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Louis BECQUEY
/
RNANet
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Authored by
Louis BECQUEY
2021-01-28 16:00:03 +0100
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Commit
693d73e7bc6a9481441495863daedfd2c3966d55
693d73e7
1 parent
d0371fa5
typo in Jan 2021 update
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2 additions
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2 deletions
RNAnet.py
scripts/automate.sh
RNAnet.py
View file @
693d73e
...
...
@@ -2501,7 +2501,7 @@ def work_pssm_remap(f, fill_gaps):
many
=
True
,
data
=
re_mappings
)
# Delete alignment columns that are not used anymore from the database
current_family_columns
=
[
x
[
0
]
for
x
in
sql_ask_database
(
conn
,
f
"SELECT index_ali FROM align_column WHERE rfam_acc = {f}
"
;
)]
current_family_columns
=
[
x
[
0
]
for
x
in
sql_ask_database
(
conn
,
f
"SELECT index_ali FROM align_column WHERE rfam_acc = {f}
;"
)]
unused
=
[]
for
col
in
current_family_columns
:
if
col
not
in
columns_to_save
:
...
...
scripts/automate.sh
View file @
693d73e
...
...
@@ -4,7 +4,7 @@ cd /home/lbecquey/Projects/RNANet
rm -rf latest_run.log errors.txt
# Run RNANet
bash -c
'time python3.8 /RNAnet.py --3d-folder /home/lbecquey/Data/RNA/3D/ --seq-folder /home/lbecquey/Data/RNA/sequences/ -r 20.0 --extract -s --archive'
> latest_run.log 2>&1
bash -c
'time python3.8
.
/RNAnet.py --3d-folder /home/lbecquey/Data/RNA/3D/ --seq-folder /home/lbecquey/Data/RNA/sequences/ -r 20.0 --extract -s --archive'
> latest_run.log 2>&1
echo
'Compressing RNANet.db.gz...'
>> latest_run.log
touch results/RNANet.db
# update last modification date
gzip -k /home/lbecquey/Projects/RNANet/results/RNANet.db
# compress it
...
...
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