTAL_STRUCTURE_OF_THE_HEPATITIS_DELTA_VIRUS_GEMONIC_RIBOZYME_PRECURSOR,_WITH_C75U_MUTAION,_IN_IMIDAZOLE_AND_SR2+_SOLUTION_'_(PDB_00763)
554 -UGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGUGAAUGGGAC
555 -.(((((((...[[[[[[(((.[[.....))))))))))]]...(((((..........)))))....]]]]]]
556 ->>__'CRYSTAL_STRUCTURE_OF_THE_WILD_TYPE_HEPATITIS_DELTA_VIRUS_GEMONIC_RIBOZYME_PRECURSOR,_IN_EDTA_SOLUTION_'_(PDB_00764)
557 -GGCCGGCAUGGUCCCAGCCUCCUCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGCGAAUGGGAC
558 -(((((((....[[[[[(((.[[...))))))))))]]...(((((..........)))))....]]]]].
559 ->>__'CRYSTAL_STRUCTURE_OF_THE_HEPATITIS_DELTA_VIRUS_GEMONIC_RIBOZYME_PRODUCT_WITH_C75U_MUTAION,_CLEAVED_IN_IMIDAZOLE_AND_MG2+_SOLUTIONS_'_(PDB_00765)
560 -GGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGUGAAUGGGAC
561 -(((((((...[[[[[[(((.[[.....))))))))))]]...(((((..........)))))....]]]]]]
562 ->>__'CRYSTAL_STRUCTURE_OF_THE_HEPATITIS_DELTA_VIRUS_GEMONIC_RIBOZYME_PRECURSOR,_WITH_C75U_MUTAION,_IN_SR2+_SOLUTION_'_(PDB_00766)
563 -AUGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGUGAAUGGGAC
564 -..(((((((...[[[[[[(((.[[.....))))))))))]]...(((((..........)))))....]]]]]]
565 ->>__'CRYSTAL_STRUCTURE_OF_TRNA_NUCLEOTIDYLTRANSFERASE_COMPLEXED_WITH_A_PRIMER_TRNA_AND_AN_INCOMING_ATP_ANALOG_'_(PDB_00767)
566 -GGCCAGGGGCGGUUCGAUUCCGCCCCUGGCCGGCCAGGGGCGGUUCGAUUCCGCCCCUGGCCACCAA
567 -(((((((.(((.........))).)))))))(((((((.(((.........))).))))))).....
568 ->>__'SOLUTION_STRUCTURE_OF_AN_RNA_STEM-LOOP_DERIVED_FROM_THE_3\'_CONSERVED_REGION_OF_EEL_LINE_UNAL2_'_(PDB_00798)
569 -GGCUUUGGAUAAAAGCC
570 -(((((((...)))))))
571 ->>__'SOLUTION_STRUCTURE_OF_THE_EXTENDED_U6_ISL_AS_OBSERVED_IN_THE_U2/U6_COMPLEX_FROM_SACCHAROMYCES_CEREVISIAE_'_(PDB_00809)
572 -GAGCAGUUCCCCUGCAUAAGGAUGAACCGUUC
573 -((((((((((((((...))))).)))))))))
574 ->>__'THE_STRUCTURE_OF_A_RIGOROUSLY_CONSERVED_RNA_ELEMENT_WITHIN_THE_SARS_VIRUS_GENOME_'_(PDB_00810)
575 -GGAGUUCACCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAUU
576 -..((((((((...(((((((((...)))..)).))))..))))))))
577 ->>__'HIV-1_SUBTYPE_F_GENOMIC_RNA_DIMERIZATION_INITIATION_SITE_'_(PDB_00816)
578 -CUUGCUGAAGUGCACACAGCAAGCUUGCUGAAGUGCACACAGCAAG
579 -(((((((..[[[[[[.)))))))(((((((..]]]]]].)))))))
580 ->>__'HIV-1_SUBTYPE_B_GENOMIC_RNA_DIMERIZATION_INITIATION_SITE_'_(PDB_00817)
581 -CUUGCUGAAGCGCGCACGGCAAGCUUGCUGAAGCGCGCACGGCAAG
582 -(((((((..[[[[[[.)))))))(((((((..]]]]]].)))))))
583 ->>__'HIV-1_SUBTYPE_A_GENOMIC_RNA_DIMERIZATION_INITIATION_SITE_'_(PDB_00818)
584 -CUUGCUGAGGUGCACACAGCAAGCUUGCUGAGGUGCACACAGCAAG
585 -(((((((..[[[[[[.)))))))(((((((..]]]]]].)))))))
586 ->>__'SOLUTION_STRUCTURE_OF_AUCGCA_LOOP_'_(PDB_00825)
587 -GGAGAUCGCACUCCA
588 -(((((....))))).
589 ->>__'A-RIBOSWITCH-ADENINE_COMPLEX_'_(PDB_00828)
590 -CGCUUCAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUGAAGUG
591 -(((((((((...(((((((.[[[.[[)))))))........((((((]]..]]]))))))..)))))))))
592 ->>__'G-RIBOSWITCH-GUANINE_COMPLEX_'_(PDB_00829)
593 -GGAUCAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGGUC
594 -.(((((((...(((((((.[[..[[)))))))........((((((]]...]]))))))..)))))))
595 ->>__'HIV-1_DIS_RNA_SUBTYPE_F-_MN_SOAKED_'_(PDB_00831)
596 -CUUGCUGAAGUGCACACAGCAAGCUUGCUGAAGUGCACACAGCAAG
597 -(((((((..[[[[[[.)))))))(((((((..]]]]]].)))))))
598 ->>__'HIV-1_DIS_RNA_SUBTYPE_F-_MPD_FORM_'_(PDB_00832)
599 -CUUGCUGAAGUGCACACAGCAAGCUUGCUGAAGUGCACACAGCAAG
600 -(((((((..[[[[[[.)))))))(((((((..]]]]]].)))))))
601 ->>__'SOLUTION_STRUCTURE_OF_THE_SCYLV_P1-P2_FRAMESHIFTING_PSEUDOKNOT,_20_LOWEST_ENERGY_STRUCTURES_'_(PDB_00842)
602 -AGUGGCGCCGACCACUUAAAAACACCGG
603 -(((((..[[[.))))).........]]]
604 ->>__'SOLUTION_STRUCTURE_OF_THE_SCYLV_P1-P2_FRAMESHIFTING_PSEUDOKNOT,_REGULARIZED_AVERAGE_STRUCTURE_'_(PDB_00843)
605 -AGUGGCGCCGACCACUUAAAAACACCGG
606 -(((((..[[[.))))).........]]]
607 ->>__'NMR_STRUCTURE_OF_THE_APOB_MRNA_STEM-LOOP_AND_ITS_INTERACTION_WITH_THE_C_TO_U_EDITING_APOBEC1_COMPLEMENTARY_FACTOR_'_(PDB_00855)
608 -GGAUAUAUGAUACAAUUUGAUCAGUAUAUCC
609 -((((((.((((........))))..))))))
610 ->>__'SOLUTION_STRUCTURE_OF_THE_P2B-P3_PSEUDOKNOT_FROM_HUMAN_TELOMERASE_RNA_'_(PDB_00857)
611 -GGGCUGUUUUUCUCGCUGACUUUCAGCCCCAAACAAAAAAGUCAGCA
612 -[[[[[[........(((((((((]]]]]]........))))))))).
613 ->>__'SOLUTION_STRUCTURE_OF_THE_VS_RIBOZYME_STEM-LOOP_V_IN_THE_PRESENCE_OF_MGCL2_'_(PDB_00858)
614 -GCGAGUUGACUACUCGC
615 -((((((.....))))))
616 ->>__'SOLUTION_STRUCTURE_OF_THE_NEUROSPORA_VS_RIBOZYME_STEM-LOOP_V_IN_THE_PRESENCE_OF_MGCL2_WITH_MODELING_OF_BOUND_MANGANESE_IONS_'_(PDB_00859)
617 -GCGAGUUGACUACUCGC
618 -((((((.....))))))
619 ->>__'NMR_STRUCTURE_OF_THE_APOB_MRNA_STEM-LOOP_AND_ITS_INTERACTION_WITH_THE_C_TO_U_EDITING_APOBEC1_COMPLEMENTARY_FACTOR_'_(PDB_00860)
620 -GGAUAUAUGAUACAAUUUGAUCAGUAUAUCC
621 -(((((((((((........)))).)))))))
622 ->>__'NMR_STRUCTURE_OF_THE_APOB_MRNA_STEM-LOOP_AND_ITS_INTERACTION_WITH_THE_C_TO_U_EDITING_APOBEC1_COMPLEMENTARY_FACTOR_'_(PDB_00861)
623 -GGAUAUAUGAUAUAAUUUGAUCAGUAUAUCC
624 -((((((.((((........))))..))))))
625 ->>__'NMR_STRUCTURE_OF_THE_APOB_MRNA_STEM-LOOP_AND_ITS_INTERACTION_WITH_THE_C_TO_U_EDITING_APOBEC1_COMPLEMENTARY_FACTOR_'_(PDB_00862)
626 -GGAUAUAUGAUAUAAUUUGAUCAGUAUAUCC
627 -((((((.((((........))))..))))))
628 ->>__'SOLUTION_STRUCTURE_OF_THE_CENTRAL_REGION_OF_THE_HUMAN_GLUR-_B_R/G_PRE-MRNA_'_(PDB_00865)
629 -GGUAACAAUAUGCUAAAUGUUGUUACC
630 -((((((((((((...))))))))))))
631 ->>__'STRUCTURAL_BASIS_FOR_RECOGNITION_OF_UUUOH_3\'-TERMINII_OF_NASCENT_RNA_POL_III_TRANSCRIPTS_BY_LA_AUTOANTIGEN_'_(PDB_00867)
632 -UGCUGUUUUUGCUGUUUU
633 -.((.((....)).))...
634 ->>__'RO_AUTOANTIGEN_COMPLEXED_WITH_RNAS_'_(PDB_00868)
635 -GCUGGUCCGAUUGACUAGCCGCUGGUCCGAUUGACUAGCCUCCGAGGUCCGA
636 -(((((((.....))))))).(((((((.....))))))).............
637 ->>__'HIV-1_DIS_RNA_SUBTYPE_F-_ZN_SOAKED_'_(PDB_00869)
638 -CUUGCUGAAGUGCACACAGCAAGCUUGCUGAAGUGCACACAGCAAG
639 -(((((((..[[[[[[.)))))))(((((((..]]]]]].)))))))
640 ->>__'3\'-END_SPECIFIC_RECOGNITION_OF_HISTONE_MRNA_STEM-LOOP_BY_3\'-_EXONUCLEASE_'_(PDB_00883)
641 -GGCUCUUUUCAGAGCCGGCUCUUUUCAGAGCCAAAA
642 -((((((....))))))((((((....))))))....
643 ->>__'SOLUTION_STRUCTURE_OF_BIV_TAR_HAIRPIN_COMPLEXED_TO_JDV_TAT_ARGININE-RICH_MOTIF_'_(PDB_00884)
644 -GGCUCGUGUAGCUCAUUAGCUCCGAGCC
645 -.(((((...((((....)))).))))).
646 ->>__'HIV-1_DIS_RNA_SUBTYPE_F-_MONOCLINIC_FORM_'_(PDB_00886)
647 -CUUGCUGAAGUGCACACAGCAAGCUUGCUGAAGUGCACACAGCAAGCUUGCUGAAGUGCACACAGCAAGCUUGCUGAAGUGCACACAGCAAG
648 -(((((((..[[[[[[.)))))))(((((((..]]]]]].)))))))(((((((..[[[[[[.)))))))(((((((..]]]]]].)))))))
649 ->>__'MS2_COAT_PROTEIN/RNA_COMPLEX_'_(PDB_00887)
650 -UGAGGAUCACCCAUGAGGAUCACCCA
651 -((.((....))))((.((....))))
652 ->>__'RNA_BACTERIOPHAGE_MS2_COAT_PROTEIN/RNA_COMPLEX_'_(PDB_00888)
653 -AUGAGGAUUACCCAUGUGAGGAUUACCCA
654 -(((.((....))))).((.((....))))
655 ->>__'STRUCTURE_OF_BACTERIOPHAGE_COAT_PROTEIN-LOOP_RNA_COMPLEX_'_(PDB_00889)
656 -GGAUCACCGGAUCACC
657 -((....))((....))
658 ->>__'STRUCTURE_OF_BACTERIOPHAGE_COAT_PROTEIN-LOOP_RNA_COMPLEX_'_(PDB_00890)
659 -ACAUGAGGAUCACCCAUGUACAUGAGGAUCACCCAUGU
660 -(((((.((....)))))))(((((.((....)))))))
661 ->>__'CONFORMATIONAL_CHANGE_OF_PSEUDOURIDINE_55_SYNTHASE_UPON_ITS_ASSOCIATION_WITH_RNA_SUBSTRATE_'_(PDB_00891)
662 -GGCCACGGUUCGAAUCCGUGGCGGCCACGGUUCGAAUCCGUGGC
663 -((((((((.......))))))))(((((((.......)))))))
664 ->>__'STRUCTURAL_BASIS_FOR_RECOGNITION_OF_UUUOH_3\'-TERMINII_OF_NASCENT_RNA_POL_III_TRANSCRIPTS_BY_LA_AUTOANTIGEN_'_(PDB_00896)
665 -UGCUGUUUUUGCUGUUUU
666 -.((.((....)).))...
667 ->>__'GLUTAMINYL-TRNA_SYNTHETASE_COMPLEXED_TO_GLUTAMINE_AND_2\'DEOXY_A76_GLUTAMINE_TRNA_'_(PDB_00901)
668 -GGGGUAUCGCCAAGCGGUAAGGCACCGGAUUCUGAUUCCGGCAUUCCGAGGUUCGAAUCCUCGUACCCCAGCCA
669 -((((((..((((.......)))).(((((((...))))))).....(((((.......))))))))))).....
670 ->>__'COUPLING_OF_ACTIVE_SITE_MOTIONS_AND_RNA_BINDING_'_(PDB_00902)
671 -GGCAACGGUUCGAUCCCGUUGC
672 -.(((((((.......)))))))
673 ->>__'IF2,_IF1,_AND_TRNA_FITTED_TO_CRYO-EM_DATA_OF_E._COLI_70S_INITIATION_COMPLEX_'_(PDB_00903)
674 -GCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA
675 -(((((((..((((........))))((((((.......))))))....(((((.......))))))))))))....
676 ->>__'RNA_STEMLOOP_FROM_BACTERIOPHAGE_QBETA_COMPLEXED_WITH_AN_N87S_MUTANT_MS2_CAPSID_'_(PDB_00905)
677 -UGUCUAAGACAG
678 -((((...)))).
679 ->>__'CRYSTAL_STRUCTURE_OF_A_LUTEOVIRAL_RNA_PSEUDOKNOT_AND_MODEL_FOR_A_MINIMAL_RIBOSOMAL_FRAMESHIFTING_MOTIF_'_(PDB_00918)
680 -GCGGCACCGUCCGCUCAAACAAACGG
681 -((((..[[[.)))).........]]]
682 ->>__'TAR_RNA_RECOGNITION_BY_A_CYCLIC_PEPTIDOMIMETIC_OF_TAT_PROTEIN_'_(PDB_00921)
683 -GGCUCGUGUAGCUCAUUAGCUCCGAGCC
684 -((((((...((((....)))).))))))
685 ->>__'DISSECTING_THE_ROLES_OF_A_STRICTLY_CONSERVED_TYROSINE_IN_SUBSTRATE_RECOGNITION_AND_CATALYSIS_BY_PSEUDOURIDINE_55_SYNTHASE_'_(PDB_00923)
686 -CCACGGUUCGAAUCCGUGGC
687 -((((((.......)))))).
688 ->>__'STRUCTURE_OF_HUMAN_TRYPTOPHANYL-TRNA_SYNTHETASE_IN_COMPLEX_WITH_TRNA(TRP)_'_(PDB_00926)
689 -GACCUCGUGGCGCAAUGGUAGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCGAAUCACGUCGGGGUCA
690 -((.((((..(((((.....)))))...((((.....)))).......(((((.......))))))))).)).
691 ->>__'CRYSTAL_STRUCTURE_(I)_OF_NOVA-1_KH1/KH2_DOMAIN_TANDEM_WITH_25_NT_RNA_HAIRPIN_'_(PDB_00927)
692 -CGCGGAUCAGUCACCCAAGCGCG
693 -((((((.........))))))..
694 ->>__'CRYSTAL_STRUCTURE_(II)_OF_NOVA-1_KH1/KH2_DOMAIN_TANDEM_WITH_25NT_RNA_HAIRPIN_'_(PDB_00928)
695 -CUCGCGGAUCAGUCACCCAAGCGAG
696 -((((((((.........))))))))
697 ->>__'SOLUTION_STRUCTURE_OF_THE_C27A_SCYLV_P1-P2_FRAMESHIFTING_PSEUDOKNOT,_20_LOWEST_ENERGY_STRUCTURES_'_(PDB_00930)
698 -AGUGGCGCCGACCACUUAAAAACAACGG
699 -(((((..[[[.))))).........]]]
700 ->>__'SOLUTION_STRUCTURE_OF_THE_C27A_SCYLV_P1-P2_FRAMESHIFTING_PSEUDOKNOT,_AVERAGE_STRUCTURE_'_(PDB_00931)
701 -AGUGGCGCCGACCACUUAAAAACAACGG
702 -(((((..[[[.))))).........]]]
703 ->>__'RNA_STEMLOOP_OPERATOR_FROM_BACTERIOPHAGE_QBETA_COMPLEXED_WITH_AN_N87S,E89K_MUTANT_MS2_CAPSID_'_(PDB_00940)
704 -GUCUAAGACAAG
705 -(((...)))...
706 ->>__'RNA_STEMLOOP_FROM_BACTERIOPHAGE_MS2_COMPLEXED_WITH_AN_N87S,_E89K_MUTANT_MS2_CAPSID_'_(PDB_00941)
707 -AUGAGGAUUACCCAUGUGAGGAUUACCCAU
708 -(((.((....))))).((.((....)))).
709 ->>__'MS2_WILD-TYPE_RNA_STEMLOOP_COMPLEXED_WITH_AN_N87S_MUTANT_MS2_CAPSID_'_(PDB_00942)
710 -AUGAGGAUUACCCAUGAUGAGGAUUACCCAU
711 -(((.((....))))).(((.((....)))))
712 ->>__'CRYSTAL_STRUCTURE_OF_STAPHYLOCOCCUS_AUREUS_TRNA_ADENOSINE_DEAMINASE,_TADA,_IN_COMPLEX_WITH_RNA_'_(PDB_00943)
713 -UUGACUACGGAUCAAUUGACUACGGAUCAAGACUACGGUUUGACUACGGAUCAA
714 -(((((.....)))))(((((.....))))).........(((((.....)))))
715 ->>__'GUANINE_RIBOSWITCH_C74U_MUTANT_BOUND_TO_2,6-DIAMINOPURINE_'_(PDB_00944)
716 -GACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGAUUAUGUC
717 -((((((.....(((((.[[[.[[)))))..........((((((]]..]]]))))))..))))))
718 ->>__'COMPLETE_RNA_POLYMERASE_II-RNA_INHIBITOR_COMPLEX_'_(PDB_00945)
719 -CAGCACUGAUUGCGGUCGAGGUAGCUUGAUG
720 -.((((.....))))((((((....)))))).
721 ->>__'RNA_RECOGNITION_BY_THE_VTS1_SAM_DOMAIN_'_(PDB_00948)
722 -GGAGGCUCUGGCAGCUUUC
723 -(((((((.....)))))))
724 ->>__'STRUCTURE_OF_THE_SMAUG_RECOGNITION_RNA_ELEMENT_'_(PDB_00949)
725 -GGAGGCUCUGGCAGCUUUC
726 -(((((((.....)))))))
727 ->>__'STRUCTURE_OF_HIV-1(LAI)_GENOMIC_RNA_DIS_'_(PDB_00950)
728 -CUUGCUGAAGCGCGCACGGCAAGCUUGCUGAAGCGCGCACGGCAAG
729 -(((((((..[[[[[[.)))))))(((((((..]]]]]].)))))))
730 ->>__'STRUCTURE_OF_HIV-1(MAL)_GENOMIC_RNA_DIS_'_(PDB_00951)
731 -CUUGCUGAGGUGCACACAGCAAGCUUGCUGAGGUGCACACAGCAAG
732 -(((((((..[[[[[[.)))))))(((((((..]]]]]].)))))))
733 ->>__'CRYSTAL_STRUCTURE_OF_E._COLI_5-METHYLURIDINE_METHYLTRANSFERASE_RUMA_IN_COMPLEX_WITH_RIBOSOMAL_RNA_SUBSTRATE_AND_S-ADENOSYLHOMOCYSTEINE._'_(PDB_00961)
734 -AGCGAAAUUCCUUGUCGGGUAAGUUCCGACAGCGAAAUUCCUUGUCGGGUAAGUUCCGAC
735 -.............(((((.......))))).............(((((.......)))))
736 ->>__'MS2_(N87A_MUTANT)-_RNA_HAIRPIN_COMPLEX_'_(PDB_00963)
737 -AUGAGGAUUACCCAUUGAGGAUUACCCA
738 -(((.((....)))))((.((....))))
739 ->>__'MS2_(N87AE89K_MUTANT)-_RNA_HAIRPIN_COMPLEX_'_(PDB_00964)
740 -ACAUGAGGAUUACCCAUGUCAUGAGGAUUACCCAUG
741 -(((((.((....)))))))..((.........))..
742 ->>__'MS2_(N87AE89K_MUTANT)-_VARIANT_QBETA_RNA_HAIRPIN_COMPLEX_'_(PDB_00965)
743 -UGUCUAAGACUGGUCUAAGAC
744 -.(((...)))..(((...)))
745 ->>__'MS2_(N87AE89K_MUTANT)-_QBETA_RNA_HAIRPIN_COMPLEX_'_(PDB_00966)
746 -UGUCUAAGACAGUGUCUAAGACA
747 -.(((...)))..((((...))))
748 ->>__'MS2-RNA_HAIRPIN_(5BRU-5)_COMPLEX_'_(PDB_00968)
749 -CAUGAGGAUUACCCAUGCAUGAGGAUUACCCAUG
750 -((((.((....))))))((((.((....))))))
751 ->>__'MS2-RNA_HAIRPIN_(2ONE-5)_COMPLEX_VIRUS_'_(PDB_00970)
752 -CAUGAGGAUUACCCAUGCAUGAGGAUUACCCAUG
753 -((((.((....))))))..((.((....))))..
754 ->>__'MS2-RNA_HAIRPIN_(2THIOURACIL-5)_COMPLEX_'_(PDB_00971)
755 -CAUGAGGAUUACCCAUGUGAGGAUUACCCA
756 -((((.((....))))))((.((....))))
757 ->>__'MS2-RNA_HAIRPIN_(2SU-5-6)_COMPLEX_'_(PDB_00972)
758 -CAUGAGGAUUACCCAUGUGAGGAUUACCCA
759 -((((.........))))((.........))
760 ->>__'MS2-RNA_HAIRPIN_(A-5)_COMPLEX_'_(PDB_00973)
761 -AUGAGGAUAACCCAUGAGGAUAACCCA
762 -.((.((....))))((.((....))))
763 ->>__'MS2-RNA_HAIRPIN_(G-5)_COMPLEX_'_(PDB_00974)
764 -AUGAGGAUGACCCAUUGAGGAUGACCCA
765 -(((.((....)))))((.((....))))
766 ->>__'REFINEMENT_OF_P4_STEMLOOP_STRUCTURE_USING_RESIDUAL_DIPOLAR_COUPLING_DATA_'_(PDB_00975)
767 -GGAAGUCCGGUCUUCGGACCGGCUUCC
768 -.((((.(((((......))))))))).
769 ->>__'REFINEMENT_OF_RNASE_P_P4_STEMLOOP_STRUCTURE_USING_RESIDUAL_DIPOLAR_COUPLINGS-_COBALT(III)_HEXAMMINE_COMPLEX_STRUCTURE_'_(PDB_00977)
770 -GGAAGUCCGGUCUUCGGACCGGCUUCC
771 -(((((.(((((......))))))))))
772 ->>__'SOLUTION_RNA_STRUCTURE_OF_LOOP_REGION_OF_THE_HIV-1_DIMERIZATION_INITIATION_SITE_IN_THE_KISSING-LOOP_DIMER_'_(PDB_00988)
773 -GCUGAAGUGCACACGGCGCUGAAGUGCACACGGC
774 -((((..[[[[[[.))))((((..]]]]]].))))
775 ->>__'SOLUTION_RNA_STRUCTURE_MODEL_OF_THE_HIV-1_DIMERIZATION_INITIATION_SITE_IN_THE_KISSING-LOOP_DIMER_'_(PDB_00990)
776 -GGGUCGGCUUGCUGAAGUGCACACGGCAAGAGGCGACCCGGGUCGGCUUGCUGAAGUGCACACGGCAAGAGGCGACCC
777 -(((((((((((((((.[[[[[[)))))))))..))))))((((((((((((((..]]]]]].))))))))..))))))
778 ->>__'COCRYSTAL_STRUCTURE_OF_AN_RNA_SULFURATION_ENZYME_MNMA_AND_TRNA-GLU_IN_THE_PRE-REACTION_STATE_'_(PDB_00999)
779 -GUCCCCUUCGUCUAGAGGCCCAGGACACCGCCCUUUCACGGCGGUAACAGGGGUUCGAAUCCCCUAGGGG
780 -..((.....(((((.......)))))(((((((.....)))))))....((((.......))))...)).
781 ->>__'STRUCTURE_OF_HUMAN_TRYPTOPHANYL-TRNA_SYNTHETASE_IN_COMPLEX_WITH_TRNA(TRP)_'_(PDB_01002)
782 -GACCUCGUGGCGCAAUGGUAGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCGAAUCACGUCGGGGUCACCA
783 -(((((((....(((.....)))...((((((.....)))))).....(((((.......))))))))))))....
784 ->>__'COMPLEX_STRUCTURE_OF_CCA_ADDING_ENZYME_WITH_MINI-HELIX_LACKING_CCA_'_(PDB_01003)
785 -GGCCCGGGGCGGUUCGAUUCCGCCCUGGGCCA
786 -(((((((..(((.......)))..))))))).
787 ->>__'COMPLEX_STRUCTURE_OF_CCA-ADDING_ENZYME_WITH_TRNAMINIDC_'_(PDB_01004)
788 -GGCCCGGGGCGGUUCGAUUCCGCCCUGGGCCAC
789 -((((((((((((.......))))))))))))..
790 ->>__'COMPLEX_STRUCTURE_OF_CCA-ADDING_ENZYME_WITH_TRNAMINIDC_AND_CTP_'_(PDB_01005)
791 -GGCCCGGGGCGGUUCGAUUCCGCCCUGGGCCAC
792 -((((((((((((.......))))))))))))..
793 ->>__'COMPLEX_STRUCTURE_OF_CCA-ADDING_ENZYME_WITH_TRNAMINIDCC_'_(PDB_01006)
794 -GGCCCGGGGCGGUUCGAUUCCGCCCUGGGCCACC
795 -((((((((((((.......))))))))))))...
796 ->>__'COMPLEX_STRUCTURE_OF_CCA-ADDING_ENZYME_WITH_TRNAMINIDCC_AND_ATP_'_(PDB_01007)
797 -GGCCCGGGGCGGUUCGAUUCCGCCCUGGGCCACC
798 -((((((((((((.......))))))))))))...
799 ->>__'COMPLEX_STRUCTURE_OF_CCA-ADDING_ENZYME_WITH_TRNAMINICCA_'_(PDB_01008)
800 -GGCCCGGGGCGGUUCGAUUCCGCCCUGGGCCACCA
801 -((((((((((((.......))))))))))))....
802 ->>__'CRYSTAL_STRUCTURE_OF_ARCHAEOGLOBUS_FULGIDUS_O-PHOSPHOSERYL-_TRNA_SYNTHETASE_COMPLEXED_WITH_TRNACYS_AND_O-PHOSPHOSERINE_'_(PDB_01009)
803 -GCCAGGGUGGCAGAGGGGCUUUGCGGCGGACUGCAGAUCCGCUUUACCCCGGUUCGAAUCCGGGCCCUGGC
804 -((((((([[(((]].......)))..((((.......))))......(((((.......))))))))))))
805 ->>__'CRYSTAL_STRUCTURE_OF_ARCHAEOGLOBUS_FULGIDUS_O-PHOSPHOSERYL-_TRNA_SYNTHETASE_COMPLEXED_WITH_TRNACYS_'_(PDB_01010)
806 -GCCAGGGUGGCAGAGGGGCUUUGCGGCGGACUGCAGAUCCGCUUUACCCCGGUUCGAAUCCGGGCCCUGGC
807 -..((((([[(((]].......)))..(((((.....)))))......(((((.......))))))))))..
808 ->>__'CRYSTAL_STRUCTURE_OF_ARCHAEOGLOBUS_FULGIDUS_O-PHOSPHOSERYL-_TRNA_SYNTHETASE_E418N/E420N_MUTANT_COMPLEXED_WITH_TRNAOPAL_AND_O-PHOSPHOSERINE_("OPAL_COMPLEX")_'_(PDB_01011)
809 -GCCAGGGUGGCAGAGGGGCUUUGCGGCGGACUUCAGAUCCGCUUUACCCCGGUUCGAAUCCGGGCCCUGGC
810 -(((((((..(((.........))).(((((.......))))).....(((((.......))))))))))))
811 ->>__'CRYSTAL_STRUCTURE_OF_ARCHAEOGLOBUS_FULGIDUS_O-PHOSPHOSERYL-_TRNA_SYNTHETASE_E418N/E420N_MUTANT_COMPLEXED_WITH_TRNAAMBER_AND_O-PHOSPHOSERINE_("AMBER_COMPLEX")_'_(PDB_01012)
812 -GCCAGGGUGGCAGAGGGGCUUUGCGGCGGACUCUAGAUCCGCUUUACCCCGGUUCGAAUCCGGGCCCUGGC
813 -(((((((..(((.........))).(((((.......))))).....(((((.......))))))))))))
814 ->>__'COMPLEX_STRUCTURE_OF_CCA-ADDING_ENZYME,_MINI-DCC_AND_CTP_'_(PDB_01013)
815 -GGCCCGGGGCGGUUCGAUUCCGCCCUGGGCCACC
816 -((((((((((((.......))))))))))))...
817 ->>__'GUANINE_RIBOSWITCH_A21U,_U75A_MUTANT_BOUND_TO_HYPOXANTHINE_'_(PDB_01020)
818 -GGACAUUUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACAAUGUCCA
819 -.((((((...(((((((.[[..[[)))))))........((((((]]...]]))))))..))))))..
820 ->>__'GUANINE_RIBOSWITCH_A21G,_U75C_MUTANT_BOUND_TO_HYPOXANTHINE_'_(PDB_01021)
821 -GGACAUGUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACCAUGUCCA
822 -.((((((...(((((((.[[..[[)))))))........((((((]]...]]))))))..))))))..
823 ->>__'GUANINE_RIBOSWITCH_U22A,_A52U_MUTANT_BOUND_TO_HYPOXANTHINE_'_(PDB_01022)
824 -GGACAUAAAAUCGCGUGGAUAUGGCACGCAAGUUUCUUCCGGGCACCGUAAAUGUCCGACUAUGUCCA
825 -(((((((.....(((((.[[..[[)))))..........((((((]]...]]))))))..))))))).
826 ->>__'GUANINE_RIBOSWITCH_U22C,_A52G_MUTANT_BOUND_TO_HYPOXANTHINE_'_(PDB_01023)
827 -GGACAUACAAUCGCGUGGAUAUGGCACGCAAGUUUCUGCCGGGCACCGUAAAUGUCCGACUAUGUCCA
828 -(((((((...(((((((.[[..[[)))))))........((((((]]...]]))))))..))))))).
829 ->>__'GUANINE_RIBOSWITCH_U47C_MUTANT_BOUND_TO_HYPOXANTHINE_'_(PDB_01024)
830 -GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGCUUCUACCGGGCACCGUAAAUGUCCGACUAUGUCCA
831 -(((((((.....(((((.[[..[[)))))..........((((((]]...]]))))))..))))))).
832 ->>__'STRUCTURE_OF_THE_SRE_RNA_'_(PDB_01025)
833 -GGAGAGGCUCUGGCAGCUUUUCC
834 -(((((((((.....)))))))))
835 ->>__'STRUCTURE_OF_THE_SAM_DOMAIN_OF_VTS1P_IN_COMPLEX_WITH_RNA_'_(PDB_01026)
836 -GGAGAGGCUCUGGCAGCUUUUCC
837 -(((((((((.....)))))))))
838 ->>__'NMR_SOLUTION_OF_HIV-1_LAI_KISSING_COMPLEX_'_(PDB_01040)
839 -GGUUGCUGAAGCGCGCACGGCAACGGUUGCUGAAGCGCGCACGGCAAC
840 -.(((((((..[[[[[[.))))))).(((((((..]]]]]].)))))))
841 ->>__'SOLUTION_NMR_STRUCTURE_OF_DOMAIN_5_FROM_THE_PYAIELLA_LITTORALIS_(PL)_GROUP_II_INTRON_'_(PDB_01042)
842 -GAGCCGUGUGCGAUGAAAGUCGCAAGCACGGUUC
843 -((((((((.(((((....)))))...))))))))
844 ->>__'CRYSTAL_STRUCTURE_OF_AA-AGO_WITH_EXTERNALLY-BOUND_SIRNA_'_(PDB_01044)
845 -AGACAGCAUAUAUGCUGUCUUUAGACAGCAUAUAUGCUGUCUUU
846 -.((((((((((.((((((......)))))).))))))))))...
847 ->>__'HIV-1_DIS_KISSING-LOOP_IN_COMPLEX_WITH_NEAMINE_'_(PDB_01046)
848 -CUUGCUGAAGUGCACACAGCAAGCUUGCUGAAGUGCACACAGCAAG
849 -(((((((..[[[[[[.)))))))(((((((..]]]]]].)))))))
850 ->>__'HIV-1_DIS_KISSING-LOOP_IN_COMPLEX_WITH_NEOMYCIN_'_(PDB_01047)
851 -CUUGCUGAAGUGCACACAGCAAGCUUGCUGAAGUGCACACAGCAAG
852 -(((((((..[[[[[[.)))))))(((((((..]]]]]].)))))))
853 ->>__'HIV-1_DIS_KISSING-LOOP_IN_COMPLEX_WITH_RIBOSTAMYCIN_'_(PDB_01048)
854 -CUUGCUGAAGUGCACACAGCAAGCUUGCUGAAGUGCACACAGCAAGCUUGCUGAAGUGCACACAGCAAGCUUGCUGAAGUGCACACAGCAAG
855 -(((((((..[[[[[[.)))))))(((((((..]]]]]].)))))))(((((((..[[[[[[.)))))))(((((((..]]]]]].)))))))
856 ->>__'HIV-1_DIS_KISSING-LOOP_IN_COMPLEX_WITH_LIVIDOMYCIN_'_(PDB_01049)
857 -CUUGCUGAAGUGCACACAGCAAGCUUGCUGAAGUGCACACAGCAAG
858 -(((((((..[[[[[[.)))))))(((((((..]]]]]].)))))))
859 ->>__'SOLUTION_STRUCTURE_OF_A_CONSERVED_RNA_HAIRPIN_OF_EEL_LINE_UNAL2_'_(PDB_01050)
860 -GGUUGUACGUCGCUUUGGAUAAAAGCGUCUGCGACC
861 -((((((..(((((((.......))))))).))))))
862 ->>__'THE_STRUCTURE_OF_STEM_LOOP_IV_OF_TETRAHYMENA_TELOMERASE_RNA_'_(PDB_01051)
863 -GAGACUAUCGACAUUUGAUACACUAUUUAUCAAUGGAUGUCUC
864 -(((((......(((..(((((.....))))).)))...)))))
865 ->>__'CRYSTAL_STRUCTURE_OF_RNASE_Z/TRNA(THR)_COMPLEX_'_(PDB_01053)
866 -GCUUCCAUAGCUCAGCAGGUAGAGCGUCAGCGGUUCGAGCCCGCUUGGAAGCU
867 -(((((((..((((........))))...(((((.......)))))))))))).
868 ->>__'SOLUTION_STRUCTURE_OF_THE_HELIX_II_TEMPLATE_BOUNDARY_ELEMENT_FROM_TETRAHYMENA_TELOMERASE_RNA_'_(PDB_01056)
869 -GGCAGAUCUGUAAUAGAACUGCC
870 -(((((((((.....)))))))))
871 ->>__'A_DUAL_MODE_OF_RNA_RECOGNITION_BY_THE_RBMY_PROTEIN_'_(PDB_01057)
872 -GGACUGUCCACAAGACAGUCC
873 -((((((((.....))))))))
874 ->>__'SOLUTION_STRUCTURE_OF_THE_ANTICODON_LOOP_OF_S._POMBE_TRNAI_INCLUDING_THE_NATURALLY_OCCURRING_N6-THREONYL_ADENINE_'_(PDB_01058)
875 -ACGGGCUCAUAACCCGU
876 -(((((((...)))))))
877 ->>__'NMR_STRUCTURE_OF_THE_AQUIFEX_AEOLICUS_TMRNA_PSEUDOKNOT_PK1_'_(PDB_01059)
878 -GGGGUGGCUCCCCUAACAGCCG
879 -((((.[[[.)))).....]]].
880 ->>__'MODIFIED_PYRIMIDINES_SPECIFICALLY_BIND_THE_PURINE_RIBOSWITCH_'_(PDB_01066)
881 -GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGAUUAUGUCCU
882 -(((((((...(((((((.[[..[[)))))))........((((((]]...]]))))))..))))))).
883 ->>__'RNA_RECOGNITION_AND_CLEAVAGE_BY_AN_SPLICING_ENDONUCLEASE_'_(PDB_01074)
884 -GCGACCGACCAUAGCUGCUGCAGCGGUCAAAGGUCGCGCGACCGACCAUAGCUGCAUGCAGCGGUCAAAGGUCGC
885 -.(((((((((...((((...))))))))...))))).((((((((((...((........))))))...))))))
886 ->>__'TRANSLOCATION_OF_A_TRNA_WITH_AN_EXTENDED_ANTICODON_THROUGH_THE_RIBOSOME_'_(PDB_01084)
887 -GGCCAGACUCCCGAAUCUGGCC
888 -(((((((........)))))))
889 ->>__'SOLUTION_STRUCTURE_OF_A_PURINE_RICH_HEXALOOP_HAIRPIN_BELONGING_TO_PGY/MDR1_MRNA_AND_TARGETED_BY_ANTISENSE_OLIGONUCLEOTIDES_'_(PDB_01086)
890 -GAGGUCGGGAUGGAUCUC
891 -((((((......))))))
892 ->>__'SOLUTION_STRUCTURE_OF_THE_TETRAHYMENA_TELOMERASE_RNA_STEM_IV_TERMINAL_LOOP_'_(PDB_01097)
893 -GGCGAUACACUAUUUAUCGCC
894 -((((((((.....))))))))
895 ->>__'STRUCTURE_OF_THE_AAGU_TETRALOOP_'_(PDB_01108)
896 -GGCGUGAUCAAGUGAUCGCGCC
897 -(((((((((....)))))))))
898 ->>__'CRYSTAL_STRUCTURE_OF_AN_E._COLI_THI-BOX_RIBOSWITCH_BOUND_TO_THIAMINE_PYROPHOSPHATE,_MANGANESE_IONS_'_(PDB_01111)
899 -GCGACUCGGGGUGCCCUCGUGAAGGCUGAGAAAACCCGUAACCUGAUCUGGAUAAUGCCAGCGAGGGAAGUCGCA
900 -((((((((((((((((......))))......)))))).(((((((.((((......))))))))))))))))).
901 ->>__'CRYSTAL_STRUCTURE_OF_AN_E._COLI_THI-BOX_RIBOSWITCH_BOUND_TO_THIAMINE_PYROPHOSPHATE,_CALCIUM_IONS_'_(PDB_01112)
902 -GCGACUCGGGGUGCCCUGCGUGAAGGCUGAGAAAACCCGUAACCUGAUCUGGAUAAUCCAGCGAGGGAAGUCGCA
903 -((((((((((((((((.......))))......)))))).(((((((.((((.....))))))))))))))))).
904 ->>__'CRYSTAL_STRUCTURE_OF_AN_E._COLI_THI-BOX_RIBOSWITCH_BOUND_TO_THIAMINE_PYROPHOSPHATE,_BARIUM_IONS_'_(PDB_01113)
905 -GCGACUCGGGGUGCCCUCGUGAAGGCUGAGAAAACCCGUAACCUGAUCUGGAUAAUGCCAGCGAGGGAAGUCGCA
906 -((((((((((((((((......))))......)))))).(((((((.((((......))))))))))))))))).
907 ->>__'CRYSTAL_STRUCTURE_OF_AN_E._COLI_THI-BOX_RIBOSWITCH_BOUND_TO_THIAMINE_MONOPHOSPHATE_'_(PDB_01114)
908 -GCGACUCGGGGUGCCCUGCGUGAAGGCUGAGAAAACCCGUAACCUGAUCUGGAUAAUGCCAGCGAGGGAAGUCGCA
909 -((((((((((((((((.......))))......)))))).(((((((.((((......))))))))))))))))).
910 ->>__'CRYSTAL_STRUCTURE_OF_AN_E._COLI_THI-BOX_RIBOSWITCH_BOUND_TO_BENFOTIAMINE_'_(PDB_01115)
911 -GCGACUCGGGGUGCCCUGCAAGGCUGAGAAAACCCGUAUACCUGACUGGAUAAUGCCAGCGUAGGGAAGUCGCA
912 -((((((((((((((((....))))......))))))...((((((((((......)))))).)))).)))))).
913 ->>__'CRYSTAL_STRUCTURE_OF_AN_E._COLI_THI-BOX_RIBOSWITCH_BOUND_TO_PYRITHIAMINE_'_(PDB_01116)
914 -GCGACUCGGGGUGCCCGCGUAAGGCUGAGAAAACCCGUAACCUGAUGGAUAAUCCAGAGGGAAGUCGCA
915 -((((((((((((((((.....))))......)))))).(((((..............))))))))))).
916 ->>__'CRYSTAL_STRUCTURE_OF_AN_H/ACA_BOX_RNP_FROM_PYROCOCCUS_FURIOSUS_'_(PDB_01118)
917 -GGGUCCGCCUUGAUGCCCGGGUGAAAGCAUGAUCCCGGGUAAUAUGGCGGACCCACA
918 -(((((((((.....((((((((((......)))))))))).....)))))))))...
919 ->>__'CRYSTAL_STRUCTURE_OF_PSEUDOURIDINE_SYNTHASE_RLUA:_INDIRECT_SEQUENCE_READOUT_THROUGH_PROTEIN-INDUCED_RNA_STRUCTURE_'_(PDB_01126)
920 -GAGGGGAUGAAAAUCCCCUCGAGGGGAUGAAAAUCCCCUCGAGGGGAUGAAAAUCCCCUCGAGGGGAUGAAAUCCCCUC
921 -(((((((......)))))))(((((((......)))))))(((((((......)))))))(((((((.....)))))))
922 ->>__'CRYSTAL_STRUCTURE_OF_IRON_REGULATORY_PROTEIN_1_IN_COMPLEX_WITH_FERRITIN_H_IRE-RNA_'_(PDB_01130)
923 -GUUCUUGCUUCAACAGUGUUUGAACGGAACGUUCUUGCUUCAACAGUGUUUGAACGGAAC
924 -(((((...(((((......))))).)))))(((((...(((((......))))).)))))
925 ->>__'SOLUTION_STRUCTURE_OF_THE_APICAL_STEM-LOOP_OF_THE_HUMAN_HEPATITIS_B_VIRUS_ENCAPSIDATION_SIGNAL_'_(PDB_01133)
926 -GGCCUCCAAGCUGUGCCUUGGGUGGCC
927 -((((((((((......)))))).))))
928 ->>__'PHENYLALANYL-TRNA_SYNTHETASE_FROM_THERMUS_THERMOPHILUS_COMPLEXED_WITH_TRNA_AND_A_PHENYLALANYL-ADENYLATE_ANALOG_'_(PDB_01134)
929 -GCCGAGGUAGCUCAGUUGGUAGAGCAUGCGACUGAAAAUCGCAGUGUCCGCGGUUCGAUUCCGCGCCUCGGCACCA
930 -(((((((....((........))...((((((.....)))))).....((((.........)))))))))))....
931 ->>__'MS2-RNA_HAIRPIN_(C-7)_COMPLEX_'_(PDB_01135)
932 -AUGAGGCUCACCCAUGUGAGGCUCACCCA
933 -(((.((....))))).((.((....))))
934 ->>__'MS2-RNA_HAIRPIN_(4ONE-5)_COMPLEX_'_(PDB_01136)
935 -AUGAGGAUUACCCAUAUGAGGAUUACCCAU
936 -.((.((....))))..((.((....)))).
937 ->>__'MS2-RNA_HAIRPIN_(C-10)_COMPLEX_'_(PDB_01137)
938 -UGCGGAUCACCCAUGCGGAUCACCCA
939 -((.((....))))((.((....))))
940 ->>__'MS2-RNA_HAIRPIN_(G-10)_COMPLEX_'_(PDB_01138)
941 -AUCGCGAUUACGGAUCGCGAUUACGG
942 -(((.((....)))))..((....)).
943 ->>__'STRUCTURAL_BASIS_OF_RSMA/CSRA_RNA_RECOGNITION:_STRUCTURE_OF_RSME_BOUND_TO_THE_SHINE-DALGARNO_SEQUENCE_OF_HCNA_MRNA_'_(PDB_01145)
944 -GGGCUUCACGGAUGAAGCCCGGGCUUCACGGAUGAAGCCC
945 -(((((((......)))))))(((((((......)))))))
946 ->>__'MODEL_FOR_THIOSTREPTON_BINDING_TO_THE_RIBOSOMAL_L11-RNA_'_(PDB_01146)
947 -GCUGGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAGUGCGUAACAGCUCACCAGC
948 -((((((.((..(((.........)))..)).........(((......))).))))))
949 ->>__'NMR_SOLUTION_STRUCTURE_OF_THE_ANTICODON_OF_E.COLI_TRNA-VAL3_WITH_NO_MODIFICATIONS_'_(PDB_01147)
950 -CCUCCCUUACAAGGAGG
951 -((((((.....))))))
952 ->>__'NMR_SOLUTION_STRUCTURE_OF_THE_ANTICODON_OF_E._COLI_TRNA-_VAL3_WITH_2_MODIFICATIONS_(CMO5U34_M6A37)_'_(PDB_01148)
953 -CCUCCCUUACAAGGAGG
954 -(((((.......)))))
955 ->>__'NMR_SOLUTION_STRUCTURE_OF_THE_ANTICODON_OF_E._COLI_TRNA-_VAL3_WITH_1_MODIFICATION_(CMO5U34)_'_(PDB_01149)
956 -CCUCCCUUACAAGGAGG
957 -((((((.....))))))
958 ->>__'NMR_SOLUTION_STRUCTURE_OF_THE_ANTICODON_OF_E.COLI_TRNA-VAL3_WITH_1_MODIFICATION_(M6A37)_'_(PDB_01151)
959 -CCUCCCUUACAAGGAGG
960 -((((((.....))))))
961 ->>__'SOLUTION_STRUCTURE_OF_THE_FRAMESHIFT-INDUCING_RNA_STEM-LOOP_IN_SIV_'_(PDB_01152)
962 -GGAUGGGGAAAGAAGCCCCGCAAUUUCCCCAUCC
963 -((((((((((((..((...)).))))))))))))
964 ->>__'CRYSTAL_STRUCTURE_OF_RNASE_III_FROM_AQUIFEX_AEOLICUS_COMPLEXED_WITH_DS-RNA_AT_1.7-ANGSTROM_RESOLUTION_'_(PDB_01165)
965 -AAGGUCAUUCGAGUGGCCUUGCAAGGUCAUUCGAGUGGCCUUGC
966 -((((((((([[)))))))))..(((((((((]])))))))))..
967 ->>__'SOLUTION_STRUCTURE_OF_U2_SNRNA_STEM_I_FROM_S._CEREVISIAE_'_(PDB_01168)
968 -GGUUUGCCUUUUGGCUUACC
969 -((((((((....))))))))
970 ->>__'HEPATITIS_DELTA_VIRUS_GEMONIC_RIBOZYME_PRECURSOR_WITH_C75U_MUTATION_AND_BOUND_TO_MONOVALENT_CATION_TL+_'_(PDB_01185)
971 -UGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGUGAAUGGGAC
972 -.(((((((...[[[[[[(((.[[.....))))))))))]]...(((((..........)))))....]]]]]]
973 ->>__'HEPATITIS_DELTA_VIRUS_RIBOZYME_PRECURSOR_STRUCTURE,_WITH_C75U_MUTATION,_BOUND_TO_TL+_AND_COBALT_HEXAMMINE_(CO(NH3)_63+)_'_(PDB_01190)
974 -UGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGUGAAUGGGAC
975 -..((((((...[[[[[[(((.[[.....))))))))).]]...(((((..........)))))....]]]]]]
976 ->>__'NMR_STRUCTURE_OF_A_KISSING_COMPLEX_FORMED_BETWEEN_THE_TAR_RNA_ELEMENT_OF_HIV-1_AND_A_LNA/RNA_APTAMER_'_(PDB_01194)
977 -GGAGCCUGGGAGCUCCCACGGUCCCAGACGUG
978 -((((([[[[[.)))))(((((.]]]]])))))
979 ->>__'STRUCTURE_OF_A_HUMAN_PRP31-15.5K-U4_SNRNA_COMPLEX_'_(PDB_01199)
980 -AUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAU
981 -(((((.(((...((((.....))))))))))))(((((.(((...((((.....))))))))))))
982 ->>__'SOLUTION_STRUCTURE_OF_AN_RRNA_SUBSTRATE_BOUND_TO_THE_PSEUDOURIDYLATION_POCKET_OF_A_BOX_H/ACA_SNORNA_'_(PDB_01202)
983 -GGACCCGCCACUGCAGAGAUGCAAUCCAGUGGUCC
984 -(((((......((((....)))).......)))))
985 ->>__'STRUCTURE_OF_THE_MRNA_BINDING_FRAGMENT_OF_ELONGATION_FACTOR_SELB_IN_COMPLEX_WITH_SECIS_RNA._'_(PDB_01205)
986 -GGCGUUGCCGGUCUGGCAACGCCGGCGUUGCCGGUCUGGCAACGCC
987 -(((((((((.....)))))))))(((((((((.....)))))))))
988 ->>__'NMR_STRUCTURE_OF_A_KISSING_COMPLEX_FORMED_BETWEEN_THE_TAR_RNA_ELEMENT_OF_HIV-1_AND_A_LNA_MODIFIED_APTAMER_'_(PDB_01206)
989 -GGAGCCUGGGAGCUCCCACGGUCCCAGACGUG
990 -((((([[[[[[)))))(((((]]]]]])))))
991 ->>__'SOLUTION_STRUCTURE_OF_THE_CR7_TERMINAL_HAIRPIN_LOOP_FROM_HUMAN_TELOMERASE_RNA_'_(PDB_01237)
992 -GGAGUGCCUGAGCUGUGGCACUCC
993 -((((((((........))))))))
994 ->>__'SOLUTION_STRUCTURE_OF_THE_U64_H/ACA_SNORNA_3\'_TERMINAL_HAIRPIN_LOOP_'_(PDB_01238)
995 -GGAGUGCCUUACUGUGGCACUCC
996 -((((((((.......))))))))
997 ->>__'SOLUTION_STRUCTURE_OF_THE_U85_C/D-H/ACA_SCARNA_5\'_TERMINAL_HAIRPIN_LOOP_'_(PDB_01239)
998 -GGCACAGAGUUAUGUGCC
999 -(((((((....)))))))
1000 ->>__'GLUTAMINYL-TRNA_SYNTHETASE_MUTANT_C229R_WITH_BOUND_ANALOG_5\'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE_'_(PDB_01258)
1001 -GGGGUAUCGCCAAGCGGUAAGGCACCGGAUUCUGAUUCCGGCAUUCCGAGGUUCGAAUCCUCGUACCCCAGCCA
1002 -((((((..((((.......)))).(((((((...))))))).....(((((.......))))))))))).....
1003 ->>__'GLUTAMINYL-TRNA_SYNTHETASE_MUTANT_C229R_WITH_BOUND_ANALOG_5\'-O-[N-(L-GLUTAMYL)-SULFAMOYL]ADENOSINE_'_(PDB_01259)
1004 -GGGGUAUCGCCAAGCGGUAAGGCACCGGAUUCUGAUUCCGGCAUUCCGAGGUUCGAAUCCUCGUACCCCAGCCA
1005 -((((((..((((.......))))((((((((...))))))))....(((((.......))))))))))).....
1006 ->>__'SOLUTION_STRUCTURE_OF_THE_TOBRAMYCIN-RNA_APTAMER_COMPLEX,_NMR,_13_STRUCTURES_'_(PDB_01262)
1007 -ACUUGGUUUAGGUAAUGAGU
1008 -((((((((....))))))))
1009 ->>__'C-TERMINAL_DOMAIN(WH2-WH4)_OF_ELONGATION_FACTOR_SELB_IN_COMPLEX_WITH_SECIS_RNA_'_(PDB_01270)
1010 -GGCGUUGCCGGUCUGGCAACGCCGGCGUUGCCGGUCUGGCAACGCC
1011 -(((((((((.....)))))))))(((((((((.....)))))))))
1012 ->>__'CRYSTAL_STRUCTURE_OF_AN_ESCHERICHIA_COLI_TRNAGLY_MICROHELIX_AT_2.0_ANGSTROM_RESOLUTION_'_(PDB_01281)
1013 -GCGGGAAGCGGGAAUUCCCGCUUCCCGC
1014 -((((((([[[[[[[)))))))]]]]]]]
1015 ->>__'CRYSTAL_STRUCTURE_OF_DOMAIN_III_OF_THE_CRICKET_PARALYSIS_VIRUS_IRES_RNA_'_(PDB_01299)
1016 -GGUUAUUCAGAUUAGGUAGUCGAAUGACCUAAGAAAUUUACCU
1017 -((((((((.((..[[[[[.)))))))))).........]]]]]
1018 ->>__'5\'-R(*GP*AP*UP*CP*AP*CP*UP*UP*CP*GP*GP*U)-3\'_'_(PDB_01313)
1019 -GAUCACUUCGGUGAUCACUUCGGU
1020 -....((((((((....))))))))
1021 ->>__'SOLUTION_STRUCTURE_OF_HIV-1_REV_PEPTIDE-RNA_APTAMER_COMPLEX_'_(PDB_01332)
1022 -GGUGUCUUGGAGUGCUGAUCGGACACC
1023 -(((((((..((.......)))))))))
1024 ->>__'MS2_PROTEIN_CAPSID/RNA_COMPLEX_'_(PDB_01337)
1025 -CCGGAGGAUCACCACGGGCGGAGGAUCACCACGG
1026 -((((.((....)))))).(((.((....))))).
1027 ->>__'F6_APTAMER_MS2_COAT_PROTEIN_COMPLEX_'_(PDB_01338)
1028 -CCACAGUCACUGGGCAGUCACUGG
1029 -((.(((...)))))(((...))).
1030 ->>__'MS2_PROTEIN_CAPSID/RNA_COMPLEX_'_(PDB_01340)
1031 -UCGCCAACAGGCGGGCCAACAGGCG
1032 -(((((....)))))(((....))).
1033 ->>_PKB1:_Bovine_Leukemia_Virus_(BLV)
1034 -AAAAAACUAAUAGAGGGGGGACUUAGCGCCCCCCAAACCGUAACCCC
1035 -..............[[[[[[.....(((]]]]]]....)))......
1036 ->>_PKB2:_Beet_Western-Yellows_Virus_(BWYV)
1037 -GGGAAACGGAGUGCGCGGCACCGUCCGCGGAACAAACGGAGAAGGCAGCU
1038 -.............[[[[[..((((]]]]]......))))...........
1039 ->>_PKB3:_Equine_Infectious_Anemic_Virus_(EIAV)
1040 -AAAAAACGGGAAGCAAGGGGCUCAAGGGAGGCCCCAGAAACAAACUUUCCCGAU
1041 -................[[[[[[...((((]]]]]]............))))...
1042 ->>_PKB4:_Feline_Immunodeficiency_Virus_(FIV)
1043 -GGGAAACUGGAAGGCGGGGCGAGCUGCAGCCCCAGUGAAUCAAAUGCAGC
1044 -...............[[[[[..((((((]]]]]...........))))))
1045 ->>_PKB5:_turnip_yellow_mosaic_virus_(TYMV)
1046 -CGGGUGCAACUCCCGCCCCUCUUCCGAGGGUCAUCGGAACC
1047 -...............(((....[[[[[)))...]]]]]...
1048 ->>_PKB6:_kennedya_yellow_mosaic_virus_(KYMV-BP)
1049 -GGGGUGCAACUCCCCCGUCUAUCCUGGACGUCACCAGGACCA
1050 -...............(((...[[[[[[)))...]]]]]]...
1051 ->>_PKB7:_cacao_yellow_mosaic_virus_(CaYMV)
1052 -GGUGGUGCAACUCCCCCGUCCUCCCGAACGUCAUCGGGACCA
1053 -................(((..[[[[[[)))...]]]]]]...
1054 ->>_PKB8:_physalis_mottle_virus_(PhyMV)
1055 -UGGGUGCAACUCCCCCCCCUUCCGUGGGUAACGGAAACCA
1056 -..............(((..[[[[[[)))..]]]]]]....
1057 ->>_PKB9:_desmodium_yellow_mottle_virus_(DYMV)
1058 -GGGGUGCAACUCCCCCGUCUAUCCUGGACGUCACCAGGACCA
1059 -...............(((...[[[[[[)))...]]]]]]...
1060 ->>_PKB10:_ononis_yellow_mosaic_virus_(OYMV)
1061 -UGGGUUCAACUCCCCCCCUUUUCCGAGGGUAUCGGAAACC
1062 -..............(((...[[[[[[)))..]]]]]]...
1063 ->>_PKB11:_clitoria_yellow_vein_virus_(CYVV)
1064 -UGGGUGCAACCCCCCCGUCCAUCUCGAACGUCAUCGAGACCA
1065 -...............(((...[[[[[[)))...]]]]]]...
1066 ->>_PKB12:_wild_cucumber_mosaic_virus_(WCMV)
1067 -CGGGUGCAACCCCCCCUCCCCCCGUAGGUUAACGGGACCA
1068 -..............(((...[[[[[)))...]]]]]....
1069 ->>_PKB13:_calopogonium_yellow_vein_virus_(CaYVV)
1070 -GGGGUGCGACUCCCCCGUCUAUCCUGAACGUCAUCAGGACCA
1071 -...............(((...[[[[[[)))...]]]]]]...
1072 ->>_PKB14:_andean_potato_latent_virus_(APLV)
1073 -CGGGUGCGACUCCCCCCCCUCCUGUGGGCUACAGGAACCA
1074 -..............(((..[[[[[[)))..]]]]]]....
1075 ->>_PKB15:_eggplant_mosaic_virus_(EMV)
1076 -UGGGUGCGACUCCCCCCCCUCCCGUGGGUCAACGGGAACCA
1077 -..............(((..[[[[[[)))...]]]]]]....
1078 ->>_PKB16:_okra_mosaic_virus_(OMV)
1079 -GGGGUGCAACUCCCCCGCCCAUCUCGAGCGUCAUCGAGACCA
1080 -...............(((...[[[[[[)))...]]]]]]...
1081 ->>_PKB17:_tobacco_mosaic_virus_(CcTMV)
1082 -GGGGAGCAUUACCCCCCCAAAACCCUGGGGAUACAGGGCCCA
1083 -...............(((....[[[[[)))...]]]]]....
1084 ->>_PKB18:_tobacco_mosaic_virus_(TMV)
1085 -GGGGUUCGAAUCCCCCCGUUACCCCCGGUAGGGGCCCA
1086 -...............(((...[[[[)))..]]]]....
1087 ->>_PKB19:_pepper_mild_mottle_virus_(PMMV-I)
1088 -GGGGUUCGAAUCCCCCCCGAACCGCGGGUAGCGGCCCA
1089 -...............(((...[[[[)))..]]]]....
1090 ->>_PKB20:_cucumber_green_mottle_mosaic_virus_(CGMMV)
1091 -GGGGUUCGAAUCCCCCCUUUUCCCCGGGUAGGGGCCCA
1092 -...............(((...[[[[)))..]]]]....
1093 ->>_PKB21:_tobacco_mosaic_virus_(TMV-L)
1094 -GGGAUUCGAAUUCCCCCGGAACCCCCGGUUGGGGCCCA
1095 -...............(((...[[[[)))..]]]]....
1096 ->>_PKB22:_satellite_tobacco_mosaic_virus_(STMV)
1097 -GGGGUUCGAAUCCCUCCCUAACCGCGGGUAAGCGGCCCA
1098 -...............(((...[[[[)))...]]]]....
1099 ->>_PKB23:_tobacco_mild_green_mosaic_virus_(TMGMV)
1100 -GAGGUUCGAAUCCUCCCGUAACCGCCGGUAGCGGCCCA
1101 -...............(((...[[[[)))..]]]]....
1102 ->>_PKB24:_paprika_mild_mottle_virus_(PaMMV)
1103 -GGGGUUCGAAUCCCCCCUUUACCCCGGGUAUGGGGCCCA
1104 -...............(((...[[[[)))...]]]]....
1105 ->>_PKB25:_turnip_vein-clearing_virus_(TVCV)
1106 -GAGGUUCGAAUCCUCCCUAACCCCGGGUAGGGGCCCA
1107 -...............(((..[[[[)))..]]]]....
1108 ->>_PKB26:_oilseed_rape_mosaic_virus_(ORMV)
1109 -GAGGUUCGAAUCCUCCCUAACCCCGGGUAGGGGCCCA
1110 -...............(((..[[[[)))..]]]]....
1111 ->>_PKB27:_pepper_mild_mottle_virus_(PMMV-S)
1112 -GGGGUUCGAAUCCCCCCCGAACCGCGGGUAGCGGCCCA
1113 -...............(((...[[[[)))..]]]]....
1114 ->>_PKB28:_odontoglossum_ringspot_virus_(ORSV-S1)
1115 -GGGAUUCGAAUUCCCCCUUACCUCGGGUAGAGGCCCA
1116 -...............(((..[[[[)))..]]]]....
1117 ->>_PKB29:_tobacco_mosaic_virus_(TMVcg)
1118 -GAGGUUCGAAUCCUCCCUAACCCCGGGUAGGGGCCCA
1119 -...............(((..[[[[)))..]]]]....
1120 ->>_PKB30:_soil-borne_wheat_mosaic_virus_(SBWMV1)
1121 -GGGGUUCAAAUCCCCCCCGAACCGGAGGGUUAUCCGGCCCA
1122 -...............(((...[[[[[)))...]]]]]....
1123 ->>_PKB31:_soil-borne_wheat_mosaic_virus_(SBWMV2)
1124 -GGGGUUCAAUUCCCCCCCCAUCCGGAGGGUUAUCCGGCCC
1125 -...............(((...[[[[[)))...]]]]]...
1126 ->>_PKB32:_potato_mop-top_virus_(PMTV2)
1127 -GGGUGCAACUCCCCCCCCCUUGGAGGGUAUCCAAGACC
1128 -.............(((..[[[[[[)))..]]]]]]...
1129 ->>_PKB33:_peanut_clump_virus_(PCV1)
1130 -GGUGCAAAUCCCCCGCUGAAACGGAGCGAUAUCCGUCCCA
1131 -.............(((....[[[[[)))...]]]]]....
1132 ->>_PKB34:_peanut_clump_virus_(PCV2)
1133 -GGUGCAAAUCCCCCGCUGAAACGGAGCGAUAUCCGUCCCA
1134 -.............(((....[[[[[)))...]]]]]....
1135 ->>_PKB35:_Indian_peanut_clump_virus_(IPCV1)
1136 -GGUGCAAAUCCCCCGCCGAUACGGAGCGAUAUCCGUCCCA
1137 -.............(((....[[[[[)))...]]]]]....
1138 ->>_PKB36:_beet_soil-borne_virus_(BSBV1)
1139 -GGGGUGCAAAUCCCCCCCUUUACUUGAGGGAAAUCAAGCCC
1140 -...............(((....[[[[[)))...]]]]]...
1141 ->>_PKB37:_beet_soil-borne_virus_(BSBV2)
1142 -GGGGUGCAAAUCCCCCCCUUAACUUGAGGGAAAUCAAGCCC
1143 -...............(((....[[[[[)))...]]]]]...
1144 ->>_PKB38:_beet_soil-borne_virus_(BSBV3)
1145 -GGGGUGCAACUCCCCCCCUUAACUAGAGGGAAAUCUAGCCC
1146 -...............(((....[[[[[)))...]]]]]...
1147 ->>_PKB39:_beet_virus_Q_(BVQ1)
1148 -GGGGUGCAAAUCCCCCCCUAACUUGAGGGAAAUCAAGCCCC
1149 -...............(((...[[[[[)))...]]]]]....
1150 ->>_PKB40:_beet_virus_Q_(BVQ2)
1151 -GGGGUGCAAAUCCCCCCCUAACUUGAGGGAAAUCAAGCCC
1152 -...............(((...[[[[[)))...]]]]]...
1153 ->>_PKB41:_beet_virus_Q_(BVQ3)
1154 -GGGGUGCAAAUCCCCCCCUAACUUGAGGGAAAUCAAGCCCC
1155 -...............(((...[[[[[)))...]]]]]....
1156 ->>_PKB42:_potato_leafroll_virus_(PLRV-W)
1157 -UUUAAAUGGGCGAGCGGCACCGCCCGCCAAAACAAACGG
1158 -.............((((..[[[.)))).........]]]
1159 ->>_PKB43:_potato_leafroll_virus_(PLRV-S)
1160 -UUUAAAUGGGCAAGCGGCACCGUCCGCCAAAACAAACGG
1161 -.............((((..[[[[))))........]]]]
1162 ->>_PKB44:_cucurbit_aphid-borne_yellows_virus_(CABYV)
1163 -GGGAAACGGGCAGGCGGCGGCGACCGCCGAAACAACCGC
1164 -............(((((..[[[.)))))........]]]
1165 ->>_PKB45:_pea_enation_mosaic_virus_(PEMV)
1166 -GGGAAACGGAUUAUUCCGGUCGACUCCGGAGAAACAAAGUC
1167 -.............((((((..[[[[))))))......]]]]
1168 ->>_PKB46:_barley_yellow_dwarf_virus_(BYDV-NY-RPV)
1169 -GGGAAACGGGAAGGCGGCGGCGUCCGCCGUAACAAACGC
1170 -............(((((..[[[[))))).......]]]]
1171 ->>_PKB47:_Moloney_murine_leukemia_virus_(Mo-MuLV)
1172 -UAGGGAGGUCAGGGUCAGGAGCCCCCCCCUGAACCCAGGAUAACCCUCAAAGUCGGGGGGC
1173 -...........((((((((.[[[[[[[)))).))))..................]]]]]]]
1174 ->>_PKB48:_spleen_necrosis_virus_(SNV)
1175 -UAGGGCCGUCAGGGUUCUCCCGCCCUCCGUGAACCCAGGCUAAAAGUUAAGGUAGGGGGGC
1176 -...........((((((.(..[[[[[[[).))))))..................]]]]]]]
1177 ->>_PKB49:_E.coli_(Ec_PK1)
1178 -CGAGGGGCGGUUGGCCUCGUAAAAAGCCGC
1179 -(((((.[[[[[[..))))).....]]]]]]
1180 ->>_PKB50:_E.coli_(Ec_PK2)
1181 -CCUCUCUCCCUAGCCUCCGCUCUUAGGACGGGGAUCAAGAGAGGUCAAACCCAAAAGAG
1182 -(((((((((((..(((...[[[[[)))..))))....)))))))..........]]]]]
1183 ->>_PKB51:_E.coli_(Ec_PK3)
1184 -GCGUGGAAGCCCUGCCUGGGGUUGAAGCGUUAAAACUUAAUCAGGC
1185 -((((...(((((.[[[[[)))))...))))...........]]]]]
1186 ->>_PKB52:_E.coli_(Ec_PK4)
1187 -GUUUGUUAGUGGCGUGUCCGUCCGCAGCUGGCAAGCGAAUGUAAAGACUGAC
1188 -((((((((((.(((.[[[.[[[))).)))))))))).........]]].]]]
1189 ->>_PKB53:_tobacco_mosaic_virus_(TMV_UPD-PK1)
1190 -ACGGAUUGUGUCCGUAAUCACA
1191 -..(((.[[[[))).....]]]]
1192 ->>_PKB54:_tobacco_mosaic_virus_(TMV_UPD-PK2)
1193 -CGUGGUGCGUACGAUAACGCAU
1194 -(((.[[[[[[)))...]]]]]]
1195 ->>_PKB55:_tobacco_mosaic_virus_(TMV_UPD-PK3)
1196 -AGUGUUUUUCCCUCCACUUAAAUCGAAGGG
1197 -((((.....[[[[[))))......].]]]]
1198 ->>_PKB56:_odontoglossum_ringspot_virus_(ORSV-S1_UPD3-PK1)
1199 -UAACGUUGAUAGUGUUGAACUAUC
1200 -((((((.[[[[))))))...]]]]
1201 ->>_PKB57:_tobacco_mosaic_virus_(TMV_PKbulge)
1202 -UGUGUCUUGGAUCGCGCGGGUCAAAUGUAUAUGGUUCAUAUACAUCCGCAGGCACGUAAUAAAGCGA
1203 -(((((((....[[[[((((.....((((((((.....))))))))))))))))))).......]]]]
1204 ->>_PKB58:_odontoglossum_ringspot_virus_(ORSV-S1_UPD1-PK3)
1205 -AGUGUUUGUCCCUCCACUUAAAUCGAAGGG
1206 -((((.....[[[[[))))......].]]]]
1207 ->>_PKB59:_odontoglossum_ringspot_virus_(ORSV-S1_UPD1-PK2)
1208 -CGUGGUGCAUACGAUAAUGCAU
1209 -(((.[[[[[[)))...]]]]]]
1210 ->>_PKB60:_odontoglossum_ringspot_virus_(ORSV-S1_UPD2-PK3)
1211 -AGUGUUUAUCCCUCCACUUGAAUCGAAGGG
1212 -((((.....[[[[[))))......].]]]]
1213 ->>_PKB61:_odontoglossum_ringspot_virus_(ORSV-S1_UPD2-PK2)
1214 -CGUUGUGUACACGAUAGUACAU
1215 -(((.[[[[[[)))...]]]]]]
1216 ->>_PKB62:_odontoglossum_ringspot_virus_(ORSV-S1_UPD3-PK3)
1217 -AGUGGUUAUCCCUCCACUUAAAUCGAAGGG
1218 -((((.....[[[[[))))......].]]]]
1219 ->>_PKB63:_odontoglossum_ringspot_virus_(ORSV-S1_UPD3-PK2)
1220 -CGUGGUGCAUACGAUAAUGCAU
1221 -(((.[[[[[[)))...]]]]]]
1222 ->>_PKB65:_E.coli_(Ec_16S-PK505/526)
1223 -GCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGC
1224 -((((((((...[[[[[[[......))).......]]]]]]])))))
1225 ->>_PKB66:__(TPK-70.28)
1226 -CAAGAACCGGACGGGUGAGAACCGAGACAAACACCCACCA
1227 -.......(((..[[[[[....))).......]]]]]....
1228 ->>_PKB67:_Legionella_pneumophila_(Lp_PK1)
1229 -CGAGAAGGAGAUCUCUCGUAAAUAAGACUC
1230 -(((((..[[[.[[))))).......]]]]]
1231 ->>_PKB68:_Legionella_pneumophila_(Lp_PK2)
1232 -GUUAAACCAUCACUGUGUACUGGCCAAUAAACCCAGUAUCCCGUUCGACCGAGCCCGCUUAUCGGUAU
1233 -(((.(((....((((.[[[[[[[..........)))).....))).)))............]]]]]]]
1234 ->>_PKB69:_Legionella_pneumophila_(Lp_PK3)
1235 -CGGUCAUAAGAGAUAAGCUAGCGUCCUAAUCUAUCCCGGGUUAUGGCGCGAAACUCAGGGA
1236 -(((((((((........................[[[[[[[))))))).))...]]].]]]]
1237 ->>_PKB70:_Legionella_pneumophila_(Lp_PK4)
1238 -GCUGUGUAUCAUCCUGCCCGUCGGAGGAGCCACAGUUAAAUUCAAAAGACAAGGC
1239 -((((((..((.(((.[[[.[[[))).))..))))))...........]]]..]]]
1240 ->>_PKB72:_E.coli_(Ec_S15)
1241 -GGGAUCGCUGAAUUAGAGAUCGGCGUCCUUUCAUUCUAUAUACUUUGGAGUUUUAAAAUGUCUCUAA
1242 -((((.((((((.[[[[[[[))))))))))...............................]]]]]]]
1243 ->>_PKB73:_T2_bacteriophage_(T2_gene32)
1244 -CUGACCAGCUAUGAGGUCAUACAUCGUCAUAGC
1245 -.(((((.[[[[[[[))))).......]]]]]]]
1246 ->>_PKB74:_bacteriophage_T4_(T4_gene32)
1247 -UGCCAGCUAUGAGGUAAAGUGUCAUAGC
1248 -((((.[[[[[[[)))).....]]]]]]]
1249 ->>_PKB75:_hepatitis_delta_virus_("Italy"_variant)_(HDV-It_g)
1250 -UGGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACAUUCCGAGGGGACCGUCCCCUCGGUAAUGGCGAAUGGGACCCA
1251 -.(((((((..[[[[[[[{{{.[[.....}}})))))))]]....(((((((((((((...))))))))).)))).....]]]]]]]..
1252 ->>_PKB76:_hepatitis_delta_virus_("Italy"_variant)_(HDV-It_ag)
1253 -GGGUCGGCAUGGCAUCUCCACCUCCUCGCGGUCCGACCUGGGCAUCCGAAGGAGGACGCACGUCCACUCGGAUGGCUAAGGGAGAGCCA
1254 -(((((((........[[[[(((.......))))))))))...(((((((....((((....))))..)))))))......]]]].....
1255 ->>_PKB78:_AKV_murine_leukemia_virus_(AKV-MuLV)
1256 -UAGGGGGGUCAGGGUCAGGAGCCCCCCCCUGAACCCAGGAUAACCCUCACUGUCGGGGGGCA
1257 -...........((((((((.[[[[[[[)))).))))..................]]]]]]].
1258 ->>_PKB79:_gibbon_ape_leukemia_virus_(GaLV)
1259 -UAGGGGAGUCAGGGUUCGGACCCCCUCCCCGAACCUAGGGUAACACUGACUGUGGAGGGGA
1260 -...........((((((((..[[[[[[[)))))))).................]]]]]]].
1261 ->>_PKB80:_mouse_mammary_tumor_virus_(MMTV_gag/pro)
1262 -AAAAAACUUGUAAAGGGGCAGUCCCCUAGCCCCGCUCAAAAGGGGGAUG
1263 -..............(((((.[[[[[[[.)))))........]]]]]]].
1264 ->>_PKB81:__(oligo_PK5)
1265 -GCGAUUUCUGACCGCUUUUUUGUCAG
1266 -(((....[[[[[)))......]]]]]
1267 ->>_PKB82:_tobacco_mosaic_virus_(TMV-L_UPD-PK1)
1268 -AUAAAGUUUGUGUUUCUAAAACACAC
1269 -..(((...[[[[)))......]]]].
1270 ->>_PKB83:_tobacco_mosaic_virus_(TMV-L_UPD-PK2)
1271 -ACGUGGUACGUACGAUAACGUACA
1272 -.(((.[[[[[[)))...]]]]]].
1273 ->>_PKB84:_tobacco_mosaic_virus_(TMV-L_UPD-PK3)
1274 -CAGUGUUUUUCCCUCCACUUAAAUCGAAGGGU
1275 -.((((.....[[[[[))))......].]]]].
1276 ->>_PKB85:_tobacco_mosaic_virus_(CcTMV_UPD-PK1)
1277 -AAGUUUGGUCGUACUUAACGACCU
1278 -.(((..[[[[[[)))..]]]]]].
1279 ->>_PKB86:_tobacco_mosaic_virus_(CcTMV_UPD-PK2)
1280 -UAGGGGCUUACCGAAAUAAGCC
1281 -.(((.[[[[[)))...]]]]].
1282 ->>_PKB87:_tobacco_mosaic_virus_(CcTMV_UPD-PK3)
1283 -CCGUGUUUAAGAGUCCACGCAAAUCGAACUCU
1284 -.((((.....[[[[[))))......].]]]].
1285 ->>_PKB88:_Feline_leukemia_virus_(FeLV)
1286 -UAGGAGAGUCAGGGCCAGGACCCCCCCCCCUGAGCCCAGGAUAACCUUAAGAAUAGGGGGGC
1287 -...........((((((((...[[[[[[)))).))))..................]]]]]].
1288 ->>_PKB89:_cucumber_green_mottle_mosaic_virus_(CGMMV_UPD-PK1)
1289 -ACCUCGAAAGCUUAGUUUCGAGGGUCUUCUGAU
1290 -.((((((((..[[[[)))))))).....]]]].
1291 ->>_PKB90:_cucumber_green_mottle_mosaic_virus_(CGMMV_UPD-PK2)
1292 -UGGUGGUGCACACCAAAGUGCAUA
1293 -.(((.[[[[[[)))...]]]]]].
1294 ->>_PKB91:_cucumber_green_mottle_mosaic_virus_(CGMMV_UPD-PK3)
1295 -UAGUGCUUUCCCGUUCACUUAAAUCGAACGGUU
1296 -.((((.....[[[[[))))......].]]]]..
1297 ->>_PKB92:_tobacco_mild_green_mosaic_virus_(TMGMV_UPD-PK1)
1298 -AAAGUCGCUGAAGACUUAAAAUUCAGG
1299 -.(((((.[[[[[)))))....]]]]].
1300 ->>_PKB93:_tobacco_mild_green_mosaic_virus_(TMGMV_UPD-PK2)
1301 -GGGUGGCUGAUACCAAAAUCAGCA
1302 -.(((.[[[[[[)))...]]]]]].
1303 ->>_PKB94:_tobacco_mild_green_mosaic_virus_(TMGMV_UPD-PK3)
1304 -CAGUGGUUGUUCGUCCACUUAAAUAUAACGAUU
1305 -.((((.....[[[[.))))........]]]]..
1306 ->>_PKB95:_pepper_mild_mottle_virus_(PMMV-S_UPD-PK1)
1307 -AGUUGGACGAACAUUAAACGUCC
1308 -.(((.[[[[)))......]]]].
1309 ->>_PKB96:_pepper_mild_mottle_virus_(PMMV-S_UPD-PK2)
1310 -CCGUGGCGAGUACGAUAACUCGUA
1311 -.(((.[[[[[[)))...]]]]]].
1312 ->>_PKB97:_pepper_mild_mottle_virus_(PMMV-S_UPD-PK3)
1313 -UAGUGUUUUUCCCUCCACUUAAAUCGAAGGGU
1314 -.((((.....[[[[[))))......].]]]].
1315 ->>_PKB98:_baboon_endogenous_virus_(BaEV)
1316 -UAGGGGUGUCAGGGCUCUGGAGCCCCCCCCGAGCCCCGGCUAACUCUAUCUGUAGGGGGGCA
1317 -...........((((((.((.[[[[[[[))))))))..................]]]]]]].
1318 ->>_PKB99:_Cas-Br-E_murine_leukemia_virus_(Cas-Br-E-MuLV)
1319 -UAGGGGGGUCGGGGUCAGGAGCCCCCCCCUGAACCCAGGAUAACCCUCAAAGUCGGGGGGCAA
1320 -...........((((((((.[[[[[[[)))).))))..................]]]]]]]..
1321 ->>_PKB100:_satellite_tobacco_mosaic_virus_(STMV_UPD2-PK1)
1322 -AAGCCUUUUGGAUCGAAGGUUAAACGAUCCG
1323 -.((((((..[[[[[[))))))...]]]]]].
1324 ->>_PKB101:_satellite_tobacco_mosaic_virus_(STMV_UPD2-PK2)
1325 -CGCUCCUCGCUUGAGCUUGAGGCGGC
1326 -.((((.[[[[[[))))...]]]]]].
1327 ->>_PKB102:_satellite_tobacco_mosaic_virus_(STMV_UPD2-PK3)
1328 -GCGUAUCUCUUAUGUCAACAGAGA
1329 -.((((.[[[[)))).....]]]].
1330 ->>_PKB103:_satellite_tobacco_mosaic_virus_(STMV_UPD1-PK1)
1331 -CGCCGACGUGGCUGUAUAAUACGUC
1332 -.(((.[[[[)))........]]]].
1333 ->>_PKB104:_satellite_tobacco_mosaic_virus_(STMV_UPD1-PK2)
1334 -UCGUUGACAAGUACGAAAUCUUGUUA
1335 -.(((.[[[[[[.)))....]]]]]].
1336 ->>_PKB105:_satellite_tobacco_mosaic_virus_(STMV_UPD1-PK3)
1337 -UAGUGUUUUUCCCUCCACUUAAAUCGAAGGGU
1338 -.((((.....[[[[[))))......].]]]].
1339 ->>_PKB107:_simian_retrovirus-1_(SRV1_gag/pro)
1340 -GGGAAACGGACUGAGGGGCCAGCCCCAGGCCCCGAAACAAGCUUAUGGGGCG
1341 -..............((((((.[[[[[[))))))............]]]]]].
1342 ->>_PKB108:_Tetrahymena_thermophila_(T.the_telo)
1343 -UAUAACCUUCACCAAUUAGGUUCAAAUAAGUGGUA
1344 -...((((...[[[[[[[[))))....]]]]]]]].
1345 ->>_PKB109:_beet_virus_Q_(BVQ1_UPD-PKc)
1346 -UUGUGGUGCAUACAAUAAUGCAUA
1347 -.(((.[[[[[[)))...]]]]]].
1348 ->>_PKB110:_beet_virus_Q_(BVQ1_UPD-PKb)
1349 -UAGUGUUUGCCGUUCCACUUAAAUCGAAACGGA
1350 -.((((....[[[[[[))))......].]]]]].
1351 ->>_PKB111:_beet_virus_Q_(BVQ2_UPD-PKc)
1352 -ACGUGGUGCAUACGUUAAUGCAUA
1353 -.(((.[[[[[[)))...]]]]]].
1354 ->>_PKB112:_beet_virus_Q_(BVQ2_UPD-PKb)
1355 -UAGUGUUUUUCGUUCCACUUAAAUCGAAACGAU
1356 -.((((....[[[[[[))))......].]]]]].
1357 ->>_PKB113:_beet_virus_Q_(BVQ3_UPD-PKc)
1358 -UCGUGGUGCAUACGAAAAUGCAUA
1359 -.(((.[[[[[[)))...]]]]]].
1360 ->>_PKB114:_beet_virus_Q_(BVQ3_UPD-PKb)
1361 -UAGUGUUUACCGUUCCACUUAAAUCGAAACGGA
1362 -.((((....[[[[[[))))......].]]]]].
1363 ->>_PKB115:_beet_soil-borne_virus_(BSBV1_UPD-PKc)
1364 -CGGUAGCGCGAACCUUAUCGCGCA
1365 -.(((.[[[[[[)))...]]]]]].
1366 ->>_PKB116:_beet_soil-borne_virus_(BSBV1_UPD-PKb)
1367 -CAGUGUUUUGAAGUCCACUUAAAUAGAACUUCU
1368 -.((((....[[[[[[))))......].]]]]].
1369 ->>_PKB117:_beet_soil-borne_virus_(BSBV2_UPD-PKc)
1370 -ACGUGGGUUAUACGAUAAUAACCG
1371 -.(((.[[[[[[)))...]]]]]].
1372 ->>_PKB118:_beet_soil-borne_virus_(BSBV2_UPD-PKb)
1373 -CGGUGCUUUUAUGUUCACCGAAAUCGAACAUAC
1374 -.((((....[[[[[[))))......].]]]]].
1375 ->>_PKB119:_beet_soil-borne_virus_(BSBV3_UPD-PKc)
1376 -ACGUGGCGAAUACGAUAAUUCGUA
1377 -.(((.[[[[[[)))...]]]]]].
1378 ->>_PKB120:_beet_soil-borne_virus_(BSBV3_UPD-PKb)
1379 -UAGUGUUCGUGGAUAACACUUUAAUUAAGAUUCAUA
1380 -.((((((.[[[[[[)))))).........]]]]]].
1381 ->>_PKB121:_satellite_tobacco_necrosis_virus_1_(STNV1_PK1)
1382 -AAGCAGUCCCAGCUCUGCAUUGGGAA
1383 -.(((..[[[[[)))......]]]]].
1384 ->>_PKB122:_satellite_tobacco_necrosis_virus_1_(STNV1_PK2)
1385 -UACUACUUGCUCAUUUGUAGUCUAAAUGAGA
1386 -.(((((...[[[[[[[)))))..]]]]]]].
1387 ->>_PKB123:_satellite_tobacco_necrosis_virus_1_(STNV1_PK3)
1388 -GACGUUGGCCUCGACGUGUCGAGGUG
1389 -.((((..[[[[[[))))..]]]]]].
1390 ->>_PKB124:_satellite_tobacco_necrosis_virus_2_(STNV2_PK1)
1391 -CAGUAGUCCUGAACUAGUAAAUCAGGACC
1392 -.(((.[[[[[[[)))......]]]]]]].
1393 ->>_PKB125:_satellite_tobacco_necrosis_virus_2_(STNV2_PK2)
1394 -CCAUUCCCACUAGUGUAUUAGUGGA
1395 -.(((..[[[[[[)))...]]]]]].
1396 ->>_PKB126:_satellite_tobacco_necrosis_virus_2_(STNV2_PK3)
1397 -GAACGAGGCCCCGCGUGAAUUGGGGUG
1398 -..(((..[[[[[[)))....]]]]]].
1399 ->>_PKB130:_tobacco_rattle_virus_(TRV-PSG)
1400 -AGGGGUAAAACCCCUCGCCUACGUAAGCGUUAUUACGCCC
1401 -...............(((...[[[[[)))...]]]]]...
1402 ->>_PKB131:__(NGF-H1)
1403 -CGCUCAACUCAUGGAGCGCAAGACGAAUAGCUACAUAUUCGACAUGAG
1404 -(((((..[[[[[[))))).....((((((......)))))).]]]]]]
1405 ->>_PKB132:__(NGF-L2)
1406 -CGCUCAACCUCAGAGCGCAAGAGUCGAACGAAUACAGUUCGACAUGAGG
1407 -(((((..[[[[[))))).....(((((((.......))))))).]]]]]
1408 ->>_PKB133:__(NGF-L6)
1409 -CGCUCAACUCAUGGAGCGCACGACGGAUCACCAUCGAUUCGACAUGAG
1410 -(((((..[[[[[[))))).....((((((......)))))).]]]]]]
1411 ->>_PKB138:_barley_stripe_mosaic_virus_(BSMVbeta)
1412 -AUUGGUAUGUAAGCUACAACUUCCGGUAGCUGCGUCACACUUUAAGAGUGUGCAUACUGAGCCGAAGCUCAGCUUCGGUCCCCCAAGGGAAGACCA
1413 -.((((((((..((((((..[[[[[.))))))....((((((.....)))))))))))))).((((((.....)))))).........]]]]]....
1414 ->>_PKB139:_tobacco_mosaic_virus_(TMV-L_PKbulge)
1415 -UAGUGUCUUGGAGCGCGCGGAGUAAACAUAUAUGGUUCAUAUAUGUCCGUAGGCACGUAAAAAAAGCGAG
1416 -..((((((....[[[[((((.....((((((((.....)))))))))))))))))).........]]]].
1417 ->>_PKB140:_cucumber_green_mottle_mosaic_virus_(CGMMV_PKbulge)
1418 -UUUGCUCAUUGGUUUGCGGAAACCUCUCACGUGUGACGUUGAAGUUUCUAUGGGCAGUAAUUCUGCAAG
1419 -.((((((((....[[[[((((((.((..(((.....))).)).)))))))))))))).......]]]].
1420 ->>_PKB141:_tobacco_mild_green_mosaic_virus_(TMGMV_PKbulge)
1421 -UUGUCAUAUCUGGAUCCAACAGUUAAACCAUGUGAUGGUGUAUACUGUGGUAUGGCGUAAAACAUCGGAG
1422 -.(((((((((....[[[.(((((...((((.....))))....)))))))))))))).........]]].
1423 ->>_PKB142:_satellite_tobacco_mosaic_virus_(STMV_PKbulge)
1424 -UUUUGUUUUGGUCUUCCCGAACGCAUACGUUAGUGUGACUACCGUUGUUCGAAACAAGUAAAACAGGAAGG
1425 -.(((((((....[[[[[((((((...(((.(((.....))).)))))))))))))))).......]]]]].
1426 ->>_PKB143:_pepper_mild_mottle_virus_(PMMV-S_PKbulge)
1427 -UUGUCGUUGGGAUGGAACGCAAUUAAAUACAUGUGUGACGUGUAUUUGCGAACGACGUAAUUAUUUUUCAG
1428 -.(((((((....[[[[[(((....(((((((((.....)))))))))))))))))))........]]]]].
1429 ->>_PKB144:_odontoglossum_ringspot_virus_(ORSV-S1_PKbulge1)
1430 -UUGUGUAUAUGGAUCAUGCGGAUAAAGUUAUACUGGUGCAGUAUAACCCGUUAUACACAUAAAAUUAUGAG
1431 -.((((((((....[[[[((((.....((((((((.....)))))))))))))))))))).......]]]].
1432 ->>_PKB145:_odontoglossum_ringspot_virus_(ORSV-S1_PKbulge2)
1433 -UUGUGUCAGACGCGUGUAAGGAGUGGUCAACCUUACGACACAUUUAAAUAAUGCGUCC
1434 -.(((((..[[[[[[(((((((.........)))))))))))).........]]]]]].
1435 ->>_PKB146:_odontoglossum_ringspot_virus_(ORSV-S1_PKbulge3)
1436 -UUUCACUGCGGAUAUGUAGGUUUCCUCGGUGAAUAUAAAACUUAUAUCCC
1437 -.(((((...[[[[[((.(((...))))))))))...........]]]]].
1438 ->>_PKB147:_Saccharomyces_cerevisiae_(Sc_18S-PKE21-7/8)
1439 -AUAAUAGAAUAGGACGUUUGGUUCUAUUUUGUUGGUUUCUAGGACCAUCGU
1440 -.((((((((((...[[..[[[[[[)))))))))).......]]]]]].]].
1441 ->>_PKB151:_barley_stripe_mosaic_virus_(BSMVbeta_UPD-PK1)
1442 -AAAUGUUUGAUCAGAUCAUUCAAAUCUGAUGG
1443 -.((((....[[[[[[[))))...]]]]]]]..
1444 ->>_PKB152:_barley_stripe_mosaic_virus_(BSMVbeta_UPD-PK2)
1445 -UGGUGCCCAUCAACCAUAUGAUGGGA
1446 -.(((.[[[[[[[)))...]]]]]]].
1447 ->>_PKB153:_barley_stripe_mosaic_virus_(BSMVbeta_UPD-PK3)
1448 -GAGUGUUUGCAAGUCCACUAUAAUCGAACUUGA
1449 -.((((....[[[[[[))))......].]]]]].
1450 ->>_PKB154:_brome_mosaic_virus_(BMV3_UPD-PK1)
1451 -GAGCCCCUGACUGGGUUAAAGUCACA
1452 -.(((((.[[[[[)))))..]]]]]..
1453 ->>_PKB155:_brome_mosaic_virus_(BMV3_UPD-PK2)
1454 -CCCUUGUCUCAGGUAGAGACC
1455 -.(((.[[[[[)))..]]]]].
1456 ->>_PKB156:_brome_mosaic_virus_(BMV3_UPD-PK3)
1457 -ACUUUGGCUAAGGUUAAAAGCUU
1458 -.(((.[[[[)))......]]]].
1459 ->>_PKB157:_brome_mosaic_virus_(BMV3_UPD-PK4)
1460 -UUGUUGAAUCAGUACAAUAACUGAUA
1461 -.(((...[[[[[[)))...]]]]]].
1462 ->>_PKB158:_tobacco_rattle_virus,_strain_PSG_(TRV-PSG2_PK1)
1463 -CUUUAAGGGACCUUGUGAAAUUCAAGGG
1464 -.((((.....[[[[[))))...]]]]].
1465 ->>_PKB159:_tobacco_rattle_virus,_strain_PSG_(TRV-PSG2_PK2)
1466 -GGGCGGGUGUCGCCAGAAAUCACCG
1467 -.(((.[[[[[.)))....].]]]].
1468 ->>_PKB160:_tobacco_rattle_virus,_strain_PSG_(TRV-PSG2_PK3)
1469 -CGAUACUACUAGUUGUAUCAAAACAAAACUAA
1470 -.(((((...[[[[[))))).......]]]]].
1471 ->>_PKB161:_tobacco_rattle_virus,_strain_PSG_(TRV-PSG2_PK4)
1472 -AGGUGGAUGUUACCAUAAACAUUA
1473 -.(((.[[[[[[)))...]]]]]].
1474 ->>_PKB162:_tobacco_rattle_virus,_strain_PSG_(TRV-PSG2_PK5)
1475 -UAAUGUCGCAGGUGGCAUUUUAAAAUAAGACCUGA
1476 -.((((((.[[[[[))))))..........]]]]].
1477 ->>_PKB163:_Homo_sapiens_(Hs_SRP-pkn)
1478 -GCCGGGCGCGGUGGCGCGUGCCUGUAGUCCCAGCUACUCGGGAGGCU
1479 -(((.((((((.[[[[.)))))).....((((.]]]]...))))))).
1480 ->>_PKB164:_poa_semilatent_virus_(PSLVbeta)
1481 -AUUGGUAUGUAAGCUACUUCUUCCAGUAGCUGCGUCAUAACAUCAAGGUUAUGCAUACUGAGCCGAAGCUCAGCUUCGGUCCUCCAAGGAAGACCA
1482 -.((((((((..((((((..[[[[[.))))))....((((((......)))))))))))))).((((((.....))))))........]]]]]....
1483 ->>_PKB165:_poa_semilatent_virus_(PSLVbeta_UPD-PK1)
1484 -AUUGCCACUGUGGAAAUCAGUGA
1485 -.(((.[[[[[)))....]]]]].
1486 ->>_PKB166:_poa_semilatent_virus_(PSLVbeta_UPD-PK2)
1487 -CGGUUUUAUCUACCAUAAGAUAAA
1488 -.(((.[[[[[[)))...]]]]]].
1489 ->>_PKB167:_poa_semilatent_virus_(PSLVbeta_UPD-PK3)
1490 -AAGUGUUUUCAUGUCCACUUAAAUCGAACAUGAAC
1491 -.((((..[[[[[[[[))))......].]]]]]]].
1492 ->>_PKB169:_Coxsackie_B_virus_(CoxB3)
1493 -ACCCUACUGUGCUAACCGAACCAGAUAACGGUACAGUAGGGGUAAAUUCUCCGCAUUCGGUGCGGAAAAAAAA
1494 -.((((((((((((.[[[[[[.........)))))))))))).....((.(((((.]]]]]]))))).))....
1495 ->>_PKB172:_bamboo_mosaic_virus_(BaMV)
1496 -CUUUUGGUUUCUACAGUUUUUUCCAAAAAAAAAAAAAAA
1497 -.((((((.........[[[[[[))))))...]]]]]]..
1498 ->>_PKB173:_Satellite_cereal_yellow_dwarf_virus-RPV_RNA_(satRPV)
1499 -ACAGAGCGCGUACUGUCUGACGACGUAUCCGCGCGGACUAGAAGGCUGGUGCCUCGUCCAACAAAUAGAUACA
1500 -((((.[[[[[..))))........(((((]]]]]((((....((((....)))).))))........))))).
1501 ->>_PKB175:__(biotin-PK)
1502 -CACCGACCAUAGGCUCGGGUUGCCAGAGGUUCCACACUUUCAUCGAAAAGCCUAUGC
1503 -.(((((.[[[[[[[)))))..............................]]]]]]].
1504 ->>_PKB176:__(biotin-PK-AN69.1)
1505 -GGACCGUCAGAGGACACGGUUAAAAAGUCCUCU
1506 -..(((((..[[[[[[)))))......]]]]]].
1507 ->>_PKB177:_Rattus_rattus_(black_rat)_(Rr_ODCanti)
1508 -UGCUCCUGAUGUCCCUCACCCACCCCUGAAGAUCCCAGGUGGGCGAGGGAACAGUCAGCGGGAUCACAGU
1509 -............(((((.((((((......[[[[[[.)))))).)))))..........]]]]]].....
1510 ->>_PKB182:_soil-borne_rye_mosaic_virus_(SBRMV1-PKa)
1511 -GGGGUUCAAAUCCCCCCCCGAACCGGAGGGUUAUCCGGCCCA
1512 -...............(((....[[[[[)))...]]]]]....
1513 ->>_PKB183:_soil-borne_rye_mosaic_virus_(SBRMV1-UPD-PKb)
1514 -ACGUCGUGCAGUACGGUAAACUGCACA
1515 -.(((.[[[[[[[)))....]]]]]]].
1516 ->>_PKB184:_soil-borne_rye_mosaic_virus_(SBRMV1_UPD-PKc)
1517 -UUCUGUUUUUCGAACAGAUGUAAAUCGAAGA
1518 -.(((((.[[[[[[)))))......]]]]]].
1519 ->>_PKB185:_soil-borne_rye_mosaic_virus_(SBRMV1_UPD-PKd)
1520 -ACGUGGCCAUCACGAUAGAUGGUU
1521 -.(((.[[[[[[)))...]]]]]].
1522 ->>_PKB186:_soil-borne_rye_mosaic_virus_(SBRMV1_UPD-PKe)
1523 -AAGCCUAUUUGUACGGGUUGAGUACAAAC
1524 -.(((((.[[[[[..)))))....]]]]].
1525 ->>_PKB187:_soil-borne_rye_mosaic_virus_(SBRMV1_UPD-PKf)
1526 -GCCGCUGGGAUUGCGGAUUAUAAAUCG
1527 -.((((...[[[[))))......]]]].
1528 ->>_PKB188:_soil-borne_rye_mosaic_virus_(SBRMV1_UPD-PKg)
1529 -UCGUUGCCGUCACGAUAGACGGA
1530 -.(((..[[[[[)))...]]]]].
1531 ->>_PKB189:_soil-borne_rye_mosaic_virus_(SBRMV1_UPD-PKh)
1532 -AGUCUAACAUGUCGGGCUGAGACAUGUC
1533 -.((((.[[[[[[[))))...]]]]]]].
1534 ->>_PKB190:_Plautia_stali_intestine_virus_(PSIV_IRES)
1535 -CUCGCUCAAACAUUAAGUGGUGUUGUGCGAAAAGAAUCUCACUUCAA
1536 -.((((...(((((.[[[[[)))))..)))).........]]]]]...
1537 ->>_PKB194:_soil-borne_wheat_mosaic_virus_(SBWMV1_UPD-PKb)
1538 -UACGCUGUACAGUGCGUUAAACUGUACA
1539 -..(((.[[[[[[[)))....]]]]]]].
1540 ->>_PKB195:_soil-borne_wheat_mosaic_virus_(SBWMV1_UPD-PKc)
1541 -CUCUGUUGAUCAAACAGAAAUAAAUUGAUUA
1542 -.(((((.[[[[[[)))))......]]]]]].
1543 ->>_PKB196:_soil-borne_wheat_mosaic_virus_(SBWMV1_UPD-PKd)
1544 -ACGCGGUCAUUGCGAUAAAUGACU
1545 -.(((.[[[[[[)))...]]]]]].
1546 ->>_PKB197:_soil-borne_wheat_mosaic_virus_(SBWMV1_UPD-PKe)
1547 -GAACCUAUUUGCUCGGGUUGAGUGCAAAC
1548 -..((((.[[[[[..)))).....]]]]].
1549 ->>_PKB198:_soil-borne_wheat_mosaic_virus_(SBWMV1_UPD-PKf)
1550 -ACCGCCUGAUUAGCGGUCUACAAGUUAAUCGA
1551 -.((((..[[[[[)))).........]]]]]..
1552 ->>_PKB199:_soil-borne_wheat_mosaic_virus_(SBWMV1_UPD-PKg)
1553 -UCGUGGUCAGUACGAUAACUGAU
1554 -.(((..[[[[[)))...]]]]].
1555 ->>_PKB200:_soil-borne_wheat_mosaic_virus_(SBWMV1_UPD-PKh)
1556 -AGUCUAAUUUGUCGGGCUGAGACAAAUC
1557 -.((((.[[[[[[[))))...]]]]]]].
1558 ->>_PKB201:_soil-borne_wheat_mosaic_virus_(SBWMV2_UPD-PKb)
1559 -GGCGUUCUACAGUACGUUUAAACUGUAGG
1560 -..(((.[[[[[[[))).....]]]]]]].
1561 ->>_PKB202:_soil-borne_wheat_mosaic_virus_(SBWMV2_UPD-PKi)
1562 -UGGUGCUUGUUAUUUCACCUAAAUCGAAAUAACG
1563 -.((((...[[[[[[[)))).......]]]]]]].
1564 ->>_PKB203:_soil-borne_wheat_mosaic_virus_(SBWMV2_UPD-PKk)
1565 -ACGUGGUCUUCACGAUAGAAGAUG
1566 -.(((.[[[[[[)))...]]]]]].
1567 ->>_PKB204:_soil-borne_wheat_mosaic_virus_(SBWMV2_UPD-PKl)
1568 -CAGAGUUAUCAUACUCUAUAAACUAUGAC
1569 -.((((...[[[[[))))......]]]]].
1570 ->>_PKB205:_Palmaria_palmata_(Pp_18S-PKE23-9/12)
1571 -UUAGAGUGUUCAAAGCCAGGCGUUUGCCGUGAAUACAUUAGCAUGGAA
1572 -.((..((.[[[[..))(((((....))).))..))........]]]].
1573 ->>_PKB206:_Homo_sapiens_(Hs_PrP)
1574 -GCCUCAUGGUGGUGGCUGGGGGCAGCCUCAUGGUGGUGGCUGGGG
1575 -...((((((.............[[[[[))))))....]]]]]...
1576 ->>_PKB207:_Bos_Taurus_(cow)_(Bt_PrP)
1577 -GCCCCAUGGAGGUGGCUGGGGCCAGCCUCAUGGAGGUGGCUGGGG
1578 -...((((((............[[[[[[))))))....]]]]]]..
1579 ->>_PKB210:_Bordetella_pertussis_(Bp_PK2)
1580 -CCGCUGCACUGAUCUGUCCUUGGGUCAGGCGGGGGAAGGCAACUUCCCAGGGGGCAACCCCGAACCGCAGCAGCGACAUUCACAAGGAAU
1581 -.((((((..(((...[[[[[[[..))).((((((((((....)))))).((((....))))...)))).)))))).......]]]]]]].
1582 ->>_PKB212:_Plautia_stali_intestine_virus_(PSIV_IRES-PKIII)
1583 -AGGUCUUGUAUAUUUAUACUUACCACACAAGAUGGACCGGAGCAGCCCUCCAAUAUCUAGUGUA
1584 -.((((..((((....)))).....[[[[.[[[[[))))((((.....))))..]]]]].]]]].
1585 ->>_PKB213:_Himetobi_P_virus_(HiPV_IRES-PKI)
1586 -CAGCCUUGUAGUUUUAGUGGACUUUAGGCUAAAGAAUUUCACUAG
1587 -.(((((...((((.[[[[[))))..))))).........]]]]].
1588 ->>_PKB215:_Himetobi_P_virus_(HiPV_IRES-PKIII)
1589 -GACCCUUAGUUAUUUAGCUUUACCGCCCAGGAUGGGGUGCAGCGUUCCUGCAAUAUCCAGGGCA
1590 -.((((..((((....)))).....[[[[.[[[[[))))((((.....))))..]]]]].]]]].
1591 ->>_PKB216:_Drosophila_C_virus_(DCV_IRES-PKI)
1592 -CUUCUUAUAUGAUUAGGUUGUCAUUUAGAAUAAGAAAAUAACCUG
1593 -.((((...(((((.[[[[[)))))..)))).........]]]]].
1594 ->>_PKB218:_Porcine_reproductive_and_respiratory_syndrome_virus,_North_American_isolate_(16244B)_(PRRSV-16244B)
1595 -UUUAAACUGCUAGCCGCCAGCGGCUUGACCCGCUGUGGUCGCGGCGGCUUGGUUGUUACUGAGACAGCGGUA
1596 -............((((((.((((((....[[[[[[[))))))))))))...............]]]]]]]..
1597 ->>_PKB220:_Drosophila_C_virus_(DCV_IRES-PKIII)
1598 -UUAGGUUAACUAUUUAGUUUUACUGUUCAGGAUGCCUAUUGGCAGCCCCAUAAUAUCCAGGACA
1599 -.((((..((((....)))).....[[[[.[[[[[)))).(((.....)))...]]]]].]]]].
1600 ->>_PKB221:_Cricket_paralysis_virus_(CrPV_IRES-PKI)
1601 -CGGUUUUUCAGAUUAGGUAGUCGAAAAACCUAAGAAAUUUACCUG
1602 -.((((((...(((.[[[[[)))..)))))).........]]]]].
1603 ->>_PKB223:_Cricket_paralysis_virus_(CrPV_IRES-PKIII)
1604 -UUAGGUUAGCUAUUUAGCUUUACGUUCCAGGAUGCCUAGUGGCAGCCCCACAAUAUCCAGGAAG
1605 -.((((..((((....)))).....[[[[.[[[[[))))((((.....))))..]]]]].]]]].
1606 ->>_PKB224:_Triatoma_virus_(TrV_IRES-PKI)
1607 -UUUCCUAUACCUCGAGUCGGGUUUGGAAUCUAAGGUUGACUCG
1608 -.((((...((((.[[[[[))))..)))).........]]]]].
1609 ->>_PKB226:_Triatoma_virus_(TrV_IRES-PKIII)
1610 -UGCGCUUGCCUAUUUAGGCAUACUUCUCAGGAUGGCGCGUUGCAGUCCAACAAGAUCCAGGGAC
1611 -.((((..((((....)))).....[[[[.[[[[.))))((((.....))))...]]]].]]]].
1612 ->>_PKB227:_Black_queen_cell_virus_(BQCV_IRES-PKI)
1613 -AUGUUUAGAAGAUUAGGUAGUCUCUAAACAGAACAAUUUACCUG
1614 -.(((((...((((.[[[[[))))..)))))........]]]]].
1615 ->>_PKB229:_Black_queen_cell_virus_(BQCV_IRES-PKIII)
1616 -AUCACCGUACCUAUUUAGGUUUACGCUCCAAGAUCGGUGGAUAGCAGCCCUAUCAAUAUCUAGGAGA
1617 -..((((..((((....)))).....[[[[.[[[[.))))(((((.....)))))...]]]].]]]].
1618 ->>_PKB230:_Rhopalosiphum_padi_virus_(RhPV_IRES-PKI)
1619 -CAGGAGAGCAUACGCUAGGUCGCGUUGACUAUCCUUAUAUAUGACCUG
1620 -.((((.((((.((((.[[[[[)))))).)).)))).......]]]]].
1621 ->>_PKB232:_Rhopalosiphum_padi_virus_(RhPV_IRES-PKIII)
1622 -UUGGUUAGCUAUUUAGCUUUACUAAUCAAGACGCCGUCGUGCAGCCCACAAAAGUCUAGAUA
1623 -.(((..((((....))))......[[[.[[[[.)))..(((.....)))....]]]].]]].
1624 ->>_PKB233:_Porcine_reproductive_and_respiratory_syndrome_virus,_European_Lelystad_strain_(LV)_(PRRSV-LV)
1625 -UUUAAACUGUUAGCCGCCAGCGGCUUGACCCGCUGUGGCCGCGGCGGCCUAGUUGUGACUGAAACGGCGGU
1626 -............((((((.((((((....[[[[[[[))))))))))))...............]]]]]]].
1627 ->>_PKB234:_Variovorax_paradoxus_(Vp_PK2)
1628 -GCCUUGCAACAGUUGGCCGAUGGGCUGGGCAAGGGGGUCUGGAGCAAUCCUGACCUCCCGGCUGCAAGGAUAACUACAUGGGCU
1629 -.((((((..(((...[[[[[[[..))).(((((((((((((((....))))))))))))))).)))))).......]]]]]]].
1630 ->>_PKB235:_Giardiavirus_(GLV_IRES)
1631 -GGAGACCCAUGGAGAGUCUCCAGAGGUUCCUAAGGCCUCGAUCGCGCCUGCCGGGAGGCAGAAUGUCCCGGUUCUCC
1632 -((((((....[[[[[)))))).(((((.......)))))..........(((((((.........)))))))]]]]]
1633 ->>_PKB237:_West_Nile_virus_(WNV_PK3end)
1634 -ACCUGGGAUAGACUAGGGGAUCUUCUGCUCUGCACAACCAGCCACACGGCACAGUGCGCCGACAUAGGUGGCUGGUGGUGCUAGAACACAGGAUCU
1635 -.(((((..[[[[)))))......]]]].(((((((.(((((((((.((((.......))))......))))))))).)))).)))...........
1636 ->>_PKB238:_Dengue_virus_type_2_(DEN2_PK1)
1637 -AUGGGGGCCCAAGGUGAGAUGAAGCUGUAGUCUCACUGGAAGGACUAGAGGUUAGAGGAGACCCCCCCAAAACAAAAAACAGCA
1638 -.((((((((...((((((((...[[[[[.))))))))....))......((((......)))))))))).........]]]]].
1639 ->>_PKB240:_beet_chlorosis_virus_(BChV)
1640 -GGGAAAUGGACUGAGCGGCGCCGACCGCCAAACAACCGGCA
1641 -..............((((.[[[[.))))........]]]].
1642 ->>_PKB241:_Montana_Myotis_leukoencephalitis_virus_(MMLV_PKb)
1643 -AGAGAGUUAUUCGCUCCUCUCGAGAUUGAGCGGC
1644 -.(((((....[[[[[[)))))......]]]]]].
1645 ->>_PKB242:_Rio_Bravo_virus_(RBV_PKb)
1646 -UGAGGUUUUUCCCCUCCCUCAUGAUGAGGGGAAG
1647 -.((((...[[[[[[[[)))).....]]]]]]]].
1648 ->>_PKB244:_hepatitis_A_virus_(HAV)
1649 -UUAAACAAAUUUUCUUAAAAUUUCUGAGGUUUGUUUAUUUCUUUUAUCAGUAAAU
1650 -.((((((((((.........[[[[[[[)))))))))).........]]]].]]].
1651 ->>_PKB245:_Human_Parechovirus_1_(HPeV1)
1652 -CCCAGCCUUGGGGUGGCUGGUCAAUAAAAACCCCC
1653 -.((((((..[[[[[)))))).........]]]]].
1654 ->>_PKB247:_Nemesia_ring_necrosis_virus_(NeRNV_PKa)
1655 -CCCCUGUCCCGGGUAGGGAACC
1656 -.(((..[[[[)))..]]]]...
1657 ->>_PKB248:_Nemesia_ring_necrosis_virus_(NeRNV_PKb)
1658 -UGUUCCUUGGAUUGCUACGUUCACCAGAUUUGUGUAAUCUGGCCGUUAGGAACUUAAAAUUGCGCG
1659 -.((((((.....[[[((((....(((((((.....))))))).))))))))))........]]]..
1660 ->>_PKB249:_Nemesia_ring_necrosis_virus_(NeRNV_UPD-PK1)
1661 -UAGUGUUUCGGCUUCCACUUAAAUCGAAAGCCA
1662 -.((((....[[[[[[))))......].]]]]].
1663 ->>_PKB250:_Nemesia_ring_necrosis_virus_(NeRNV_UPD-PK2)
1664 -GGGUGGCGCACACCACAGUGCGUA
1665 -.(((.[[[[[[)))...]]]]]].
1666 ->>_PKB251:_Nemesia_ring_necrosis_virus_(NeRNV_UPD-PK3)
1667 -CAGCCUCUCACAGCUUCCUCGUGAGG
1668 -.(((..[[[[[.))).....]]]]].
1669 ->>_PKB253:_White_Bream_Virus_(WBV)
1670 -UUUAAACUGGUGGGGCAGUGUCUAGGAUUGACGUUAGACACUGCUUUUUGCCCGUUUCAAACAGGUGAAUACAAACCGUCAU
1671 -...........((((((((((((((...[[[[[)))))))))))))).............................]]]]].
1672 ->>_PKB254:_SARS_coronavirus_(SARS-CoV)
1673 -UUUAAACGGGUUUGCGGUGUAAGUGCAGCCCGUCUUACACCGUGCGGCACAGGCACUAGUACUGAUGUCGUCUACAGGGCUU
1674 -............(((((((((((...[[[[[[[)))))))))))((((((((.........))).)))))...]].]]]]].
1675 ->>_PKB255:_mouse_hepatitis_virus_(MHV)
1676 -CUCUCUAUCAGAAUGGAUGUCUUGCUGUCAUAACAGAUAGAGAAGGUUGUGGCAGA
1677 -.((((((((...............[[[[[[[[[[.))))))))..]]]]]]]]]].
1678 ->>_PKB256:_bovine_coronavirus_(BCV)
1679 -CUCUCUAUCAGAAUGGAUGUCUUGCUGCUAUAAUAGAUAGAGAAGGUUAUAGCAGA
1680 -.((((((((...............[[[[[[[[[[.))))))))..]]]]]]]]]].
1681 ->>_PKB257:_Mus_musculus_(mouse)_(Mm_Edr)
1682 -GGGAAACUCCCCGGCCCCGCUGUAGGGGGACCUUCAGCGACAGGGCCAGAACGAAUAAGGUCCCCA
1683 -............((((((((((...[[[[[[[[[)))))...))))).........]]]]]]]]].
1684 ->>_PKB258:_Homo_sapiens_(Hs_Ma3)
1685 -GGGAAACGGGAACUGGGCUUGGGACAAGAGCCAUCCCAAGUCCAAGGCCAAGUAGGCUCG
1686 -.............(((((((((((...[[[[[.)))))))))))..........]]]]].
1687 ->>_PKB259:_potato_yellow_vein_virus_(PYVV1)
1688 -CGGUAGAAAAGAUGGUUUAAACCACGCCUUCUACCAAGUUAGUAAAUAAAUAGGCGG
1689 -.((((((.....((((....))))[[[[[))))))................]]]]].
1690 ->>_PKB260:_potato_yellow_vein_virus_(PYVV2)
1691 -AGUAGAAAAGUUGGUGCUUAGACCACGCCCUCUACCGUAAUAAUAGAUAAAUAGGCG
1692 -.(((((.....((((......))))[[[[.)))))..................]]]]
1693 ->>_PKB261:_potato_yellow_vein_virus_(PYVV3)
1694 -CGGUAGAAAAGAUGGUUUGAAAACCACGCCUUCUACCAAUAUAGUAAAUAAAUAGGCGG
1695 -.((((((.....(((((....)))))[[[[[))))))................]]]]].
1696 ->>_PKB262:_cucumber_yellows_virus_(CuYV1)
1697 -CGUUUGGUCGAAUGCUACUAGAGCAGCCUGACCAAACUAGUAUUAGUAAAUAAAGG
1698 -.((((((((...((((.....)))).[[[))))))))................]]]
1699 ->>_PKB263:_cucurbit_yellow_stunting_disorder_virus_(CYSDV1)
1700 -CGACACUCUAAAGAGUUCCGUGAGGAACCACCUUGAGUGUCUAGUUAUAAAUAAACUAGGUC
1701 -.(((((((......(((((....))))).[[[[.)))))))................]]]].
1702 ->>_PKB264:_cucurbit_yellow_stunting_disorder_virus_(CYSDV2)
1703 -CGACACUCUAAAGUGUUCCAAGAGGAACCACCUUGAGUGUCUAGUUAUAAAUAAACUAGGUC
1704 -.(((((((......(((((....))))).[[[[.)))))))................]]]].
1705 ->>_PKB265:_sweet_potato_chlorotic_stunt_virus_(SPCSV1)
1706 -CGGUUUUCCUAAAUCGUCGUGAGACGGACCUUGGAAAACCUAGUAUUUAAAUAACUAGGUC
1707 -.((((((((.....((((....))))[[[[[.))))))))................]]]]]
1708 ->>_PKB266:_lettuce_infectious_yellows_virus_(LIYV1)
1709 -UGUCUUCCUAAAAUCCUUGGAAGACUGUAUAUAUAGAAUAAAGGUCG
1710 -.(((((((......[[[[)))))))...............]]]]...
1711 ->>_PKB267:_little_cherry_virus_1_(LChV-1)
1712 -AAUGCAACUUUUAAAUAGUUUAUCUGUUAAGAUAAACCACCUAGGUUGCAUAUAUAAAAAAUAAAAGGUGCC
1713 -.(((((((((.......((((((((....))))))))[[[[[)))))))))..............]]]]]..
1714 ->>_PKB268:_beet_yellows_virus_(BYV)
1715 -CUCCUAGCGAAGUCCCGCUAGGAAGAAAAAAUAAGGGCCG
1716 -.(((((((...[[[[.)))))))...........]]]]..
1717 ->>_PKB269:_citrus_tristeza_virus_(CTV)
1718 -AGUUCUCCUUAGAGUGUGUGUUGUUUACCCAACGCACUGUCCCUAUGGGGGGCCAACAUAGGUCCA
1719 -.(((((((.......((((((((......))))))))....[[[[[)))))))....]]]]]....
1720 ->>_PKB270:_Pineapple_mealybug_wilt_associated_virus_-_2_(PMWaV-2)
1721 -CAAAGUCCUAUAAACCUCAAUAAUCCCUCGUUAGGAGGGACACGCGAGGACUUUGGCGUGCC
1722 -.((((((((..............((((((.....))))))[[[[[.)))))))).]]]]]..
1723 ->>_PKB271:_Grapevine_leafroll-associated_virus_-_2_(GLRaV-3)
1724 -ACGCCAAAAUCCAAUUAAAGUUUGGGACCUAGGCGGGCCUCUUACGAGGCUAACUUAUCGACAAUAAGUUAGGUC
1725 -.((((.....((((.......))))[[[[[[))))((((((....))))))..................]]]]]]
1726 ->>_PKB272:_strawberry_chlorotic_fleck_associated_virus_(SCFaV)
1727 -ACUGUGAUUAUAAAAGUGGAGUACUAAAGUACCCACUACCUUUAAUCACAGACAAUAAAGGUCCAU
1728 -.((((((((.....(((((.((((....)))))))))[[[[[[)))))))).....]]]]]]....
1729 ->>_PKB273:_influenza_A_virus,_strain_A/PR/8/34_(IAV_PK_NS)
1730 -UUCCAGGACAUACUGCUGAGGAUGUCAAAAAUGCAGUUGGAGUCCUCA
1731 -.(((((...........[[[[[[.............)))))]]]]]].
1732 ->>_PKB274:_influenza_B_virus,_strain_B/Victoria/02/1987_(IBV_PK_NS)
1733 -ACUGAUGAUCUUACAGUGGAGGAUGAAGAAGAUGGCCAUCGGAUCCUCA
1734 -.((((((...........[[[[[[............))))))]]]]]].
1735 ->>_PKB275:_Bacillus_subtilis_(Bs_glmS_P3.1)
1736 -CCGGCUGAGUGUGCAGAUCACAGCCGUAAGAAUUUCUUCAAACCAAGGGGGUGACUCCUUGAACAAAGAGAAAUCACAUGAUCUU
1737 -.((((((.......[[[[[[)))))).....(((((((.....(((((((....)))))))......)))))))....]]]]]].
1738 ->>_PKB276:_Bacillus_subtilis_(Bs_glmS_P1.1)
1739 -CGCCCGAACUAAGCGCCCGGAAAAAGGCUUAGUUGACGAGGAUGGAGGUUAUCGAAUUUCGCGGAUCCUCCCG
1740 -.(((((((((((((............)))))))).........[[[[[....(((...))))))))]]]]]..
1741 ->>_PKB277:_tobacco_etch_virus_(TEV_PK1)
1742 -CGAAUCUCAAGCAAUCAAGCAUUCUACUUCUAUUGCA
1743 -.((((((...[[[[[..)).)))).......]]]]].
1744 ->>_PKB278:_tobacco_etch_virus_(TEV_PK2)
1745 -AUUUAAAUCAUUUCUUUUAAAGCAAAAGC
1746 -.((((((...[[[..))))))....]]].
1747 ->>_PKB279:_tobacco_etch_virus_(TEV_PK3)
1748 -CAAUUUUCUGAAAAUUUUCAC
1749 -.(((((..[[[))))).]]].
1750 ->>_PKB280:_Visna-Maedi_virus_(VMV)
1751 -GGGAAACAACAGGAGGGGGCCACGUGUGGUGCCGUCCGCGCCCCCUAUGUUGUAACAGAAGCACCACC
1752 -.............(((((((.....[[[[[[[.......)))))))..............]]]]]]].
1753 ->>_PKB281:_sugarcane_yellow_leaf_virus_(ScYLV)
1754 -GGGAAACGAGCCAAGUGGCGCCGACCACUUAAAAACACCGGAA
1755 -.............(((((..[[[.))))).........]]]..
1756 ->>_PKB282:_foot-and-mouth_disease_virus,_serotype_A_(FMDV-A_PKI)
1757 -CCGUCGUUUCCGACGUAAAAGGAAGCAA
1758 -.((((..[[[[)))).....]]]]....
1759 ->>_PKB283:_foot-and-mouth_disease_virus,_serotype_A_(FMDV-A_PKII)
1760 -CCGCCUGUCCCGGCGUUAAAGGGAAGUAA
1761 -.((((..[[[[)))).....]]]].....
1762 ->>_PKB284:_foot-and-mouth_disease_virus,_serotype_A_(FMDV-A_PKIII)
1763 -ACCGCCUACCCCGGCGUUAACGGGGAACAA
1764 -..((((..[[[[)))).....]]]].....
1765 ->>_PKB285:_foot-and-mouth_disease_virus,_serotype_O_(FMDV-O1K_PKI)
1766 -ACCGUCGUUCCCGACGUAAAAGGGAGG
1767 -..((((..[[[[)))).....]]]]..
1768 ->>_PKB286:_foot-and-mouth_disease_virus,_serotype_O_(FMDV-O1K_PKII)
1769 -ACCGUCCGGCCCGACGUAAAAGGGUGGUAA
1770 -..((((...[[[)))).....]]]......
1771 ->>_PKB287:_foot-and-mouth_disease_virus,_serotype_O_(FMDV-O1K_PKIII)
1772 -CCGUCUUUCCCGACGUUAAAGGGAUG
1773 -.((((..[[[[)))).....]]]]..
1774 ->>_PKB288:_foot-and-mouth_disease_virus,_serotype_O_(FMDV-O1K_PKIV)
1775 -CCUUCGCUCGGAAGUAAAACGACAA
1776 -.((((..[[[)))).....]]]...
1777 ->>_PKB289:_foot-and-mouth_disease_virus,_serotype_C_(FMDV-C_PKI)
1778 -ACCGUCGUUCCCGACGUAAAAGGGAUGU
1779 -..((((..[[[[)))).....]]]]...
1780 ->>_PKB290:_foot-and-mouth_disease_virus,_serotype_C_(FMDV-C_PKII)
1781 -ACCGUCUCUCCCGACGUUAAAGGGAUGUAA
1782 -..((((..[[[[)))).....]]]].....
1783 ->>_PKB291:_foot-and-mouth_disease_virus,_serotype_C_(FMDV-C_PKIII)
1784 -CCGCCUAUCCCGGCGUUAAUGGGAGG
1785 -.((((..[[[[)))).....]]]]..
1786 ->>_PKB292:_foot-and-mouth_disease_virus,_serotype_C_(FMDV-C_PKIV)
1787 -CCUUCACCUGGAAGUAAAACAGCAA
1788 -.((((..[[[)))).....]]]...
1789 ->>_PKB293:_encephalomyocarditis_virus_(EMCV-R_PKB)
1790 -ACGUGAAGGCUACGAUAGUGCCAG
1791 -.((((..[[[)))).....]]]..
1792 ->>_PKB294:_encephalomyocarditis_virus_(EMCV-R_PKC)
1793 -AGGGCGGGUACUGCCGUAAGUGCCA
1794 -..(((.[[[[[[)))...]]]]]].
1795 ->>_PKB295:_Mengovirus_(Mengo_PKB)
1796 -ACGUGAAGGCUACGAUAGUGCCAG
1797 -.((((..[[[)))).....]]]..
1798 ->>_PKB296:_Mengovirus_(Mengo_PKC)
1799 -AGGGCGGGUCCUGCCGAAAGUGCCAA
1800 -..(((.[[[.[[)))...]].]]]..
1801 ->>_PKB297:_hepatitis_A_virus_(HAV_PK1)
1802 -AAGUCCAUGGUGAGGGGACUUGAUACCUCACCG
1803 -.(((((..[[[[[[[))))).....]]]]]]].
1804 ->>_PKB298:_hepatitis_A_virus_(HAV_PK2)
1805 -CGCCGUUUGCCUAGGCUAUAGGCUAAAUU
1806 -.(((....[[[[[)))..]]]]]......
1807 ->>_PKB299:_Theiler's_murine_encephalomyelitis_virus_(TMEV)
1808 -ACGCGGGUACUGCGAUAGUGCCACC
1809 -.(((.[[[[[[)))..]]]]]]...
1810 ->>_PKB300:__(antiHIV1-RT_1.1)
1811 -UCAAGAAUUCCGUUUUCAGUCGGGAAAAACUGAACAA
1812 -.......(((((..[[[[[[)))))...]]]]]]...
1813 ->>_PKB301:__(antiHIV1-RT_1.3a)
1814 -GAAUAUCUUCCGAAGCCGAACGGGAAAACCGGCAUCU
1815 -.......(((((..[[[[..)))))....]]]]....
1816 ->>_PKB302:__(antiHIV1-NC_psi-50-1)
1817 -GCCAGUGGUUUGCAAUGCUGGUCCGGUGCGU
1818 -(((((((...[[[[.)))))))....]]]].
1819 ->>_PKB303:_Bombyx_mori_(R2_retroPK)
1820 -AGCCCCGAUGGACGGACCGCGAGGACCGUCAAGCCUAGCAGGUACCUUCGGGUGGGGCCUUGCGAUACCUGCGGGC
1821 -.(((((....(((((.((....)).)))))...[[[.[[[[[[(((....))))))))........]]]]]]]]].
1822 ->>_PKB304:_B._subtilis_(SBU)
1823 -AGAGGUUCUAGCUACACCCUCUAUAAAAAACUAA
1824 -(((((...[[[......)))))........]]].
1 ->All values represent delta G in units of deka cal/mol (kcal/mol*100)
2 ->Stacking 5' X1 Y1 3'
3 -> 3' X2 Y2 5'
4 ->X1X2 = AU CG GC UA GU UG (row headings)
5 ->Y1Y2 = AU CG GC UA GU UG (column headings)
6 - -90 -220 -210 -110 -60 -140
7 --210 -330 -240 -210 -140 -210
8 --240 -340 -330 -220 -150 -250
9 --130 -240 -210 -90 -100 -130
10 --130 -250 -210 -140 -50 130
11 --100 -150 -140 -60 30 -50
12 ->Hairpin Loop Energies: size = 1,2,3,..,30
13 - 0 0 570 560 560 540 590 560 640 650 660 670 680 690 690 700 710 710 720 720 730 730 740 740 750 750 750 760 760 770
14 ->Bulge loop Energies: size = 1,2,3,..,30
15 - 380 280 320 360 400 440 460 470 480 490 500 510 520 530 540 540 550 550 560 570 570 580 580 580 590 590 600 600 600 610
16 ->Interior Loop Energies: size = 1,2,3,..,30
17 - 0 0 0 170 180 200 220 230 240 250 260 270 280 290 300 300 310 310 320 330 330 340 340 340 350 350 360 360 360 370
18 ->NINIO asymmetry Terms: m1, m2, m3, m4, max
19 ->Energy = MAX[ max, asymmetry*m#] where # = MIN(4,L1,L2)
20 ->and L1, L2 are lengths of each side of loop,
21 ->and asymmetry = |L1-L2|
22 - 50 50 50 50 300
23 ->Triloops 5' .. 3' (Not listed equals 0 bonus)
24 -AAAAU 0
25 ->Tetraloops 5' .. 3' (Not listed equals 0 bonus)
26 -AGAAAU -200
27 -AGCAAU -150
28 -AGUAAU -150
29 -AGUGAU -150
30 -CGAAAG -300
31 -CGAAGG -250
32 -CGAGAG -200
33 -CGCAAG -300
34 -CGCGAG -250
35 -CGGAAG -300
36 -CGGGAG -150
37 -CGUAAG -200
38 -CGUGAG -300
39 -CUAACG -200
40 -CUACGG -250
41 -CUUCGG -300
42 -GGAAAC -300
43 -GGAAGC -150
44 -GGAGAC -300
45 -GGCAAC -250
46 -GGCGAC -150
47 -GGGAAC -150
48 -GGGAGC -150
49 -GGGGAC -300
50 -GGUGAC -300
51 -GUGAAC -150
52 -UGAAAA -150
53 -UGAAAG -200
54 -UGAGAG -250
55 -UGGAAA -150
56 ->Mismatch HP:
57 ->Columns 5'-AU,CG,GC,UA,GU,UG-3'
58 ->rows 5'-AA,AC,AG,AU,CA,..,UU-3'
59 - -30 -150 -110 -50 20 -50
60 - -50 -150 -150 -30 -50 -30
61 - -30 -140 -130 -60 -30 -60
62 - -30 -180 -210 -50 -30 -50
63 - -10 -100 -110 -20 -10 -20
64 - -20 -90 -70 -10 -20 -10
65 --150 -290 -240 -120 -150 -170
66 - -20 -80 -50 0 -20 0
67 --110 -220 -240 -140 -90 -80
68 --120 -200 -290 -120 -110 -120
69 - -20 -160 -140 -70 -30 -30
70 - 20 -110 -120 -20 0 -70
71 - -30 -170 -190 -30 -30 -60
72 - -30 -140 -100 -10 -30 -10
73 - -60 -180 -220 -50 -40 -60
74 --110 -200 -150 -80 -110 -80
75 ->Mismatch Interior:
76 ->Columns 5'-AU,CG,GC,UA,GU,UG-3'
77 ->rows 5'-AA,AC,AG,AU,CA,..,UU-3'
78 - 70 0 0 70 70 70
79 - 70 0 0 70 70 70
80 - -40 -110 -110 -40 -40 -40
81 - 70 0 0 70 70 70
82 - 70 0 0 70 70 70
83 - 70 0 0 70 70 70
84 - 70 0 0 70 70 70
85 - 70 0 0 70 70 70
86 - -40 -110 -110 -40 -40 -40
87 - 70 0 0 70 70 70
88 - 70 0 0 70 70 70
89 - 70 0 0 70 70 70
90 - 70 0 0 70 70 70
91 - 70 0 0 70 70 70
92 - 70 0 0 70 70 70
93 - 0 -70 -70 0 0 0
94 ->Dangle Energies: 5' X1 Y 3'
95 -> 3' X2 . 5'
96 ->Columns: Y = A, C, G, U
97 ->Rows = X1X2 = AU,CG,GC,UA,GU,UG
98 - -80 -50 -80 -60
99 --170 -80 -170 -120
100 --110 -40 -130 -60
101 - -70 -10 -70 -10
102 - -80 -50 -80 -60
103 - -70 -10 -70 -10
104 ->Dangle Energies: 5' X1 . 3'
105 -> 3' X2 Y 5'
106 ->Columns: Y = A, C, G, U
107 ->Rows = X1X2 = AU,CG,GC,UA,GU,UG
108 - -30 -10 -20 -20
109 - -20 -30 0 0
110 - -50 -30 -20 -10
111 - -30 -30 -40 -20
112 - -30 -10 -20 -20
113 - -30 -30 -40 -20
114 ->Multiloop terms: ALPHA_1, ALPHA_2, ALPHA_3
115 ->ML penalty = ALPHA_1 + s * ALPHA_2 + u *ALPHA_3
116 ->s = # stems adjacent to ML, u = unpaired bases in ML
117 - 340 40 0
118 ->AT_PENALTY:
119 ->Penalty for non GC pairs that terminate a helix
120 - 50
121 ->Interior Loops 1x1
122 ->CG..AU = 5'- C X A 3'
123 -> 3'- G Y U 5'
124 ->Rows: X = A C G U (X constant for a row)
125 ->Columns: Y = A C G U (Y constant in column)
126 -AU..AU
127 - 170 170 170 170
128 - 170 170 170 170
129 - 170 170 -40 170
130 - 170 170 170 150
131 -AU..CG
132 - 110 110 110 110
133 - 110 110 110 110
134 - 110 110 -100 110
135 - 110 110 110 100
136 -AU..GC
137 - 110 110 110 110
138 - 110 110 110 110
139 - 110 110 -100 110
140 - 110 110 110 110
141 -AU..UA
142 - 170 170 170 170
143 - 170 170 170 170
144 - 170 170 -40 170
145 - 170 170 170 120
146 -AU..GU
147 - 170 170 170 170
148 - 170 170 170 170
149 - 170 170 -40 170
150 - 170 170 170 170
151 -AU..UG
152 - 170 170 170 170
153 - 170 170 170 170
154 - 170 170 -40 170
155 - 170 170 170 170
156 -CG..AU
157 - 110 110 110 110
158 - 110 110 110 110
159 - 110 110 -100 110
160 - 110 110 110 110
161 -CG..CG
162 - 40 -40 40 40
163 - 30 50 40 50
164 - -10 40 -170 40
165 - 40 0 40 -30
166 -CG..GC
167 - 110 40 40 40
168 - 40 40 40 40
169 - 40 40 -140 40
170 - 40 40 40 40
171 -CG..UA
172 - 110 110 110 110
173 - 110 110 110 110
174 - 110 110 -100 110
175 - 110 110 110 110
176 -CG..GU
177 - 110 110 110 110
178 - 110 110 110 110
179 - 110 110 -100 110
180 - 110 110 110 110
181 -CG..UG
182 - 110 110 110 110
183 - 110 110 110 110
184 - 110 110 -100 110
185 - 110 110 110 110
186 -GC..AU
187 - 110 110 110 110
188 - 110 110 110 110
189 - 110 110 -100 110
190 - 110 110 110 110
191 -GC..CG
192 - 80 40 40 40
193 - 40 40 40 40
194 - 40 40 -210 40
195 - 40 40 40 -70
196 -GC..GC
197 - 40 30 -10 40
198 - -40 50 40 0
199 - 40 40 -170 40
200 - 40 50 40 -30
201 -GC..UA
202 - 110 110 110 110
203 - 110 110 110 110
204 - 110 110 -100 110
205 - 110 110 110 100
206 -GC..GU
207 - 110 110 110 110
208 - 110 110 110 110
209 - 110 110 -100 110
210 - 110 110 110 110
211 -GC..UG
212 - 110 110 110 110
213 - 110 110 110 110
214 - 110 110 -100 110
215 - 110 110 110 110
216 -UA..AU
217 - 170 170 170 170
218 - 170 170 170 170
219 - 170 170 -40 170
220 - 170 170 170 180
221 -UA..CG
222 - 110 110 110 110
223 - 110 110 110 110
224 - 110 110 -100 110
225 - 110 110 110 110
226 -UA..GC
227 - 110 110 110 110
228 - 110 110 110 110
229 - 110 110 -100 110
230 - 110 110 110 110
231 -UA..UA
232 - 170 170 170 170
233 - 170 170 170 170
234 - 170 170 -40 170
235 - 170 170 170 150
236 -UA..GU
237 - 170 170 170 170
238 - 170 170 170 170
239 - 170 170 -40 170
240 - 170 170 170 170
241 -UA..UG
242 - 170 170 170 170
243 - 170 170 170 170
244 - 170 170 -40 170
245 - 170 170 170 170
246 -GU..AU
247 - 170 170 170 170
248 - 170 170 170 170
249 - 170 170 -40 170
250 - 170 170 170 170
251 -GU..CG
252 - 110 110 110 110
253 - 110 110 110 110
254 - 110 110 -100 110
255 - 110 110 110 110
256 -GU..GC
257 - 110 110 110 110
258 - 110 110 110 110
259 - 110 110 -100 110
260 - 110 110 110 110
261 -GU..UA
262 - 170 170 170 170
263 - 170 170 170 170
264 - 170 170 -40 170
265 - 170 170 170 170
266 -GU..GU
267 - 170 170 170 170
268 - 170 170 170 170
269 - 170 170 -40 170
270 - 170 170 170 170
271 -GU..UG
272 - 170 170 170 170
273 - 170 170 170 170
274 - 170 170 -40 170
275 - 170 170 170 170
276 -UG..AU
277 - 170 170 170 170
278 - 170 170 170 170
279 - 170 170 -40 170
280 - 170 170 170 170
281 -UG..CG
282 - 110 110 110 110
283 - 110 110 110 110
284 - 110 110 -100 110
285 - 110 110 110 110
286 -UG..GC
287 - 110 110 110 110
288 - 110 110 110 110
289 - 110 110 -100 110
290 - 110 110 110 110
291 -UG..UA
292 - 170 170 170 170
293 - 170 170 170 170
294 - 170 170 -40 170
295 - 170 170 170 170
296 -UG..GU
297 - 170 170 170 170
298 - 170 170 170 170
299 - 170 170 -40 170
300 - 170 170 170 170
301 -UG..UG
302 - 170 170 170 170
303 - 170 170 170 170
304 - 170 170 -40 170
305 - 170 170 170 170
306 ->Interior Loops 2x2
307 ->CG.AG..AU = 5'- C A G A -3'
308 -> 3'- G Y X U -5'
309 ->Rows: X = A C G U (X constant for a row)
310 ->Columns: Y = A C G U (Y constant in column)
311 -AU.AA..AU
312 - 280 260 150 200
313 - 230 220 110 200
314 - 170 160 50 200
315 - 200 200 200 200
316 -AU.AC..AU
317 - 280 260 150 200
318 - 340 260 250 200
319 - 200 200 200 200
320 - 340 260 250 200
321 -AU.AG..AU
322 - 170 160 50 200
323 - 200 200 200 200
324 - 210 200 90 200
325 - 100 -20 50 200
326 -AU.AU..AU
327 - 200 200 200 200
328 - 310 230 220 200
329 - 220 110 180 200
330 - 290 180 250 200
331 -AU.CA..AU
332 - 250 310 200 310
333 - 210 200 200 200
334 - 150 240 200 240
335 - 200 200 200 200
336 -AU.CC..AU
337 - 250 250 200 250
338 - 250 250 200 250
339 - 200 200 200 200
340 - 250 250 200 250
341 -AU.CG..AU
342 - 150 240 200 240
343 - 200 200 200 200
344 - 190 240 200 240
345 - -30 70 200 70
346 -AU.CU..AU
347 - 200 200 200 200
348 - 220 220 200 220
349 - 100 190 200 190
350 - 170 160 200 160
351 -AU.GA..AU
352 - 150 200 210 230
353 - 110 200 160 90
354 - 50 200 100 210
355 - 200 200 200 200
356 -AU.GC..AU
357 - 150 200 210 130
358 - 250 200 270 230
359 - 200 200 200 200
360 - 250 200 270 230
361 -AU.GG..AU
362 - 50 200 100 210
363 - 200 200 200 200
364 - 90 200 140 170
365 - 50 200 30 -150
366 -AU.GU..AU
367 - 200 200 200 200
368 - 220 200 240 200
369 - 180 200 150 -20
370 - 250 200 220 230
371 -AU.UA..AU
372 - 200 310 130 270
373 - 200 200 -10 120
374 - 200 240 110 240
375 - 200 200 200 200
376 -AU.UC..AU
377 - 200 250 30 170
378 - 200 250 130 170
379 - 200 200 200 200
380 - 200 250 130 170
381 -AU.UG..AU
382 - 200 240 110 240
383 - 200 200 200 200
384 - 200 240 70 200
385 - 200 70 -250 70
386 -AU.UU..AU
387 - 200 200 200 200
388 - 200 220 100 140
389 - 200 190 -120 190
390 - 200 160 130 80
391 -AU.AA..CG
392 - 210 200 90 200
393 - 190 170 60 200
394 - 10 0 -110 200
395 - 200 200 200 200
396 -AU.AC..CG
397 - 180 170 60 200
398 - 250 170 160 200
399 - 200 200 200 200
400 - 150 70 70 200
401 -AU.AG..CG
402 - 70 60 -50 200
403 - 200 200 200 200
404 - 180 160 50 200
405 - 0 -120 -50 200
406 -AU.AU..CG
407 - 200 200 200 200
408 - 250 180 170 200
409 - 40 -80 -10 200
410 - 210 100 170 200
411 -AU.CA..CG
412 - 190 240 200 240
413 - 160 160 200 160
414 - -10 80 200 80
415 - 200 200 200 200
416 -AU.CC..CG
417 - 160 150 200 150
418 - 160 160 200 160
419 - 200 200 200 200
420 - 60 60 200 60
421 -AU.CG..CG
422 - 50 140 200 140
423 - 200 200 200 200
424 - 150 210 200 210
425 --130 -30 200 -30
426 -AU.CU..CG
427 - 200 200 200 200
428 - 170 160 200 160
429 - -90 10 200 10
430 - 90 80 200 80
431 -AU.GA..CG
432 - 90 200 140 170
433 - 60 200 120 40
434 --110 200 -60 50
435 - 200 200 200 200
436 -AU.GC..CG
437 - 60 200 110 40
438 - 160 200 180 140
439 - 200 200 200 200
440 - 70 200 80 50
441 -AU.GG..CG
442 - -50 200 0 110
443 - 200 200 200 200
444 - 50 200 110 130
445 - -50 200 -70 -250
446 -AU.GU..CG
447 - 200 200 200 200
448 - 170 200 180 150
449 - -10 200 -30 -210
450 - 170 200 140 150
451 -AU.UA..CG
452 - 200 240 70 200
453 - 200 160 -50 80
454 - 200 80 -50 80
455 - 200 200 200 200
456 -AU.UC..CG
457 - 200 150 -60 70
458 - 200 160 50 80
459 - 200 200 200 200
460 - 200 60 -50 -20
461 -AU.UG..CG
462 - 200 140 10 150
463 - 200 200 200 200
464 - 200 210 40 170
465 - 200 -30 -350 -30
466 -AU.UU..CG
467 - 200 200 200 200
468 - 200 160 50 80
469 - 200 10 -310 10
470 - 200 80 50 0
471 -AU.AA..GC
472 - 200 190 80 200
473 - 190 180 70 200
474 - 100 90 -20 200
475 - 200 200 200 200
476 -AU.AC..GC
477 - 240 220 110 200
478 - 280 210 200 200
479 - 200 200 200 200
480 - 270 190 180 200
481 -AU.AG..GC
482 - 100 90 -20 200
483 - 200 200 200 200
484 - 180 160 50 200
485 - 30 -80 -10 200
486 -AU.AU..GC
487 - 200 200 200 200
488 - 270 190 180 200
489 - 180 70 140 200
490 - 220 100 180 200
491 -AU.CA..GC
492 - 180 230 200 230
493 - 170 160 200 160
494 - 80 170 200 170
495 - 200 200 200 200
496 -AU.CC..GC
497 - 210 210 200 210
498 - 200 190 200 190
499 - 200 200 200 200
500 - 180 180 200 180
501 -AU.CG..GC
502 - 80 170 200 170
503 - 200 200 200 200
504 - 150 210 200 210
505 - -90 0 200 0
506 -AU.CU..GC
507 - 200 200 200 200
508 - 180 180 200 180
509 - 60 150 200 150
510 - 90 90 200 90
511 -AU.GA..GC
512 - 80 200 130 160
513 - 70 200 120 50
514 - -20 200 30 140
515 - 200 200 200 200
516 -AU.GC..GC
517 - 110 200 170 90
518 - 200 200 210 180
519 - 200 200 200 200
520 - 180 200 200 160
521 -AU.GG..GC
522 - -20 200 30 140
523 - 200 200 200 200
524 - 50 200 110 130
525 - -10 200 -40 -210
526 -AU.GU..GC
527 - 200 200 200 200
528 - 180 200 200 160
529 - 140 200 110 -60
530 - 180 200 150 160
531 -AU.UA..GC
532 - 200 230 60 190
533 - 200 160 -50 80
534 - 200 170 40 180
535 - 200 200 200 200
536 -AU.UC..GC
537 - 200 210 0 130
538 - 200 190 80 110
539 - 200 200 200 200
540 - 200 180 70 100
541 -AU.UG..GC
542 - 200 170 40 180
543 - 200 200 200 200
544 - 200 210 40 170
545 - 200 0 -310 0
546 -AU.UU..GC
547 - 200 200 200 200
548 - 200 180 70 100
549 - 200 150 -160 160
550 - 200 90 60 10
551 -AU.AA..UA
552 - 280 260 150 200
553 - 250 240 130 200
554 - 150 140 30 200
555 - 200 200 200 200
556 -AU.AC..UA
557 - 260 250 140 200
558 - 310 230 220 200
559 - 200 200 200 200
560 - 310 230 220 200
561 -AU.AG..UA
562 - 150 140 30 200
563 - 200 200 200 200
564 - 210 190 80 200
565 - 130 20 90 200
566 -AU.AU..UA
567 - 200 200 200 200
568 - 310 230 220 200
569 - 230 120 190 200
570 - 270 150 220 200
571 -AU.CA..UA
572 - 250 310 200 310
573 - 230 220 200 220
574 - 130 220 200 220
575 - 200 200 200 200
576 -AU.CC..UA
577 - 240 230 200 230
578 - 220 220 200 220
579 - 200 200 200 200
580 - 220 220 200 220
581 -AU.CG..UA
582 - 130 220 200 220
583 - 200 200 200 200
584 - 180 240 200 240
585 - 10 100 200 100
586 -AU.CU..UA
587 - 200 200 200 200
588 - 220 220 200 220
589 - 110 200 200 200
590 - 140 140 200 140
591 -AU.GA..UA
592 - 150 200 210 230
593 - 130 200 180 110
594 - 30 200 80 190
595 - 200 200 200 200
596 -AU.GC..UA
597 - 140 200 190 120
598 - 220 200 240 200
599 - 200 200 200 200
600 - 220 200 240 200
601 -AU.GG..UA
602 - 30 200 80 190
603 - 200 200 200 200
604 - 80 200 140 160
605 - 90 200 70 -110
606 -AU.GU..UA
607 - 200 200 200 200
608 - 220 200 240 200
609 - 190 200 160 -10
610 - 220 200 200 200
611 -AU.UA..UA
612 - 200 310 130 270
613 - 200 220 10 140
614 - 200 220 90 220
615 - 200 200 200 200
616 -AU.UC..UA
617 - 200 230 20 150
618 - 200 220 100 140
619 - 200 200 200 200
620 - 200 220 100 140
621 -AU.UG..UA
622 - 200 220 90 220
623 - 200 200 200 200
624 - 200 240 70 200
625 - 200 100 -210 110
626 -AU.UU..UA
627 - 200 200 200 200
628 - 200 220 100 140
629 - 200 200 -110 200
630 - 200 140 110 60
631 -AU.AA..GU
632 - 280 260 150 200
633 - 230 220 110 200
634 - 170 160 50 200
635 - 200 200 200 200
636 -AU.AC..GU
637 - 280 260 150 200
638 - 340 260 250 200
639 - 200 200 200 200
640 - 340 260 250 200
641 -AU.AG..GU
642 - 170 160 50 200
643 - 200 200 200 200
644 - 210 200 90 200
645 - 100 -20 50 200
646 -AU.AU..GU
647 - 200 200 200 200
648 - 310 230 220 200
649 - 220 110 180 200
650 - 290 180 250 200
651 -AU.CA..GU
652 - 250 310 200 310
653 - 210 200 200 200
654 - 150 240 200 240
655 - 200 200 200 200
656 -AU.CC..GU
657 - 250 250 200 250
658 - 250 250 200 250
659 - 200 200 200 200
660 - 250 250 200 250
661 -AU.CG..GU
662 - 150 240 200 240
663 - 200 200 200 200
664 - 190 240 200 240
665 - -30 70 200 70
666 -AU.CU..GU
667 - 200 200 200 200
668 - 220 220 200 220
669 - 100 190 200 190
670 - 170 160 200 160
671 -AU.GA..GU
672 - 150 200 210 230
673 - 110 200 160 90
674 - 50 200 100 210
675 - 200 200 200 200
676 -AU.GC..GU
677 - 150 200 210 130
678 - 250 200 270 230
679 - 200 200 200 200
680 - 250 200 270 230
681 -AU.GG..GU
682 - 50 200 100 210
683 - 200 200 200 200
684 - 90 200 140 170
685 - 50 200 30 -150
686 -AU.GU..GU
687 - 200 200 200 200
688 - 220 200 240 200
689 - 180 200 150 -20
690 - 250 200 220 230
691 -AU.UA..GU
692 - 200 310 130 270
693 - 200 200 -10 120
694 - 200 240 110 240
695 - 200 200 200 200
696 -AU.UC..GU
697 - 200 250 30 170
698 - 200 250 130 170
699 - 200 200 200 200
700 - 200 250 130 170
701 -AU.UG..GU
702 - 200 240 110 240
703 - 200 200 200 200
704 - 200 240 70 200
705 - 200 70 -250 70
706 -AU.UU..GU
707 - 200 200 200 200
708 - 200 220 100 140
709 - 200 190 -120 190
710 - 200 160 130 80
711 -AU.AA..UG
712 - 280 260 150 200
713 - 250 240 130 200
714 - 150 140 30 200
715 - 200 200 200 200
716 -AU.AC..UG
717 - 260 250 140 200
718 - 310 230 220 200
719 - 200 200 200 200
720 - 310 230 220 200
721 -AU.AG..UG
722 - 150 140 30 200
723 - 200 200 200 200
724 - 210 190 80 200
725 - 130 20 90 200
726 -AU.AU..UG
727 - 200 200 200 200
728 - 310 230 220 200
729 - 230 120 190 200
730 - 270 150 220 200
731 -AU.CA..UG
732 - 250 310 200 310
733 - 230 220 200 220
734 - 130 220 200 220
735 - 200 200 200 200
736 -AU.CC..UG
737 - 240 230 200 230
738 - 220 220 200 220
739 - 200 200 200 200
740 - 220 220 200 220
741 -AU.CG..UG
742 - 130 220 200 220
743 - 200 200 200 200
744 - 180 240 200 240
745 - 10 100 200 100
746 -AU.CU..UG
747 - 200 200 200 200
748 - 220 220 200 220
749 - 110 200 200 200
750 - 140 140 200 140
751 -AU.GA..UG
752 - 150 200 210 230
753 - 130 200 180 110
754 - 30 200 80 190
755 - 200 200 200 200
756 -AU.GC..UG
757 - 140 200 190 120
758 - 220 200 240 200
759 - 200 200 200 200
760 - 220 200 240 200
761 -AU.GG..UG
762 - 30 200 80 190
763 - 200 200 200 200
764 - 80 200 140 160
765 - 90 200 70 -110
766 -AU.GU..UG
767 - 200 200 200 200
768 - 220 200 240 200
769 - 190 200 160 -10
770 - 220 200 200 200
771 -AU.UA..UG
772 - 200 310 130 270
773 - 200 220 10 140
774 - 200 220 90 220
775 - 200 200 200 200
776 -AU.UC..UG
777 - 200 230 20 150
778 - 200 220 100 140
779 - 200 200 200 200
780 - 200 220 100 140
781 -AU.UG..UG
782 - 200 220 90 220
783 - 200 200 200 200
784 - 200 240 70 200
785 - 200 100 -210 110
786 -AU.UU..UG
787 - 200 200 200 200
788 - 200 220 100 140
789 - 200 200 -110 200
790 - 200 140 110 60
791 -CG.AA..AU
792 - 200 240 100 200
793 - 160 190 60 200
794 - 100 130 0 200
795 - 200 200 200 200
796 -CG.AC..AU
797 - 200 240 100 200
798 - 260 240 200 200
799 - 200 200 200 200
800 - 260 240 200 200
801 -CG.AG..AU
802 - 100 130 0 200
803 - 200 200 200 200
804 - 140 170 40 200
805 - 20 -40 0 200
806 -CG.AU..AU
807 - 200 200 200 200
808 - 230 210 170 200
809 - 150 80 130 200
810 - 220 150 200 200
811 -CG.CA..AU
812 - 190 280 200 270
813 - 150 180 200 160
814 - 90 220 200 200
815 - 200 200 200 200
816 -CG.CC..AU
817 - 190 220 200 210
818 - 190 220 200 210
819 - 200 200 200 200
820 - 190 220 200 210
821 -CG.CG..AU
822 - 90 220 200 200
823 - 200 200 200 200
824 - 130 220 200 200
825 - -90 40 200 30
826 -CG.CU..AU
827 - 200 200 200 200
828 - 160 190 200 180
829 - 40 170 200 150
830 - 110 140 200 120
831 -CG.GA..AU
832 - 100 200 180 180
833 - 60 200 130 40
834 - 0 200 70 160
835 - 200 200 200 200
836 -CG.GC..AU
837 - 100 200 180 80
838 - 200 200 240 180
839 - 200 200 200 200
840 - 200 200 240 180
841 -CG.GG..AU
842 - 0 200 70 160
843 - 200 200 200 200
844 - 40 200 110 120
845 - 0 200 0 -200
846 -CG.GU..AU
847 - 200 200 200 200
848 - 170 200 210 150
849 - 130 200 120 -70
850 - 200 200 190 180
851 -CG.UA..AU
852 - 200 270 30 220
853 - 200 160 -110 70
854 - 200 200 10 190
855 - 200 200 200 200
856 -CG.UC..AU
857 - 200 210 -70 120
858 - 200 210 30 120
859 - 200 200 200 200
860 - 200 210 30 120
861 -CG.UG..AU
862 - 200 200 10 190
863 - 200 200 200 200
864 - 200 200 -30 150
865 - 200 30 -350 20
866 -CG.UU..AU
867 - 200 200 200 200
868 - 200 180 0 90
869 - 200 150 -220 150
870 - 200 120 30 30
871 -CG.AA..CG
872 - 50 60 0 200
873 - 110 150 -70 200
874 - -30 10 -160 200
875 - 200 200 200 200
876 -CG.AC..CG
877 - 110 110 -100 200
878 - 170 150 -60 200
879 - 200 200 200 200
880 - 70 50 20 200
881 -CG.AG..CG
882 - 40 50 -70 200
883 - 200 200 200 200
884 - 100 140 0 200
885 - 10 -70 -80 200
886 -CG.AU..CG
887 - 200 200 200 200
888 - 180 150 120 200
889 - -50 -60 -60 200
890 - 150 0 90 200
891 -CG.CA..CG
892 - 130 220 200 200
893 - 100 130 200 120
894 - -70 70 200 40
895 - 200 200 200 200
896 -CG.CC..CG
897 - 100 190 200 110
898 - 100 130 200 120
899 - 200 200 200 200
900 - 0 30 200 170
901 -CG.CG..CG
902 - 70 70 200 100
903 - 200 200 200 200
904 - 90 180 200 170
905 --190 -30 200 -70
906 -CG.CU..CG
907 - 200 200 200 200
908 - 110 140 200 120
909 --150 -20 200 -30
910 - -20 -10 200 20
911 -CG.GA..CG
912 - -20 200 110 90
913 - -40 200 90 0
914 --170 200 -90 30
915 - 200 200 200 200
916 -CG.GC..CG
917 - 70 200 80 -10
918 - 110 200 150 100
919 - 200 200 200 200
920 - 20 200 50 0
921 -CG.GG..CG
922 - -50 200 -20 60
923 - 200 200 200 200
924 - 0 200 80 90
925 - -90 200 -100 -300
926 -CG.GU..CG
927 - 200 200 200 200
928 - 120 200 150 100
929 --130 200 -60 -240
930 - 90 200 110 60
931 -CG.UA..CG
932 - 200 200 -10 140
933 - 200 120 -160 30
934 - 200 40 -160 50
935 - 200 200 200 200
936 -CG.UC..CG
937 - 200 110 -160 30
938 - 200 120 -60 30
939 - 200 200 200 200
940 - 200 20 -160 10
941 -CG.UG..CG
942 - 200 50 -60 140
943 - 200 200 200 200
944 - 200 170 -70 120
945 - 200 -70 -440 -100
946 -CG.UU..CG
947 - 200 200 200 200
948 - 200 120 -50 30
949 - 200 -10 -410 10
950 - 200 40 -100 60
951 -CG.AA..GC
952 - 130 160 30 200
953 - 120 150 20 200
954 - 30 60 -70 200
955 - 200 200 200 200
956 -CG.AC..GC
957 - 160 200 60 200
958 - 210 180 150 200
959 - 200 200 200 200
960 - 190 170 130 200
961 -CG.AG..GC
962 - 30 60 -70 200
963 - 200 200 200 200
964 - 100 140 0 200
965 - -40 -110 -60 200
966 -CG.AU..GC
967 - 200 200 200 200
968 - 190 170 130 200
969 - 110 40 90 200
970 - 140 80 130 200
971 -CG.CA..GC
972 - 120 210 200 190
973 - 110 140 200 120
974 - 20 150 200 130
975 - 200 200 200 200
976 -CG.CC..GC
977 - 150 180 200 170
978 - 140 170 200 150
979 - 200 200 200 200
980 - 120 150 200 140
981 -CG.CG..GC
982 - 20 150 200 130
983 - 200 200 200 200
984 - 90 180 200 170
985 --150 -20 200 -40
986 -CG.CU..GC
987 - 200 200 200 200
988 - 120 150 200 140
989 - 0 130 200 110
990 - 30 60 200 50
991 -CG.GA..GC
992 - 30 200 100 110
993 - 20 200 90 0
994 - -70 200 0 90
995 - 200 200 200 200
996 -CG.GC..GC
997 - 60 200 140 40
998 - 150 200 180 130
999 - 200 200 200 200
1000 - 130 200 170 110
1001 -CG.GG..GC
1002 - -70 200 0 90
1003 - 200 200 200 200
1004 - 0 200 80 90
1005 - -60 200 -70 -260
1006 -CG.GU..GC
1007 - 200 200 200 200
1008 - 130 200 170 110
1009 - 90 200 90 -110
1010 - 130 200 120 110
1011 -CG.UA..GC
1012 - 200 190 -40 140
1013 - 200 120 -150 30
1014 - 200 130 -60 130
1015 - 200 200 200 200
1016 -CG.UC..GC
1017 - 200 170 -110 80
1018 - 200 150 -20 60
1019 - 200 200 200 200
1020 - 200 140 -40 50
1021 -CG.UG..GC
1022 - 200 130 -60 130
1023 - 200 200 200 200
1024 - 200 170 -70 120
1025 - 200 -40 -420 -50
1026 -CG.UU..GC
1027 - 200 200 200 200
1028 - 200 140 -40 50
1029 - 200 110 -260 110
1030 - 200 50 -50 -40
1031 -CG.AA..UA
1032 - 200 240 100 200
1033 - 180 210 80 200
1034 - 80 110 -20 200
1035 - 200 200 200 200
1036 -CG.AC..UA
1037 - 190 220 90 200
1038 - 230 210 170 200
1039 - 200 200 200 200
1040 - 230 210 170 200
1041 -CG.AG..UA
1042 - 80 110 -20 200
1043 - 200 200 200 200
1044 - 130 170 30 200
1045 - 60 0 40 200
1046 -CG.AU..UA
1047 - 200 200 200 200
1048 - 230 210 170 200
1049 - 160 90 140 200
1050 - 190 130 180 200
1051 -CG.CA..UA
1052 - 190 280 200 270
1053 - 170 200 200 180
1054 - 70 200 200 180
1055 - 200 200 200 200
1056 -CG.CC..UA
1057 - 180 210 200 190
1058 - 160 190 200 180
1059 - 200 200 200 200
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2809 - 40 -60 10 200
2810 - 210 110 190 200
2811 -UG.CA..CG
2812 - 170 270 200 240
2813 - 140 190 200 160
2814 - -30 110 200 80
2815 - 200 200 200 200
2816 -UG.CC..CG
2817 - 140 180 200 150
2818 - 140 190 200 160
2819 - 200 200 200 200
2820 - 40 90 200 60
2821 -UG.CG..CG
2822 - 30 170 200 140
2823 - 200 200 200 200
2824 - 130 240 200 210
2825 --150 0 200 -30
2826 -UG.CU..CG
2827 - 200 200 200 200
2828 - 150 190 200 160
2829 --110 40 200 10
2830 - 70 110 200 80
2831 -UG.GA..CG
2832 - 110 200 150 160
2833 - 80 200 120 30
2834 - -90 200 -50 40
2835 - 200 200 200 200
2836 -UG.GC..CG
2837 - 80 200 120 30
2838 - 180 200 180 130
2839 - 200 200 200 200
2840 - 90 200 80 40
2841 -UG.GG..CG
2842 - -30 200 10 100
2843 - 200 200 200 200
2844 - 70 200 110 120
2845 - -30 200 -70 -260
2846 -UG.GU..CG
2847 - 200 200 200 200
2848 - 190 200 190 140
2849 - 10 200 -30 -220
2850 - 190 200 150 140
2851 -UG.UA..CG
2852 - 200 270 30 230
2853 - 200 190 -90 100
2854 - 200 110 -90 110
2855 - 200 200 200 200
2856 -UG.UC..CG
2857 - 200 180 -100 100
2858 - 200 190 10 100
2859 - 200 200 200 200
2860 - 200 90 -90 0
2861 -UG.UG..CG
2862 - 200 170 -30 170
2863 - 200 200 200 200
2864 - 200 240 0 190
2865 - 200 0 -390 -10
2866 -UG.UU..CG
2867 - 200 200 200 200
2868 - 200 190 10 110
2869 - 200 40 -350 30
2870 - 200 110 10 30
2871 -UG.AA..GC
2872 - 200 200 100 200
2873 - 190 190 90 200
2874 - 100 100 0 200
2875 - 200 200 200 200
2876 -UG.AC..GC
2877 - 240 240 130 200
2878 - 280 220 220 200
2879 - 200 200 200 200
2880 - 270 210 200 200
2881 -UG.AG..GC
2882 - 100 100 0 200
2883 - 200 200 200 200
2884 - 180 180 70 200
2885 - 30 -70 10 200
2886 -UG.AU..GC
2887 - 200 200 200 200
2888 - 270 210 200 200
2889 - 180 80 160 200
2890 - 220 120 190 200
2891 -UG.CA..GC
2892 - 160 260 200 230
2893 - 150 190 200 160
2894 - 60 200 200 170
2895 - 200 200 200 200
2896 -UG.CC..GC
2897 - 190 240 200 210
2898 - 180 220 200 190
2899 - 200 200 200 200
2900 - 160 210 200 180
2901 -UG.CG..GC
2902 - 60 200 200 170
2903 - 200 200 200 200
2904 - 130 240 200 210
2905 --110 30 200 0
2906 -UG.CU..GC
2907 - 200 200 200 200
2908 - 160 210 200 180
2909 - 40 180 200 150
2910 - 70 120 200 90
2911 -UG.GA..GC
2912 - 100 200 140 150
2913 - 90 200 130 40
2914 - 0 200 40 130
2915 - 200 200 200 200
2916 -UG.GC..GC
2917 - 130 200 170 80
2918 - 220 200 220 170
2919 - 200 200 200 200
2920 - 200 200 200 150
2921 -UG.GG..GC
2922 - 0 200 40 130
2923 - 200 200 200 200
2924 - 70 200 110 120
2925 - 10 200 -30 -220
2926 -UG.GU..GC
2927 - 200 200 200 200
2928 - 200 200 200 150
2929 - 160 200 120 -70
2930 - 190 200 150 150
2931 -UG.UA..GC
2932 - 200 260 20 220
2933 - 200 190 -90 110
2934 - 200 200 0 200
2935 - 200 200 200 200
2936 -UG.UC..GC
2937 - 200 240 -40 150
2938 - 200 220 40 140
2939 - 200 200 200 200
2940 - 200 210 30 120
2941 -UG.UG..GC
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2943 - 200 200 200 200
2944 - 200 240 0 190
2945 - 200 30 -350 30
2946 -UG.UU..GC
2947 - 200 200 200 200
2948 - 200 210 30 120
2949 - 200 180 -200 180
2950 - 200 120 20 30
2951 -UG.AA..UA
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2953 - 250 250 150 200
2954 - 150 150 50 200
2955 - 200 200 200 200
2956 -UG.AC..UA
2957 - 260 260 160 200
2958 - 310 250 240 200
2959 - 200 200 200 200
2960 - 310 250 240 200
2961 -UG.AG..UA
2962 - 150 150 50 200
2963 - 200 200 200 200
2964 - 210 210 100 200
2965 - 130 30 110 200
2966 -UG.AU..UA
2967 - 200 200 200 200
2968 - 310 250 240 200
2969 - 230 130 210 200
2970 - 270 170 240 200
2971 -UG.CA..UA
2972 - 230 340 200 310
2973 - 210 250 200 220
2974 - 110 250 200 220
2975 - 200 200 200 200
2976 -UG.CC..UA
2977 - 220 260 200 230
2978 - 200 250 200 220
2979 - 200 200 200 200
2980 - 200 250 200 220
2981 -UG.CG..UA
2982 - 110 250 200 220
2983 - 200 200 200 200
2984 - 160 270 200 240
2985 - -10 130 200 100
2986 -UG.CU..UA
2987 - 200 200 200 200
2988 - 200 250 200 220
2989 - 90 230 200 200
2990 - 120 170 200 140
2991 -UG.GA..UA
2992 - 170 200 210 220
2993 - 150 200 190 100
2994 - 50 200 90 180
2995 - 200 200 200 200
2996 -UG.GC..UA
2997 - 160 200 200 110
2998 - 240 200 240 190
2999 - 200 200 200 200
3000 - 240 200 240 190
3001 -UG.GG..UA
3002 - 50 200 90 180
3003 - 200 200 200 200
3004 - 100 200 140 150
3005 - 110 200 70 -120
3006 -UG.GU..UA
3007 - 200 200 200 200
3008 - 240 200 240 190
3009 - 210 200 170 -20
3010 - 240 200 200 190
3011 -UG.UA..UA
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3013 - 200 250 -30 170
3014 - 200 250 50 250
3015 - 200 200 200 200
3016 -UG.UC..UA
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3018 - 200 250 70 160
3019 - 200 200 200 200
3020 - 200 250 70 160
3021 -UG.UG..UA
3022 - 200 250 50 250
3023 - 200 200 200 200
3024 - 200 270 30 220
3025 - 200 130 -250 130
3026 -UG.UU..UA
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3028 - 200 250 70 160
3029 - 200 230 -150 230
3030 - 200 170 70 80
3031 -UG.AA..GU
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3033 - 230 230 130 200
3034 - 170 170 70 200
3035 - 200 200 200 200
3036 -UG.AC..GU
3037 - 280 280 170 200
3038 - 340 280 270 200
3039 - 200 200 200 200
3040 - 340 280 270 200
3041 -UG.AG..GU
3042 - 170 170 70 200
3043 - 200 200 200 200
3044 - 210 210 110 200
3045 - 100 0 70 200
3046 -UG.AU..GU
3047 - 200 200 200 200
3048 - 310 250 240 200
3049 - 220 120 200 200
3050 - 290 190 270 200
3051 -UG.CA..GU
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3053 - 190 230 200 200
3054 - 130 270 200 240
3055 - 200 200 200 200
3056 -UG.CC..GU
3057 - 230 280 200 250
3058 - 230 280 200 250
3059 - 200 200 200 200
3060 - 230 280 200 250
3061 -UG.CG..GU
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3063 - 200 200 200 200
3064 - 170 270 200 240
3065 - -50 100 200 70
3066 -UG.CU..GU
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3068 - 200 250 200 220
3069 - 80 220 200 190
3070 - 150 190 200 160
3071 -UG.GA..GU
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3073 - 130 200 170 80
3074 - 70 200 110 200
3075 - 200 200 200 200
3076 -UG.GC..GU
3077 - 170 200 210 120
3078 - 270 200 270 220
3079 - 200 200 200 200
3080 - 270 200 270 220
3081 -UG.GG..GU
3082 - 70 200 110 200
3083 - 200 200 200 200
3084 - 110 200 150 160
3085 - 70 200 30 -160
3086 -UG.GU..GU
3087 - 200 200 200 200
3088 - 240 200 240 190
3089 - 200 200 160 -30
3090 - 270 200 230 220
3091 -UG.UA..GU
3092 - 200 340 100 290
3093 - 200 230 -50 150
3094 - 200 270 70 270
3095 - 200 200 200 200
3096 -UG.UC..GU
3097 - 200 280 0 190
3098 - 200 280 100 190
3099 - 200 200 200 200
3100 - 200 280 100 190
3101 -UG.UG..GU
3102 - 200 270 70 270
3103 - 200 200 200 200
3104 - 200 270 30 230
3105 - 200 100 -290 90
3106 -UG.UU..GU
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3108 - 200 250 70 160
3109 - 200 220 -160 220
3110 - 200 190 90 110
3111 -UG.AA..UG
3112 - 280 280 170 200
3113 - 250 250 150 200
3114 - 150 150 50 200
3115 - 200 200 200 200
3116 -UG.AC..UG
3117 - 260 260 160 200
3118 - 310 250 240 200
3119 - 200 200 200 200
3120 - 310 250 240 200
3121 -UG.AG..UG
3122 - 150 150 50 200
3123 - 200 200 200 200
3124 - 210 210 100 200
3125 - 130 30 110 200
3126 -UG.AU..UG
3127 - 200 200 200 200
3128 - 310 250 240 200
3129 - 230 130 210 200
3130 - 270 170 240 200
3131 -UG.CA..UG
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3133 - 210 250 200 220
3134 - 110 250 200 220
3135 - 200 200 200 200
3136 -UG.CC..UG
3137 - 220 260 200 230
3138 - 200 250 200 220
3139 - 200 200 200 200
3140 - 200 250 200 220
3141 -UG.CG..UG
3142 - 110 250 200 220
3143 - 200 200 200 200
3144 - 160 270 200 240
3145 - -10 130 200 100
3146 -UG.CU..UG
3147 - 200 200 200 200
3148 - 200 250 200 220
3149 - 90 230 200 200
3150 - 120 170 200 140
3151 -UG.GA..UG
3152 - 170 200 210 220
3153 - 150 200 190 100
3154 - 50 200 90 180
3155 - 200 200 200 200
3156 -UG.GC..UG
3157 - 160 200 200 110
3158 - 240 200 240 190
3159 - 200 200 200 200
3160 - 240 200 240 190
3161 -UG.GG..UG
3162 - 50 200 90 180
3163 - 200 200 200 200
3164 - 100 200 140 150
3165 - 110 200 70 -120
3166 -UG.GU..UG
3167 - 200 200 200 200
3168 - 240 200 240 190
3169 - 210 200 170 -20
3170 - 240 200 200 190
3171 -UG.UA..UG
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3173 - 200 250 -30 170
3174 - 200 250 50 250
3175 - 200 200 200 200
3176 -UG.UC..UG
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3178 - 200 250 70 160
3179 - 200 200 200 200
3180 - 200 250 70 160
3181 -UG.UG..UG
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3183 - 200 200 200 200
3184 - 200 270 30 220
3185 - 200 130 -250 130
3186 -UG.UU..UG
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3188 - 200 250 70 160
3189 - 200 230 -150 230
3190 - 200 170 70 80
3191 ->Interior Loops 1x2
3192 ->CG.A..AU = 5'- C A A -3'
3193 -> 3'- G Y X U -5'
3194 ->Rows: X = A C G U (X constant for a row)
3195 ->Columns: Y = A C G U (Y constant in column)
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3197 - 390 370 310 550
3198 - 360 320 310 550
3199 - 250 210 190 550
3200 - 550 550 550 550
3201 -AU.C..AU
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3203 - 370 400 550 370
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3205 - 400 340 550 370
3206 -AU.G..AU
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3208 - 550 550 550 550
3209 - 230 550 370 550
3210 - 550 550 550 550
3211 -AU.U..AU
3212 - 550 550 550 550
3213 - 550 370 550 280
3214 - 550 550 550 550
3215 - 550 320 550 270
3216 -AU.A..CG
3217 - 320 300 240 480
3218 - 290 250 240 480
3219 - 180 140 120 480
3220 - 480 480 480 480
3221 -AU.C..CG
3222 - 310 300 480 300
3223 - 300 330 480 300
3224 - 480 480 480 480
3225 - 330 270 480 300
3226 -AU.G..CG
3227 - 250 480 160 480
3228 - 480 480 480 480
3229 - 160 480 300 480
3230 - 480 480 480 480
3231 -AU.U..CG
3232 - 480 480 480 480
3233 - 480 300 480 210
3234 - 480 480 480 480
3235 - 480 250 480 200
3236 -AU.A..GC
3237 - 320 300 240 480
3238 - 290 250 240 480
3239 - 180 140 120 480
3240 - 480 480 480 480
3241 -AU.C..GC
3242 - 310 300 480 300
3243 - 300 330 480 300
3244 - 480 480 480 480
3245 - 330 270 480 300
3246 -AU.G..GC
3247 - 250 480 160 480
3248 - 480 480 480 480
3249 - 160 480 300 480
3250 - 480 480 480 480
3251 -AU.U..GC
3252 - 480 480 480 480
3253 - 480 300 480 210
3254 - 480 480 480 480
3255 - 480 250 480 200
3256 -AU.A..UA
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3258 - 360 320 310 550
3259 - 250 210 190 550
3260 - 550 550 550 550
3261 -AU.C..UA
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3263 - 370 400 550 370
3264 - 550 550 550 550
3265 - 400 340 550 370
3266 -AU.G..UA
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3268 - 550 550 550 550
3269 - 230 550 370 550
3270 - 550 550 550 550
3271 -AU.U..UA
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3273 - 550 370 550 280
3274 - 550 550 550 550
3275 - 550 320 550 270
3276 -AU.A..GU
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3278 - 360 320 310 550
3279 - 250 210 190 550
3280 - 550 550 550 550
3281 -AU.C..GU
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3283 - 370 400 550 370
3284 - 550 550 550 550
3285 - 400 340 550 370
3286 -AU.G..GU
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3288 - 550 550 550 550
3289 - 230 550 370 550
3290 - 550 550 550 550
3291 -AU.U..GU
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3294 - 550 550 550 550
3295 - 550 320 550 270
3296 -AU.A..UG
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3298 - 360 320 310 550
3299 - 250 210 190 550
3300 - 550 550 550 550
3301 -AU.C..UG
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3303 - 370 400 550 370
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3305 - 400 340 550 370
3306 -AU.G..UG
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3308 - 550 550 550 550
3309 - 230 550 370 550
3310 - 550 550 550 550
3311 -AU.U..UG
3312 - 550 550 550 550
3313 - 550 370 550 280
3314 - 550 550 550 550
3315 - 550 320 550 270
3316 -CG.A..AU
3317 - 320 300 240 480
3318 - 290 250 240 480
3319 - 180 140 120 480
3320 - 480 480 480 480
3321 -CG.C..AU
3322 - 310 300 480 300
3323 - 300 330 480 300
3324 - 480 480 480 480
3325 - 330 270 480 300
3326 -CG.G..AU
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3328 - 480 480 480 480
3329 - 160 480 300 480
3330 - 480 480 480 480
3331 -CG.U..AU
3332 - 480 480 480 480
3333 - 480 300 480 210
3334 - 480 480 480 480
3335 - 480 250 480 200
3336 -CG.A..CG
3337 - 230 220 110 400
3338 - 210 170 160 400
3339 - 80 60 40 400
3340 - 400 400 400 400
3341 -CG.C..CG
3342 - 230 220 400 220
3343 - 220 250 400 220
3344 - 400 400 400 400
3345 - 250 190 400 220
3346 -CG.G..CG
3347 - 170 400 80 400
3348 - 400 400 400 400
3349 - 80 400 220 400
3350 - 400 400 400 400
3351 -CG.U..CG
3352 - 400 400 400 400
3353 - 400 220 400 150
3354 - 400 400 400 400
3355 - 400 170 400 120
3356 -CG.A..GC
3357 - 240 220 160 400
3358 - 210 170 160 400
3359 - 100 60 40 400
3360 - 400 400 400 400
3361 -CG.C..GC
3362 - 230 220 400 220
3363 - 220 250 400 220
3364 - 400 400 400 400
3365 - 250 190 400 220
3366 -CG.G..GC
3367 - 170 400 80 400
3368 - 400 400 400 400
3369 - 80 400 220 400
3370 - 400 400 400 400
3371 -CG.U..GC
3372 - 400 400 400 400
3373 - 400 220 400 130
3374 - 400 400 400 400
3375 - 400 170 400 120
3376 -CG.A..UA
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3378 - 290 250 240 480
3379 - 180 140 120 480
3380 - 480 480 480 480
3381 -CG.C..UA
3382 - 310 300 480 300
3383 - 300 330 480 300
3384 - 480 480 480 480
3385 - 330 270 480 300
3386 -CG.G..UA
3387 - 250 480 160 480
3388 - 480 480 480 480
3389 - 160 480 300 480
3390 - 480 480 480 480
3391 -CG.U..UA
3392 - 480 480 480 480
3393 - 480 300 480 210
3394 - 480 480 480 480
3395 - 480 250 480 200
3396 -CG.A..GU
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3398 - 290 250 240 480
3399 - 180 140 120 480
3400 - 480 480 480 480
3401 -CG.C..GU
3402 - 310 300 480 300
3403 - 300 330 480 300
3404 - 480 480 480 480
3405 - 330 270 480 300
3406 -CG.G..GU
3407 - 250 480 160 480
3408 - 480 480 480 480
3409 - 160 480 300 480
3410 - 480 480 480 480
3411 -CG.U..GU
3412 - 480 480 480 480
3413 - 480 300 480 210
3414 - 480 480 480 480
3415 - 480 250 480 200
3416 -CG.A..UG
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3418 - 290 250 240 480
3419 - 180 140 120 480
3420 - 480 480 480 480
3421 -CG.C..UG
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3423 - 300 330 480 300
3424 - 480 480 480 480
3425 - 330 270 480 300
3426 -CG.G..UG
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3428 - 480 480 480 480
3429 - 160 480 300 480
3430 - 480 480 480 480
3431 -CG.U..UG
3432 - 480 480 480 480
3433 - 480 300 480 210
3434 - 480 480 480 480
3435 - 480 250 480 200
3436 -GC.A..AU
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3438 - 290 250 240 480
3439 - 180 140 120 480
3440 - 480 480 480 480
3441 -GC.C..AU
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3443 - 300 330 480 300
3444 - 480 480 480 480
3445 - 330 270 480 300
3446 -GC.G..AU
3447 - 250 480 160 480
3448 - 480 480 480 480
3449 - 160 480 300 480
3450 - 480 480 480 480
3451 -GC.U..AU
3452 - 480 480 480 480
3453 - 480 300 480 210
3454 - 480 480 480 480
3455 - 480 250 480 200
3456 -GC.A..CG
3457 - 240 220 160 400
3458 - 210 170 160 400
3459 - 100 60 40 400
3460 - 400 400 400 400
3461 -GC.C..CG
3462 - 230 220 400 220
3463 - 220 250 400 220
3464 - 400 400 400 400
3465 - 250 190 400 220
3466 -GC.G..CG
3467 - 170 400 80 400
3468 - 400 400 400 400
3469 - 80 400 220 400
3470 - 400 400 400 400
3471 -GC.U..CG
3472 - 400 400 400 400
3473 - 400 220 400 130
3474 - 400 400 400 400
3475 - 400 170 400 120
3476 -GC.A..GC
3477 - 250 220 210 400
3478 - 210 170 160 400
3479 - 120 60 40 400
3480 - 400 400 400 400
3481 -GC.C..GC
3482 - 230 220 400 220
3483 - 220 250 400 220
3484 - 400 400 400 400
3485 - 250 190 400 220
3486 -GC.G..GC
3487 - 170 400 80 400
3488 - 400 400 400 400
3489 - 80 400 220 400
3490 - 400 400 400 400
3491 -GC.U..GC
3492 - 400 400 400 400
3493 - 400 220 400 120
3494 - 400 400 400 400
3495 - 400 170 400 120
3496 -GC.A..UA
3497 - 320 300 240 480
3498 - 290 250 240 480
3499 - 180 140 120 480
3500 - 480 480 480 480
3501 -GC.C..UA
3502 - 310 300 480 300
3503 - 300 330 480 300
3504 - 480 480 480 480
3505 - 330 270 480 300
3506 -GC.G..UA
3507 - 250 480 160 480
3508 - 480 480 480 480
3509 - 160 480 300 480
3510 - 480 480 480 480
3511 -GC.U..UA
3512 - 480 480 480 480
3513 - 480 300 480 210
3514 - 480 480 480 480
3515 - 480 250 480 200
3516 -GC.A..GU
3517 - 320 300 240 480
3518 - 290 250 240 480
3519 - 180 140 120 480
3520 - 480 480 480 480
3521 -GC.C..GU
3522 - 310 300 480 300
3523 - 300 330 480 300
3524 - 480 480 480 480
3525 - 330 270 480 300
3526 -GC.G..GU
3527 - 250 480 160 480
3528 - 480 480 480 480
3529 - 160 480 300 480
3530 - 480 480 480 480
3531 -GC.U..GU
3532 - 480 480 480 480
3533 - 480 300 480 210
3534 - 480 480 480 480
3535 - 480 250 480 200
3536 -GC.A..UG
3537 - 320 300 240 480
3538 - 290 250 240 480
3539 - 180 140 120 480
3540 - 480 480 480 480
3541 -GC.C..UG
3542 - 310 300 480 300
3543 - 300 330 480 300
3544 - 480 480 480 480
3545 - 330 270 480 300
3546 -GC.G..UG
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3548 - 480 480 480 480
3549 - 160 480 300 480
3550 - 480 480 480 480
3551 -GC.U..UG
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3553 - 480 300 480 210
3554 - 480 480 480 480
3555 - 480 250 480 200
3556 -UA.A..AU
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3558 - 360 320 310 550
3559 - 250 210 190 550
3560 - 550 550 550 550
3561 -UA.C..AU
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3563 - 370 400 550 370
3564 - 550 550 550 550
3565 - 400 340 550 370
3566 -UA.G..AU
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3568 - 550 550 550 550
3569 - 230 550 370 550
3570 - 550 550 550 550
3571 -UA.U..AU
3572 - 550 550 550 550
3573 - 550 370 550 280
3574 - 550 550 550 550
3575 - 550 320 550 270
3576 -UA.A..CG
3577 - 320 300 240 480
3578 - 290 250 240 480
3579 - 180 140 120 480
3580 - 480 480 480 480
3581 -UA.C..CG
3582 - 310 300 480 300
3583 - 300 330 480 300
3584 - 480 480 480 480
3585 - 330 270 480 300
3586 -UA.G..CG
3587 - 250 480 160 480
3588 - 480 480 480 480
3589 - 160 480 300 480
3590 - 480 480 480 480
3591 -UA.U..CG
3592 - 480 480 480 480
3593 - 480 300 480 210
3594 - 480 480 480 480
3595 - 480 250 480 200
3596 -UA.A..GC
3597 - 320 300 240 480
3598 - 290 250 240 480
3599 - 180 140 120 480
3600 - 480 480 480 480
3601 -UA.C..GC
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3603 - 300 330 480 300
3604 - 480 480 480 480
3605 - 330 270 480 300
3606 -UA.G..GC
3607 - 250 480 160 480
3608 - 480 480 480 480
3609 - 160 480 300 480
3610 - 480 480 480 480
3611 -UA.U..GC
3612 - 480 480 480 480
3613 - 480 300 480 210
3614 - 480 480 480 480
3615 - 480 250 480 200
3616 -UA.A..UA
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3618 - 360 320 310 550
3619 - 250 210 190 550
3620 - 550 550 550 550
3621 -UA.C..UA
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3623 - 370 400 550 370
3624 - 550 550 550 550
3625 - 400 340 550 370
3626 -UA.G..UA
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3628 - 550 550 550 550
3629 - 230 550 370 550
3630 - 550 550 550 550
3631 -UA.U..UA
3632 - 550 550 550 550
3633 - 550 370 550 280
3634 - 550 550 550 550
3635 - 550 320 550 270
3636 -UA.A..GU
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3638 - 360 320 310 550
3639 - 250 210 190 550
3640 - 550 550 550 550
3641 -UA.C..GU
3642 - 380 370 550 370
3643 - 370 400 550 370
3644 - 550 550 550 550
3645 - 400 340 550 370
3646 -UA.G..GU
3647 - 320 550 230 550
3648 - 550 550 550 550
3649 - 230 550 370 550
3650 - 550 550 550 550
3651 -UA.U..GU
3652 - 550 550 550 550
3653 - 550 370 550 280
3654 - 550 550 550 550
3655 - 550 320 550 270
3656 -UA.A..UG
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3658 - 360 320 310 550
3659 - 250 210 190 550
3660 - 550 550 550 550
3661 -UA.C..UG
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3663 - 370 400 550 370
3664 - 550 550 550 550
3665 - 400 340 550 370
3666 -UA.G..UG
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3668 - 550 550 550 550
3669 - 230 550 370 550
3670 - 550 550 550 550
3671 -UA.U..UG
3672 - 550 550 550 550
3673 - 550 370 550 280
3674 - 550 550 550 550
3675 - 550 320 550 270
3676 -GU.A..AU
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3678 - 360 320 310 550
3679 - 250 210 190 550
3680 - 550 550 550 550
3681 -GU.C..AU
3682 - 380 370 550 370
3683 - 370 400 550 370
3684 - 550 550 550 550
3685 - 400 340 550 370
3686 -GU.G..AU
3687 - 320 550 230 550
3688 - 550 550 550 550
3689 - 230 550 370 550
3690 - 550 550 550 550
3691 -GU.U..AU
3692 - 550 550 550 550
3693 - 550 370 550 280
3694 - 550 550 550 550
3695 - 550 320 550 270
3696 -GU.A..CG
3697 - 320 300 240 480
3698 - 290 250 240 480
3699 - 180 140 120 480
3700 - 480 480 480 480
3701 -GU.C..CG
3702 - 310 300 480 300
3703 - 300 330 480 300
3704 - 480 480 480 480
3705 - 330 270 480 300
3706 -GU.G..CG
3707 - 250 480 160 480
3708 - 480 480 480 480
3709 - 160 480 300 480
3710 - 480 480 480 480
3711 -GU.U..CG
3712 - 480 480 480 480
3713 - 480 300 480 210
3714 - 480 480 480 480
3715 - 480 250 480 200
3716 -GU.A..GC
3717 - 320 300 240 480
3718 - 290 250 240 480
3719 - 180 140 120 480
3720 - 480 480 480 480
3721 -GU.C..GC
3722 - 310 300 480 300
3723 - 300 330 480 300
3724 - 480 480 480 480
3725 - 330 270 480 300
3726 -GU.G..GC
3727 - 250 480 160 480
3728 - 480 480 480 480
3729 - 160 480 300 480
3730 - 480 480 480 480
3731 -GU.U..GC
3732 - 480 480 480 480
3733 - 480 300 480 210
3734 - 480 480 480 480
3735 - 480 250 480 200
3736 -GU.A..UA
3737 - 390 370 310 550
3738 - 360 320 310 550
3739 - 250 210 190 550
3740 - 550 550 550 550
3741 -GU.C..UA
3742 - 380 370 550 370
3743 - 370 400 550 370
3744 - 550 550 550 550
3745 - 400 340 550 370
3746 -GU.G..UA
3747 - 320 550 230 550
3748 - 550 550 550 550
3749 - 230 550 370 550
3750 - 550 550 550 550
3751 -GU.U..UA
3752 - 550 550 550 550
3753 - 550 370 550 280
3754 - 550 550 550 550
3755 - 550 320 550 270
3756 -GU.A..GU
3757 - 390 370 310 550
3758 - 360 320 310 550
3759 - 250 210 190 550
3760 - 550 550 550 550
3761 -GU.C..GU
3762 - 380 370 550 370
3763 - 370 400 550 370
3764 - 550 550 550 550
3765 - 400 340 550 370
3766 -GU.G..GU
3767 - 320 550 230 550
3768 - 550 550 550 550
3769 - 230 550 370 550
3770 - 550 550 550 550
3771 -GU.U..GU
3772 - 550 550 550 550
3773 - 550 370 550 280
3774 - 550 550 550 550
3775 - 550 320 550 270
3776 -GU.A..UG
3777 - 390 370 310 550
3778 - 360 320 310 550
3779 - 250 210 190 550
3780 - 550 550 550 550
3781 -GU.C..UG
3782 - 380 370 550 370
3783 - 370 400 550 370
3784 - 550 550 550 550
3785 - 400 340 550 370
3786 -GU.G..UG
3787 - 320 550 230 550
3788 - 550 550 550 550
3789 - 230 550 370 550
3790 - 550 550 550 550
3791 -GU.U..UG
3792 - 550 550 550 550
3793 - 550 370 550 280
3794 - 550 550 550 550
3795 - 550 320 550 270
3796 -UG.A..AU
3797 - 390 370 310 550
3798 - 360 320 310 550
3799 - 250 210 190 550
3800 - 550 550 550 550
3801 -UG.C..AU
3802 - 380 370 550 370
3803 - 370 400 550 370
3804 - 550 550 550 550
3805 - 400 340 550 370
3806 -UG.G..AU
3807 - 320 550 230 550
3808 - 550 550 550 550
3809 - 230 550 370 550
3810 - 550 550 550 550
3811 -UG.U..AU
3812 - 550 550 550 550
3813 - 550 370 550 280
3814 - 550 550 550 550
3815 - 550 320 550 270
3816 -UG.A..CG
3817 - 320 300 240 480
3818 - 290 250 240 480
3819 - 180 140 120 480
3820 - 480 480 480 480
3821 -UG.C..CG
3822 - 310 300 480 300
3823 - 300 330 480 300
3824 - 480 480 480 480
3825 - 330 270 480 300
3826 -UG.G..CG
3827 - 250 480 160 480
3828 - 480 480 480 480
3829 - 160 480 300 480
3830 - 480 480 480 480
3831 -UG.U..CG
3832 - 480 480 480 480
3833 - 480 300 480 210
3834 - 480 480 480 480
3835 - 480 250 480 200
3836 -UG.A..GC
3837 - 320 300 240 480
3838 - 290 250 240 480
3839 - 180 140 120 480
3840 - 480 480 480 480
3841 -UG.C..GC
3842 - 310 300 480 300
3843 - 300 330 480 300
3844 - 480 480 480 480
3845 - 330 270 480 300
3846 -UG.G..GC
3847 - 250 480 160 480
3848 - 480 480 480 480
3849 - 160 480 300 480
3850 - 480 480 480 480
3851 -UG.U..GC
3852 - 480 480 480 480
3853 - 480 300 480 210
3854 - 480 480 480 480
3855 - 480 250 480 200
3856 -UG.A..UA
3857 - 390 370 310 550
3858 - 360 320 310 550
3859 - 250 210 190 550
3860 - 550 550 550 550
3861 -UG.C..UA
3862 - 380 370 550 370
3863 - 370 400 550 370
3864 - 550 550 550 550
3865 - 400 340 550 370
3866 -UG.G..UA
3867 - 320 550 230 550
3868 - 550 550 550 550
3869 - 230 550 370 550
3870 - 550 550 550 550
3871 -UG.U..UA
3872 - 550 550 550 550
3873 - 550 370 550 280
3874 - 550 550 550 550
3875 - 550 320 550 270
3876 -UG.A..GU
3877 - 390 370 310 550
3878 - 360 320 310 550
3879 - 250 210 190 550
3880 - 550 550 550 550
3881 -UG.C..GU
3882 - 380 370 550 370
3883 - 370 400 550 370
3884 - 550 550 550 550
3885 - 400 340 550 370
3886 -UG.G..GU
3887 - 320 550 230 550
3888 - 550 550 550 550
3889 - 230 550 370 550
3890 - 550 550 550 550
3891 -UG.U..GU
3892 - 550 550 550 550
3893 - 550 370 550 280
3894 - 550 550 550 550
3895 - 550 320 550 270
3896 -UG.A..UG
3897 - 390 370 310 550
3898 - 360 320 310 550
3899 - 250 210 190 550
3900 - 550 550 550 550
3901 -UG.C..UG
3902 - 380 370 550 370
3903 - 370 400 550 370
3904 - 550 550 550 550
3905 - 400 340 550 370
3906 -UG.G..UG
3907 - 320 550 230 550
3908 - 550 550 550 550
3909 - 230 550 370 550
3910 - 550 550 550 550
3911 -UG.U..UG
3912 - 550 550 550 550
3913 - 550 370 550 280
3914 - 550 550 550 550
3915 - 550 320 550 270
3916 ->POLYC - Penalty for poly C hairpins.
3917 ->First number is penalty for polyC triloop
3918 ->Second number is "slope", i.e. penalty per C in a non triloop
3919 ->Third number is "intercept", i.e. constant penalty for non triloops
3920 - 140 30 160
3921 ->BETA - Pseudoknot energy parameters. B1 B2 B3 B1M B1P
3922 ->B1 = Constant penalty for "open" pseudoknot
3923 ->B2 = penalty per pair in pseudoknot
3924 ->B3 = penalty per base in pseudoknot
3925 ->B1M = constant penalty for pseudoknot in a "closed" loop
3926 ->B1P = constant penalty for pseudoknot in a pseudoknot.
3927 - 960 10 10 1500 1500
3928 ->BIMOLECULAR //TINOCO, 277
3929 - 409
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