Louis BECQUEY / RNANet

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Louis BECQUEY
04f27675 1 parent 30c7b86f

3D alignments archival issue solved

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Showing 1 changed file with 3 additions and 0 deletions
...@@ -1575,6 +1575,9 @@ class Pipeline: ...@@ -1575,6 +1575,9 @@ class Pipeline:
1575 1575
1576 # gather the alignments 1576 # gather the alignments
1577 os.makedirs(path_to_seq_data + "realigned/3d_only", exist_ok=True) 1577 os.makedirs(path_to_seq_data + "realigned/3d_only", exist_ok=True)
1578 + for f in os.listdir(path_to_seq_data + "realigned"):
1579 + if "3d_only.afa" in f:
1580 + subprocess.run(["cp", path_to_seq_data + "realigned/" + f, path_to_seq_data + "realigned/3d_only"])
1578 subprocess.run(["cp", path_to_seq_data + "realigned/*_3d_only.afa", path_to_seq_data + "realigned/3d_only" ]) 1581 subprocess.run(["cp", path_to_seq_data + "realigned/*_3d_only.afa", path_to_seq_data + "realigned/3d_only" ])
1579 subprocess.run(["rm", "-f", runDir + f"/archive/RNANET_alignments_latest.tar.gz"]) 1582 subprocess.run(["rm", "-f", runDir + f"/archive/RNANET_alignments_latest.tar.gz"])
1580 subprocess.run(["tar", "-C", path_to_seq_data + "realigned/3d_only" , "-czf", runDir + f"/archive/RNANET_alignments_latest.tar.gz", "."]) 1583 subprocess.run(["tar", "-C", path_to_seq_data + "realigned/3d_only" , "-czf", runDir + f"/archive/RNANET_alignments_latest.tar.gz", "."])
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