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... | @@ -81,7 +81,7 @@ Update runs are much quicker, around 3 hours. It depends mostly on what RNA fami | ... | @@ -81,7 +81,7 @@ Update runs are much quicker, around 3 hours. It depends mostly on what RNA fami |
81 | * Step 1 : Download the [Docker container](https://entrepot.ibisc.univ-evry.fr/f/e5edece989884a7294a6/?dl=1). Open a terminal and move to the appropriate directory. | 81 | * Step 1 : Download the [Docker container](https://entrepot.ibisc.univ-evry.fr/f/e5edece989884a7294a6/?dl=1). Open a terminal and move to the appropriate directory. |
82 | * Step 2 : Extract the archive to a Docker image named *rnanet* in your local installation | 82 | * Step 2 : Extract the archive to a Docker image named *rnanet* in your local installation |
83 | ``` | 83 | ``` |
84 | -$ docker image import rnanet_v1.2_docker.tar rnanet | 84 | +$ docker load -i rnanet_v1.2_docker.tar |
85 | ``` | 85 | ``` |
86 | * Step 3 : Run the container, giving it 3 folders to mount as volumes: a first to store the 3D data, a second to store the sequence data and alignments, and a third to output the results, data and logs: | 86 | * Step 3 : Run the container, giving it 3 folders to mount as volumes: a first to store the 3D data, a second to store the sequence data and alignments, and a third to output the results, data and logs: |
87 | ``` | 87 | ``` | ... | ... |
... | @@ -1203,7 +1203,7 @@ class Pipeline: | ... | @@ -1203,7 +1203,7 @@ class Pipeline: |
1203 | if self.HOMOLOGY: | 1203 | if self.HOMOLOGY: |
1204 | self.known_issues = [ x[:-1] for x in issues.readlines() if '-' in x ] | 1204 | self.known_issues = [ x[:-1] for x in issues.readlines() if '-' in x ] |
1205 | else: | 1205 | else: |
1206 | - self.known_issues = [ x[:-1] for x in issues.readlines() id not '-' in x ] | 1206 | + self.known_issues = [ x[:-1] for x in issues.readlines() if not '-' in x ] |
1207 | if self.USE_KNOWN_ISSUES: | 1207 | if self.USE_KNOWN_ISSUES: |
1208 | print("\t> Ignoring known issues:") | 1208 | print("\t> Ignoring known issues:") |
1209 | print(" ".join(self.known_issues") | 1209 | print(" ".join(self.known_issues") | ... | ... |
... | @@ -15,7 +15,7 @@ cp `which x3dna-dssr` $THISDIR | ... | @@ -15,7 +15,7 @@ cp `which x3dna-dssr` $THISDIR |
15 | 15 | ||
16 | ######################################################## Build Docker image ###################################################### | 16 | ######################################################## Build Docker image ###################################################### |
17 | # Execute the Dockerfile and build the image | 17 | # Execute the Dockerfile and build the image |
18 | -docker build -t persalteas/rnanet .. | 18 | +docker build -t rnanet:latest .. |
19 | 19 | ||
20 | ############################################################## Cleaning ########################################################## | 20 | ############################################################## Cleaning ########################################################## |
21 | rm x3dna-dssr | 21 | rm x3dna-dssr | ... | ... |
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