Louis BECQUEY

versioning details

......@@ -7,7 +7,7 @@ Future versions might compute a real MSA-based clusering directly with Rfamseq n
This script prepares the dataset from available public data in PDB and Rfam.
**Please cite**: *Coming soon, expect it summer 2020*
**Please cite**: *Coming soon, expect it in 2021*
# What it does
The script follows these steps:
......@@ -72,7 +72,7 @@ You need to install:
## Command line
Run `./RNANet.py --3d-folder path/to/3D/data/folder --seq-folder path/to/sequence/data/folder [ - other options ]`.
It requires solid hardware to run. It takes around 15 hours the first time, and 9h then, tested on a server with 32 cores and 48GB of RAM.
It requires solid hardware to run. It takes around around 12 to 15 hours the first time, and 1 to 3h then, tested on a server with 32 cores and 48GB of RAM.
The detailed list of options is below:
```
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......@@ -1026,7 +1026,7 @@ class Pipeline:
print(f"nohup bash -c 'time {runDir}/RNAnet.py --3d-folder ~/Data/RNA/3D/ --seq-folder ~/Data/RNA/sequences -s --archive' &")
sys.exit()
elif opt == '--version':
print("RNANet 1.0 alpha ")
print("RNANet 1.1 beta")
sys.exit()
elif opt == "-r" or opt == "--resolution":
assert float(arg) > 0.0 and float(arg) <= 20.0
......