globals.html
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<div id="projectname">C-RCPred
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<div id="projectbrief">Multi-objective algorithm for interactive prediction of RNA complexes</div>
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<div class="contents">
<div class="textblock">Here is a list of all file members with links to the files they belong to:</div>
<h3><a id="index_a" name="index_a"></a>- a -</h3><ul>
<li>addBp() : <a class="el" href="extract__user__ct_8cpp.html#a3154475dd9afae247cea24192993f6b7">extract_user_ct.cpp</a></li>
<li>addHairLoop() : <a class="el" href="extract__user__ct_8cpp.html#a3836ce2d46f7951ade31f2a88da278bb">extract_user_ct.cpp</a></li>
<li>addHardCt() : <a class="el" href="graph_8h.html#aecd2a3f25ee89137358ab0729f15bc56">graph.h</a></li>
<li>addHelix() : <a class="el" href="extract__user__ct_8cpp.html#a5f65d8c4e79483ff21e185bdb3c2b475">extract_user_ct.cpp</a></li>
<li>addIntLoop() : <a class="el" href="extract__user__ct_8cpp.html#a386c4414462282b6271570c636f4f7d7">extract_user_ct.cpp</a></li>
<li>addMultiLoop() : <a class="el" href="extract__user__ct_8cpp.html#a32716a4cc0c656abd50593696e7674a8">extract_user_ct.cpp</a></li>
<li>addPseudo() : <a class="el" href="extract__user__ct_8cpp.html#aabf042f5e6b02ccef8e3b24bdd5b4480">extract_user_ct.cpp</a></li>
<li>addSingle() : <a class="el" href="extract__user__ct_8cpp.html#a239ca785524751ea4280dde791d390a4">extract_user_ct.cpp</a></li>
<li>app() : <a class="el" href="utils_8h.html#a11ced1de3cc2c6862e65dfc3e2d070a9">utils.h</a>, <a class="el" href="utils_8cpp.html#ab4c0994c733de215b0400d2cd52ce53b">utils.cpp</a></li>
<li>areLinked() : <a class="el" href="graph_8cpp.html#a0caf9b0af7daa4c5e5c193324048e8b8">graph.cpp</a>, <a class="el" href="graph_8h.html#a0caf9b0af7daa4c5e5c193324048e8b8">graph.h</a></li>
<li>ARG_DOUBLE : <a class="el" href="RNAeval__cmdl_8c.html#a4f1d7c5deedd24946fe7d57a04f47ab7ac6595ea97a5746cf60e1b3a102bb5f15">RNAeval_cmdl.c</a></li>
<li>ARG_FLAG : <a class="el" href="RNAeval__cmdl_8c.html#a4f1d7c5deedd24946fe7d57a04f47ab7afd135f03243c33991ef507f4410718f7">RNAeval_cmdl.c</a></li>
<li>ARG_INT : <a class="el" href="RNAeval__cmdl_8c.html#a4f1d7c5deedd24946fe7d57a04f47ab7a58393752406d163205fa18f450909993">RNAeval_cmdl.c</a></li>
<li>ARG_LONG : <a class="el" href="RNAeval__cmdl_8c.html#a4f1d7c5deedd24946fe7d57a04f47ab7a58aeaf6c82542f49c19b65c9df7fc26f">RNAeval_cmdl.c</a></li>
<li>ARG_NO : <a class="el" href="RNAeval__cmdl_8c.html#a4f1d7c5deedd24946fe7d57a04f47ab7a67dd250fb3e23862523b667407868ada">RNAeval_cmdl.c</a></li>
<li>ARG_STRING : <a class="el" href="RNAeval__cmdl_8c.html#a4f1d7c5deedd24946fe7d57a04f47ab7a1e0904ee5e3baf2aa4070ab0718a3afa">RNAeval_cmdl.c</a></li>
</ul>
<h3><a id="index_c" name="index_c"></a>- c -</h3><ul>
<li>checkBasePairIndex() : <a class="el" href="extract__user__ct_8cpp.html#ae3c7e34e8202677b1ae8fe82a0b29c55">extract_user_ct.cpp</a></li>
<li>checkIC() : <a class="el" href="utils_8cpp.html#ad5b6d38abcbabf6189484e616925f564">utils.cpp</a>, <a class="el" href="utils_8h.html#ad5b6d38abcbabf6189484e616925f564">utils.h</a></li>
<li>checkIndex() : <a class="el" href="extract__user__ct_8cpp.html#aef7114d5f2428892f810cb09abb166bd">extract_user_ct.cpp</a></li>
<li>checkLength() : <a class="el" href="extract__user__ct_8cpp.html#a806d35863fe3f0f3dbc4f20fe8adc752">extract_user_ct.cpp</a></li>
<li>compatible() : <a class="el" href="graph_8cpp.html#acfddc7c98f76667067ec4a5b2dec930b">graph.cpp</a>, <a class="el" href="graph_8h.html#acfddc7c98f76667067ec4a5b2dec930b">graph.h</a></li>
<li>convertCliquesToComplexes() : <a class="el" href="main_8cpp.html#a7b6fbaca11cd77c6729930c058643ee7">main.cpp</a></li>
</ul>
<h3><a id="index_d" name="index_d"></a>- d -</h3><ul>
<li>del() : <a class="el" href="main_8cpp.html#a1a0142a2f2bfa535082302223819ca11">main.cpp</a></li>
<li>dominate() : <a class="el" href="utils_8cpp.html#a92b74083ba8d0442e679402494be7b9a">utils.cpp</a>, <a class="el" href="utils_8h.html#a92b74083ba8d0442e679402494be7b9a">utils.h</a></li>
</ul>
<h3><a id="index_e" name="index_e"></a>- e -</h3><ul>
<li>ENERGY : <a class="el" href="solinteraction_8cpp.html#a6ec2827e60bea659213d70d14de002be">solinteraction.cpp</a></li>
<li>extract_ct() : <a class="el" href="extract__user__ct_8cpp.html#a211007685ec227810241add28a50b154">extract_user_ct.cpp</a></li>
<li>extract_probing() : <a class="el" href="extract__probing__data_8cpp.html#a005c699439539fa301c34f1deb7c1ac2">extract_probing_data.cpp</a></li>
</ul>
<h3><a id="index_f" name="index_f"></a>- f -</h3><ul>
<li>find_bp() : <a class="el" href="utils_8cpp.html#a4f195329eb82bb1544fc2ba0f50c833a">utils.cpp</a>, <a class="el" href="utils_8h.html#a4f195329eb82bb1544fc2ba0f50c833a">utils.h</a></li>
<li>find_bp_with_i() : <a class="el" href="utils_8cpp.html#af511215e4fa18a1e2c5f632e6fc7565c">utils.cpp</a>, <a class="el" href="utils_8h.html#af511215e4fa18a1e2c5f632e6fc7565c">utils.h</a></li>
<li>find_i_at_first() : <a class="el" href="utils_8cpp.html#a95656b6c5c0836954ceb14daa3c307c7">utils.cpp</a>, <a class="el" href="utils_8h.html#a95656b6c5c0836954ceb14daa3c307c7">utils.h</a></li>
<li>find_i_at_first_int() : <a class="el" href="utils_8cpp.html#ae68794605e161dec92280e67f845a6c1">utils.cpp</a>, <a class="el" href="utils_8h.html#ae68794605e161dec92280e67f845a6c1">utils.h</a></li>
<li>find_i_at_second() : <a class="el" href="utils_8cpp.html#ae91a995ffbe51b0563e38ecb50cf759d">utils.cpp</a>, <a class="el" href="utils_8h.html#ae91a995ffbe51b0563e38ecb50cf759d">utils.h</a></li>
<li>find_i_at_second_int() : <a class="el" href="utils_8cpp.html#ad11b242ca31d4d5c96241bfc7856719b">utils.cpp</a>, <a class="el" href="utils_8h.html#ad11b242ca31d4d5c96241bfc7856719b">utils.h</a></li>
<li>FIX_UNUSED : <a class="el" href="RNAeval__cmdl_8c.html#a8db449d7b07c45ef8a58716e09eba04e">RNAeval_cmdl.c</a></li>
</ul>
<h3><a id="index_h" name="index_h"></a>- h -</h3><ul>
<li>helix : <a class="el" href="structure_8h.html#ae45e3c7d70e960c6de4363cb1b8671e1">structure.h</a></li>
<li>helixI : <a class="el" href="solinteraction_8h.html#ae4107325e38baf4c16afbb0383c9087c">solinteraction.h</a></li>
</ul>
<h3><a id="index_j" name="index_j"></a>- j -</h3><ul>
<li>join() : <a class="el" href="utils_8cpp.html#a294939ac6cd477e6d1548da6ad9e83a3">utils.cpp</a>, <a class="el" href="utils_8h.html#a294939ac6cd477e6d1548da6ad9e83a3">utils.h</a></li>
</ul>
<h3><a id="index_l" name="index_l"></a>- l -</h3><ul>
<li>Lmax : <a class="el" href="predictor_8cpp.html#a88eb0916e71e392bb9e1c1cd7fc3e0a9">predictor.cpp</a></li>
<li>Lo : <a class="el" href="predictor_8cpp.html#a6ab76a505dd3f28ed5ac87cbb3af960d">predictor.cpp</a></li>
</ul>
<h3><a id="index_m" name="index_m"></a>- m -</h3><ul>
<li>main() : <a class="el" href="energy_8c.html#a0ddf1224851353fc92bfbff6f499fa97">energy.c</a>, <a class="el" href="main_8cpp.html#a0ddf1224851353fc92bfbff6f499fa97">main.cpp</a></li>
<li>modelGraph() : <a class="el" href="graph_8cpp.html#a03ecc0c993f22d8279f5284aca8b6429">graph.cpp</a>, <a class="el" href="graph_8h.html#a03ecc0c993f22d8279f5284aca8b6429">graph.h</a></li>
</ul>
<h3><a id="index_n" name="index_n"></a>- n -</h3><ul>
<li>no_argument : <a class="el" href="RNAeval__cmdl_8c.html#a3bc1d5f667b5b4ca4b4abb685dc874ce">RNAeval_cmdl.c</a></li>
<li>NONOPTION_P : <a class="el" href="RNAeval__cmdl_8c.html#a71ceb8911d64b39b402041ba5ea8453c">RNAeval_cmdl.c</a></li>
</ul>
<h3><a id="index_o" name="index_o"></a>- o -</h3><ul>
<li>optional_argument : <a class="el" href="RNAeval__cmdl_8c.html#acca06c0a947656bd8b395bf1084ffb72">RNAeval_cmdl.c</a></li>
<li>outputCliques() : <a class="el" href="main_8cpp.html#abb73d30144f459bf72dac88153935361">main.cpp</a></li>
</ul>
<h3><a id="index_p" name="index_p"></a>- p -</h3><ul>
<li>phi : <a class="el" href="predictor_8cpp.html#a9b19dbe31c869ebea6ac9ea6f058f4a1">predictor.cpp</a></li>
</ul>
<h3><a id="index_r" name="index_r"></a>- r -</h3><ul>
<li>removeClashes() : <a class="el" href="main_8cpp.html#a332465d0dce7f99f33365ce4b40e5345">main.cpp</a></li>
<li>required_argument : <a class="el" href="RNAeval__cmdl_8c.html#a6ece8d8dfa8378778f7290fdaba5b8bc">RNAeval_cmdl.c</a></li>
<li>RNAeval_args_info_description : <a class="el" href="RNAeval__cmdl_8h.html#acb1e1b4d6eac9cb3e118d11ab93aac5a">RNAeval_cmdl.h</a>, <a class="el" href="RNAeval__cmdl_8c.html#acb1e1b4d6eac9cb3e118d11ab93aac5a">RNAeval_cmdl.c</a></li>
<li>RNAeval_args_info_detailed_help : <a class="el" href="RNAeval__cmdl_8c.html#aabe0ac5395e8a7258be66f1dd9a23bec">RNAeval_cmdl.c</a>, <a class="el" href="RNAeval__cmdl_8h.html#aabe0ac5395e8a7258be66f1dd9a23bec">RNAeval_cmdl.h</a></li>
<li>RNAeval_args_info_full_help : <a class="el" href="RNAeval__cmdl_8c.html#ac594744e57311c235e32b208af48127f">RNAeval_cmdl.c</a>, <a class="el" href="RNAeval__cmdl_8h.html#a85eaeb8cdf6351c7c3185394d284d2d2">RNAeval_cmdl.h</a></li>
<li>RNAeval_args_info_help : <a class="el" href="RNAeval__cmdl_8c.html#a883a1a647460af5a5eb118db97bbb390">RNAeval_cmdl.c</a>, <a class="el" href="RNAeval__cmdl_8h.html#a4a8c5ef8637bebf36ed587ae42ed7083">RNAeval_cmdl.h</a></li>
<li>RNAeval_args_info_purpose : <a class="el" href="RNAeval__cmdl_8c.html#abfd13230a1c1e482216031f6453feda4">RNAeval_cmdl.c</a>, <a class="el" href="RNAeval__cmdl_8h.html#abfd13230a1c1e482216031f6453feda4">RNAeval_cmdl.h</a></li>
<li>RNAeval_args_info_usage : <a class="el" href="RNAeval__cmdl_8c.html#a6392ad8b2b33f67f599166b7044584b0">RNAeval_cmdl.c</a>, <a class="el" href="RNAeval__cmdl_8h.html#a6392ad8b2b33f67f599166b7044584b0">RNAeval_cmdl.h</a></li>
<li>RNAeval_args_info_versiontext : <a class="el" href="RNAeval__cmdl_8c.html#a730c846924d0b02048e5721961a8cb61">RNAeval_cmdl.c</a></li>
<li>RNAeval_cmdline_parser() : <a class="el" href="RNAeval__cmdl_8c.html#ae5f9a760b2fbe9a988dec2d84fc765ff">RNAeval_cmdl.c</a>, <a class="el" href="RNAeval__cmdl_8h.html#ae5f9a760b2fbe9a988dec2d84fc765ff">RNAeval_cmdl.h</a></li>
<li>RNAeval_cmdline_parser2() : <a class="el" href="RNAeval__cmdl_8c.html#a8fe34537afac077bd34a9b40400b74ee">RNAeval_cmdl.c</a>, <a class="el" href="RNAeval__cmdl_8h.html#a8fe34537afac077bd34a9b40400b74ee">RNAeval_cmdl.h</a></li>
<li>RNAeval_cmdline_parser_arg_type : <a class="el" href="RNAeval__cmdl_8c.html#a4f1d7c5deedd24946fe7d57a04f47ab7">RNAeval_cmdl.c</a></li>
<li>RNAeval_cmdline_parser_dump() : <a class="el" href="RNAeval__cmdl_8c.html#a48ae92f779fb5172c3032d784cce9a4e">RNAeval_cmdl.c</a>, <a class="el" href="RNAeval__cmdl_8h.html#a48ae92f779fb5172c3032d784cce9a4e">RNAeval_cmdl.h</a></li>
<li>RNAeval_cmdline_parser_ext() : <a class="el" href="RNAeval__cmdl_8h.html#ad4eac04eb1e714e131b9c1e5082f7057">RNAeval_cmdl.h</a>, <a class="el" href="RNAeval__cmdl_8c.html#ad4eac04eb1e714e131b9c1e5082f7057">RNAeval_cmdl.c</a></li>
<li>RNAeval_cmdline_parser_file_save() : <a class="el" href="RNAeval__cmdl_8c.html#abdcd7e1007514b89b54b2688c7ff55f8">RNAeval_cmdl.c</a>, <a class="el" href="RNAeval__cmdl_8h.html#abdcd7e1007514b89b54b2688c7ff55f8">RNAeval_cmdl.h</a></li>
<li>RNAeval_cmdline_parser_free() : <a class="el" href="RNAeval__cmdl_8c.html#a93f0d550b7c8510359d2de0b9276db2a">RNAeval_cmdl.c</a>, <a class="el" href="RNAeval__cmdl_8h.html#a93f0d550b7c8510359d2de0b9276db2a">RNAeval_cmdl.h</a></li>
<li>RNAeval_cmdline_parser_init() : <a class="el" href="RNAeval__cmdl_8c.html#a29709b24c1f4502f2cb65b9aa66965cf">RNAeval_cmdl.c</a>, <a class="el" href="RNAeval__cmdl_8h.html#a29709b24c1f4502f2cb65b9aa66965cf">RNAeval_cmdl.h</a></li>
<li>RNAEVAL_CMDLINE_PARSER_PACKAGE : <a class="el" href="RNAeval__cmdl_8h.html#a2ee223408f18ef1fb9bbde30d2ab836b">RNAeval_cmdl.h</a></li>
<li>RNAEVAL_CMDLINE_PARSER_PACKAGE_NAME : <a class="el" href="RNAeval__cmdl_8h.html#ac3f721f11ccd8698ade90002b0fb05a3">RNAeval_cmdl.h</a></li>
<li>RNAeval_cmdline_parser_params_create() : <a class="el" href="RNAeval__cmdl_8c.html#abe28593776a3526b6c7d29447d61ff94">RNAeval_cmdl.c</a>, <a class="el" href="RNAeval__cmdl_8h.html#abe28593776a3526b6c7d29447d61ff94">RNAeval_cmdl.h</a></li>
<li>RNAeval_cmdline_parser_params_init() : <a class="el" href="RNAeval__cmdl_8h.html#a2a15299c6ec21a53e36f4d0a670a5dda">RNAeval_cmdl.h</a>, <a class="el" href="RNAeval__cmdl_8c.html#a2a15299c6ec21a53e36f4d0a670a5dda">RNAeval_cmdl.c</a></li>
<li>RNAeval_cmdline_parser_print_detailed_help() : <a class="el" href="RNAeval__cmdl_8c.html#a8e04fb299e9451405ee48d09eac4c26f">RNAeval_cmdl.c</a>, <a class="el" href="RNAeval__cmdl_8h.html#a8e04fb299e9451405ee48d09eac4c26f">RNAeval_cmdl.h</a></li>
<li>RNAeval_cmdline_parser_print_full_help() : <a class="el" href="RNAeval__cmdl_8c.html#acadb7d809b2f351c4fbb9047aaec88ee">RNAeval_cmdl.c</a>, <a class="el" href="RNAeval__cmdl_8h.html#acadb7d809b2f351c4fbb9047aaec88ee">RNAeval_cmdl.h</a></li>
<li>RNAeval_cmdline_parser_print_help() : <a class="el" href="RNAeval__cmdl_8c.html#ad6eddfcb0966a71d1f17def8ce711cf9">RNAeval_cmdl.c</a>, <a class="el" href="RNAeval__cmdl_8h.html#ad6eddfcb0966a71d1f17def8ce711cf9">RNAeval_cmdl.h</a></li>
<li>RNAeval_cmdline_parser_print_version() : <a class="el" href="RNAeval__cmdl_8c.html#a258366e7f708785d2b922dbc5f2a4c32">RNAeval_cmdl.c</a>, <a class="el" href="RNAeval__cmdl_8h.html#a258366e7f708785d2b922dbc5f2a4c32">RNAeval_cmdl.h</a></li>
<li>RNAeval_cmdline_parser_required() : <a class="el" href="RNAeval__cmdl_8c.html#a213e33c5a0a76e5299524e2bbb281d0d">RNAeval_cmdl.c</a>, <a class="el" href="RNAeval__cmdl_8h.html#a213e33c5a0a76e5299524e2bbb281d0d">RNAeval_cmdl.h</a></li>
<li>RNAEVAL_CMDLINE_PARSER_VERSION : <a class="el" href="RNAeval__cmdl_8h.html#aa20e1a0ad234eebe322c0057e81e6bec">RNAeval_cmdl.h</a></li>
</ul>
<h3><a id="index_u" name="index_u"></a>- u -</h3><ul>
<li>usage() : <a class="el" href="main_8cpp.html#a2ef30c42cbc289d899a8be5d2d8f77d0">main.cpp</a></li>
</ul>
<h3><a id="index_v" name="index_v"></a>- v -</h3><ul>
<li>VF : <a class="el" href="rna_8cpp.html#ae8c47ef991d29814e7ebe7be9725a35f">rna.cpp</a></li>
<li>VVF : <a class="el" href="rna_8cpp.html#a3896909496dd0365dc9a3c6d1c6dc0e9">rna.cpp</a></li>
</ul>
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