nupack_design_constants.h
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#ifndef __NUPACK_DESIGN_CONSTANTS_H__
#define __NUPACK_DESIGN_CONSTANTS_H__
#define NUPACK_DEF_TEMPERATURE 310.15
#define NUPACK_DEF_SODIUM 1.0
#define NUPACK_DEF_MAGNESIUM 0.00
#define NUPACK_DEF_MIN_PPAIR 0.00001
#define NUPACK_DEF_M_RESEED 50
#define NUPACK_DEF_M_BAD 300
#define NUPACK_DEF_M_REOPT 3
#define NUPACK_DEF_F_SPLIT 0.99
#define NUPACK_DEF_F_PASSIVE 0.01
#define NUPACK_DEF_F_STRINGENT 0.99
#define NUPACK_DEF_F_REDECOMP 0.03
#define NUPACK_DEF_F_REFOCUS 0.03
#define NUPACK_DEF_GC_INIT_PROB 0.50
#define NUPACK_DEF_MATERIAL RNA
#define NUPACK_DEF_DANGLE_TYPE 1
#define NUPACK_DEF_USE_LONG_HELIX 0
#define NUPACK_DEF_SEED 0
#define NUPACK_DEF_H_SPLIT_RNA 2
#define NUPACK_DEF_H_SPLIT_OTHER 3
#define NUPACK_DEF_H_SPLIT 2
#define NUPACK_DEF_N_SPLIT 12
#define NUPACK_DEF_POPULATION 1
#define NUPACK_DEF_ALLOW_MISMATCH false
#define NUPACK_DEF_ALLOW_WOBBLE false
#define NUPACK_DEF_MAX_PRINT_STEPS 1
#define NUPACK_DEF_DISABLE_DEFECT_WEIGHTS false
#define NUPACK_DEF_DISABLE_FOCUS false
#define NUPACK_DEF_FORBID_SPLITS true
#define NUPACK_DEF_REDECOMPOSE false
#define NUPACK_DEF_WORD_LEN 4
#define NUPACK_DEF_STOP 0.01
#define NUPACK_DEF_BONUS_PER_SPLIT -25
#endif