Louis BECQUEY / RNANet

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Louis BECQUEY
a8cd46e8 1 parent e70f9e6a

typo in 3D_only folder name

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Showing 1 changed file with 2 additions and 2 deletions
...@@ -1495,10 +1495,10 @@ class Pipeline: ...@@ -1495,10 +1495,10 @@ class Pipeline:
1495 subprocess.run(["ln", "-s", runDir + f"/archive/RNANET_datapoints_{datestr}.tar.gz", runDir + f"/archive/RNANET_datapoints_latest.tar.gz"]) 1495 subprocess.run(["ln", "-s", runDir + f"/archive/RNANET_datapoints_{datestr}.tar.gz", runDir + f"/archive/RNANET_datapoints_latest.tar.gz"])
1496 1496
1497 # gather the alignments 1497 # gather the alignments
1498 - os.makedirs(path_to_seq_data + "realigned/3D_only", exist_ok=True) 1498 + os.makedirs(path_to_seq_data + "realigned/3d_only", exist_ok=True)
1499 subprocess.run(["cp", path_to_seq_data + "realigned/*_3d_only.afa", path_to_seq_data + "realigned/3d_only" ]) 1499 subprocess.run(["cp", path_to_seq_data + "realigned/*_3d_only.afa", path_to_seq_data + "realigned/3d_only" ])
1500 subprocess.run(["rm", "-f", runDir + f"/archive/RNANET_alignments_latest.tar.gz"]) 1500 subprocess.run(["rm", "-f", runDir + f"/archive/RNANET_alignments_latest.tar.gz"])
1501 - subprocess.run(["tar", "-C", path_to_seq_data + "realigned/3D_only" , "-czf", runDir + f"/archive/RNANET_alignments_latest.tar.gz", "."]) 1501 + subprocess.run(["tar", "-C", path_to_seq_data + "realigned/3d_only" , "-czf", runDir + f"/archive/RNANET_alignments_latest.tar.gz", "."])
1502 1502
1503 def sanitize_database(self): 1503 def sanitize_database(self):
1504 """Searches for issues in the database and correct them""" 1504 """Searches for issues in the database and correct them"""
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