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/
RNANet
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Authored by
Louis BECQUEY
2021-08-17 19:31:37 +0200
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1eae2e9c0cedd145518ae689b445a956037803d5
1eae2e9c
1 parent
8038ee37
Fix: command line arguments to pass to cmalign and stats
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6 additions
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6 deletions
RNAnet.py
RNAnet.py
View file @
1eae2e9
...
...
@@ -1225,12 +1225,12 @@ class Pipeline:
path_to_seq_data
+
"realigned"
,
path_to_seq_data
+
"rfam_sequences"
])
self
.
REUSE_ALL
=
True
elif
opt
==
"cmalign-opts"
:
self
.
ALIGNOPTS
=
arg
elif
opt
==
"cmalign-rrna-opts"
:
self
.
RRNAALIGNOPTS
=
" "
.
split
(
arg
)
elif
opt
==
"stats-opts"
:
self
.
STATSOPTS
=
" "
.
split
(
arg
)
elif
opt
==
"
--
cmalign-opts"
:
self
.
ALIGNOPTS
=
arg
.
split
(
" "
)
elif
opt
==
"
--
cmalign-rrna-opts"
:
self
.
RRNAALIGNOPTS
=
arg
.
split
(
" "
)
elif
opt
==
"
--
stats-opts"
:
self
.
STATSOPTS
=
arg
.
split
(
" "
)
elif
opt
==
"--all"
:
self
.
REUSE_ALL
=
True
self
.
USE_KNOWN_ISSUES
=
False
...
...
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