Louis BECQUEY / RNANet

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Louis BECQUEY
7d8de5ad 1 parent 0ec3d1cf

timestamp for archive

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Showing 2 changed files with 6 additions and 1 deletions
...@@ -1559,8 +1559,10 @@ class Pipeline: ...@@ -1559,8 +1559,10 @@ class Pipeline:
1559 1559
1560 if self.ARCHIVE: 1560 if self.ARCHIVE:
1561 os.makedirs(runDir + "/archive", exist_ok=True) 1561 os.makedirs(runDir + "/archive", exist_ok=True)
1562 + datestr = time.strftime('%Y%m%d')
1562 subprocess.run(["tar", "-C", path_to_3D_data + "/datapoints", "-czf", 1563 subprocess.run(["tar", "-C", path_to_3D_data + "/datapoints", "-czf",
1563 - runDir + f"/archive/RNANET_datapoints_{time.strftime('%Y%m%d')}.tar.gz", "."]) 1564 + runDir + f"/archive/RNANET_datapoints_{datestr}.tar.gz", "."])
1565 + subprocess.run(["ln", "-S", runDir + f"/archive/RNANET_datapoints_{datestr}.tar.gz", runDir + f"/archive/RNANET_datapoints_latest.tar.gz"])
1564 1566
1565 def sanitize_database(self): 1567 def sanitize_database(self):
1566 """Searches for issues in the database and correct them""" 1568 """Searches for issues in the database and correct them"""
......
...@@ -19,6 +19,9 @@ cp /home/lbecquey/Projects/RNANet/results/frequencies.csv /home/lbecquey/Project ...@@ -19,6 +19,9 @@ cp /home/lbecquey/Projects/RNANet/results/frequencies.csv /home/lbecquey/Project
19 cp /home/lbecquey/Projects/RNANet/results/pair_types.csv /home/lbecquey/Projects/RNANet/archive/pair_types_latest.csv 19 cp /home/lbecquey/Projects/RNANet/results/pair_types.csv /home/lbecquey/Projects/RNANet/archive/pair_types_latest.csv
20 mv /home/lbecquey/Projects/RNANet/results/RNANet.db.gz /home/lbecquey/Projects/RNANet/archive/ 20 mv /home/lbecquey/Projects/RNANet/results/RNANet.db.gz /home/lbecquey/Projects/RNANet/archive/
21 21
22 +# Init Seafile synchronization between RNANet library and ./archive/ folder (just the first time !)
23 +# seaf-cli sync -l 8e082c6e-b9ed-4b2f-9279-de2177134c57 -s https://entrepot.ibisc.univ-evry.fr -u l****.b*****y@univ-evry.fr -p ****************** -d archive/
24 +
22 # Sync in Seafile 25 # Sync in Seafile
23 seaf-cli start >> latest_run.log 2>&1 26 seaf-cli start >> latest_run.log 2>&1
24 echo 'Waiting 10m for SeaFile synchronization...' >> latest_run.log 27 echo 'Waiting 10m for SeaFile synchronization...' >> latest_run.log
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