Louis BECQUEY

docker tag to latest by default

...@@ -81,7 +81,7 @@ Update runs are much quicker, around 3 hours. It depends mostly on what RNA fami ...@@ -81,7 +81,7 @@ Update runs are much quicker, around 3 hours. It depends mostly on what RNA fami
81 * Step 1 : Download the [Docker container](https://entrepot.ibisc.univ-evry.fr/f/e5edece989884a7294a6/?dl=1). Open a terminal and move to the appropriate directory. 81 * Step 1 : Download the [Docker container](https://entrepot.ibisc.univ-evry.fr/f/e5edece989884a7294a6/?dl=1). Open a terminal and move to the appropriate directory.
82 * Step 2 : Extract the archive to a Docker image named *rnanet* in your local installation 82 * Step 2 : Extract the archive to a Docker image named *rnanet* in your local installation
83 ``` 83 ```
84 -$ docker image import rnanet_v1.2_docker.tar rnanet 84 +$ docker load -i rnanet_v1.2_docker.tar
85 ``` 85 ```
86 * Step 3 : Run the container, giving it 3 folders to mount as volumes: a first to store the 3D data, a second to store the sequence data and alignments, and a third to output the results, data and logs: 86 * Step 3 : Run the container, giving it 3 folders to mount as volumes: a first to store the 3D data, a second to store the sequence data and alignments, and a third to output the results, data and logs:
87 ``` 87 ```
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...@@ -1203,7 +1203,7 @@ class Pipeline: ...@@ -1203,7 +1203,7 @@ class Pipeline:
1203 if self.HOMOLOGY: 1203 if self.HOMOLOGY:
1204 self.known_issues = [ x[:-1] for x in issues.readlines() if '-' in x ] 1204 self.known_issues = [ x[:-1] for x in issues.readlines() if '-' in x ]
1205 else: 1205 else:
1206 - self.known_issues = [ x[:-1] for x in issues.readlines() id not '-' in x ] 1206 + self.known_issues = [ x[:-1] for x in issues.readlines() if not '-' in x ]
1207 if self.USE_KNOWN_ISSUES: 1207 if self.USE_KNOWN_ISSUES:
1208 print("\t> Ignoring known issues:") 1208 print("\t> Ignoring known issues:")
1209 print(" ".join(self.known_issues") 1209 print(" ".join(self.known_issues")
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...@@ -15,7 +15,7 @@ cp `which x3dna-dssr` $THISDIR ...@@ -15,7 +15,7 @@ cp `which x3dna-dssr` $THISDIR
15 15
16 ######################################################## Build Docker image ###################################################### 16 ######################################################## Build Docker image ######################################################
17 # Execute the Dockerfile and build the image 17 # Execute the Dockerfile and build the image
18 -docker build -t persalteas/rnanet .. 18 +docker build -t rnanet:latest ..
19 19
20 ############################################################## Cleaning ########################################################## 20 ############################################################## Cleaning ##########################################################
21 rm x3dna-dssr 21 rm x3dna-dssr
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