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11 additions
and
7 deletions
... | @@ -1203,8 +1203,8 @@ class Pipeline: | ... | @@ -1203,8 +1203,8 @@ class Pipeline: |
1203 | 1203 | ||
1204 | # Run statistics files | 1204 | # Run statistics files |
1205 | os.chdir(runDir) | 1205 | os.chdir(runDir) |
1206 | - subprocess.run(["python3", "regression.py"]) | 1206 | + subprocess.run(["python3.8", "regression.py"]) |
1207 | - subprocess.run(["python3", "statistics.py", path_to_3D_data, path_to_seq_data]) | 1207 | + subprocess.run(["python3.8", "statistics.py", path_to_3D_data, path_to_seq_data]) |
1208 | 1208 | ||
1209 | # Save additional informations | 1209 | # Save additional informations |
1210 | conn = sqlite3.connect(runDir+"/results/RNANet.db") | 1210 | conn = sqlite3.connect(runDir+"/results/RNANet.db") |
... | @@ -1309,8 +1309,11 @@ def warn(message, error=False): | ... | @@ -1309,8 +1309,11 @@ def warn(message, error=False): |
1309 | # Cut if too long | 1309 | # Cut if too long |
1310 | if len(message)>66: | 1310 | if len(message)>66: |
1311 | x = message.find(' ', 50, 66) | 1311 | x = message.find(' ', 50, 66) |
1312 | - warn(message[:x], error=error) | 1312 | + if x != -1: |
1313 | - warn(message[x+1:], error=error) | 1313 | + warn(message[:x], error=error) |
1314 | + warn(message[x+1:], error=error) | ||
1315 | + else: | ||
1316 | + warn(message[:x], error=error) | ||
1314 | return | 1317 | return |
1315 | 1318 | ||
1316 | if error: | 1319 | if error: |
... | @@ -2011,9 +2014,10 @@ def work_pssm(f, fill_gaps): | ... | @@ -2011,9 +2014,10 @@ def work_pssm(f, fill_gaps): |
2011 | re_mappings += new_mappings | 2014 | re_mappings += new_mappings |
2012 | 2015 | ||
2013 | except ValueError: | 2016 | except ValueError: |
2014 | - with open(runDir + "/errors.txt", "a") as errf: | 2017 | + # with open(runDir + "/errors.txt", "a") as errf: |
2015 | - errf.write(f"Chain {s.id} not found in list of chains to process. ignoring.\n") | 2018 | + # errf.write(f"Chain {s.id} not found in list of chains to process. ignoring.\n") |
2016 | - | 2019 | + pass |
2020 | + | ||
2017 | pbar.update(1) | 2021 | pbar.update(1) |
2018 | pbar.close() | 2022 | pbar.close() |
2019 | 2023 | ... | ... |
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