Louis BECQUEY

automation details

......@@ -4,7 +4,7 @@ cd /home/lbecquey/Projects/RNANet;
rm -f stdout.txt stderr.txt errors.txt;
# Run RNANet
time './RNAnet.py --3d-folder /home/lbequey/Data/RNA/3D/ --seq-folder /home/lbecquey/Data/RNA/sequences/ -s -r 20.0 --archive' > stdout.txt 2> stderr.txt;
nohup bash -c 'time ./RNAnet.py --3d-folder /home/lbecquey/Data/RNA/3D/ --seq-folder /home/lbecquey/Data/RNA/sequences/ -s -r 20.0 --archive';
# Compress
rm -f results/RNANet.db.gz
......
......@@ -10,6 +10,17 @@ for KILLPID in $PROCESS_LIST; do
fi
done
PROCESS_TO_KILL="statistics.py"
PROCESS_LIST=`ps ax | grep -Ei ${PROCESS_TO_KILL} | grep -Eiv '(grep|vi statistics.py)' | awk ' { print $1;}'`
KILLED=
for KILLPID in $PROCESS_LIST; do
if [ ! -z $KILLPID ];then
kill -9 $KILLPID
echo "Killed PID ${KILLPID}"
KILLED=yes
fi
done
if [ -z $KILLED ];then
echo "Didn't kill anything"
fi
......
1ml5_1_a_1-2914
1ml5_1_a_151-2903
1ml5_1_A_7-1518
1ml5_1_A_7-1515
1ml5_1_A_2-1520
1ml5_1_b_5-121
2rdo_1_A_3-118
4v48_1_A9_3-118
4v47_1_A9_3-118
1vy7_1_AY_1-73
1vy7_1_CY_1-73
4w2h_1_CY_1-73
6zmi_1_L8_1267-4755
6zm7_1_L8_1267-4755
6y6x_1_L8_1267-4755
6z6n_1_L8_1267-4755
6qzp_1_L8_1267-4755
6zme_1_L8_1267-4755
6z6l_1_L8_1267-4755
6ek0_1_L8_1267-4755
6zmo_1_L8_1267-4755
6z6m_1_L8_1267-4755
6ole_1_D_1267-4755
6om0_1_D_1267-4755
6y2l_1_L8_1267-4755
6y0g_1_L8_1267-4755
6oli_1_D_1267-4755
6olg_1_A3_1267-4755
6y57_1_L8_1267-4755
5t2c_1_C_1267-4755
6om7_1_D_1267-4755
4ug0_1_L8_1267-4755
6olf_1_D_1267-4755
6ip5_1_1C_1267-4755
6ip8_1_1C_1267-4755
6olz_1_A3_1267-4755
5aj0_1_A3_1267-4755
5lks_1_L8_1267-4755
6ip6_1_1C_1267-4755
4v6x_1_A8_1267-4755
2z9q_1_A_1-72
1ls2_1_B_1-73
3ep2_1_Y_1-72
3eq3_1_Y_1-72
4v48_1_A6_1-73
1gsg_1_T_1-72
3jcr_1_H_1-115
1eg0_1_O_1-73
4v42_1_BB_5-121
4v42_1_BA_1-2914
4v42_1_BA_151-2903
2ob7_1_A_10-319
1x1l_1_A_1-130
1zc8_1_Z_1-130
1zc8_1_Z_1-91
2ob7_1_D_1-130
1r2x_1_C_1-58
1r2w_1_C_1-58
1eg0_1_L_1-56
1eg0_1_L_1-57
6rxu_1_C2_588-2386
6rxu_1_C2_588-2383
6rxu_1_C2_583-2388
5oql_1_2_588-2386
5oql_1_2_588-2383
5oql_1_2_583-2388
6rxv_1_C2_588-2386
6rxv_1_C2_588-2383
6rxv_1_C2_583-2388
6rxz_1_C2_588-2386
6rxz_1_C2_588-2383
6rxz_1_C2_583-2388
6rxy_1_C2_588-2386
6rxy_1_C2_588-2383
6rxy_1_C2_583-2388
6rxt_1_C2_588-2386
6rxt_1_C2_588-2383
6rxt_1_C2_583-2388
4v48_1_BA_1-91
4v48_1_BA_6-1541
4v48_1_BA_6-1538
4v48_1_BA_1-1543
4v47_1_BA_1-91
4v47_1_BA_6-1540
4v47_1_BA_6-1537
4v47_1_BA_1-1542
2rdo_1_B_6-1460
2rdo_1_B_6-1522
2rdo_1_B_1-2903
2rdo_1_B_6-1457
2rdo_1_B_1-2904
2rdo_1_B_1-1528
2rdo_1_B_160-2893
4v48_1_A0_6-1460
4v48_1_A0_6-1522
4v48_1_A0_1-2903
4v48_1_A0_6-1457
4v48_1_A0_1-2904
4v48_1_A0_1-1528
4v48_1_A0_160-2893
4v47_1_A0_6-1460
4v47_1_A0_6-1522
4v47_1_A0_1-2903
4v47_1_A0_6-1457
4v47_1_A0_1-2904
4v47_1_A0_1-1528
4v47_1_A0_160-2893
1zc8_1_A_1-59
1mvr_1_D_1-59
4c9d_1_D_29-1
4c9d_1_C_29-1
4adx_1_9_1-121
1zn1_1_B_1-59
1emi_1_B_1-108
3iy9_1_A_498-1027
1jgq_1_A_20-55
1jgq_1_A_7-1518
1jgq_1_A_7-1515
1jgq_1_A_2-1520
4v42_1_AA_20-55
4v42_1_AA_7-1518
4v42_1_AA_7-1515
4v42_1_AA_2-1520
1jgo_1_A_20-55
1jgo_1_A_7-1518
1jgo_1_A_7-1515
1jgo_1_A_2-1520
1jgp_1_A_20-55
1jgp_1_A_7-1518
1jgp_1_A_7-1515
1jgp_1_A_2-1520
3ep2_1_B_1-50
3eq3_1_B_1-50
3eq4_1_B_1-50
3pgw_1_R_1-164
3pgw_1_N_1-164
3cw1_1_x_1-138
3cw1_1_w_1-138
3cw1_1_V_1-138
3cw1_1_v_1-138
2iy3_1_B_9-105
3jcr_1_N_1-106
3jcr_1_N_1-188
2vaz_1_A_64-177
2ftc_1_R_81-1466
2ftc_1_R_1-1568
2ftc_1_R_792-1568
3jcr_1_M_1-141
3jcr_1_M_1-107
3jcr_1_M_1-188
4v5z_1_B0_1-2840
4v5z_1_B0_1-2899
4v5z_1_B0_1-2902
5g2x_1_A_595-692
3iy8_1_A_1-540
4v5z_1_BY_2-113
4v5z_1_BZ_1-70
1mvr_1_B_1-96
4adx_1_0_1-2923
4adx_1_0_132-2915
3eq4_1_Y_1-69
4v5z_1_AA_1-1562
4v5z_1_AA_1-1563
1ml5_1_a_1-2914
Could not find nucleotides of chain a in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
1ml5_1_a_151-2903
Could not find nucleotides of chain a in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
1ml5_1_A_7-1518
Could not find nucleotides of chain A in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
1ml5_1_A_7-1515
Could not find nucleotides of chain A in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
1ml5_1_A_2-1520
Could not find nucleotides of chain A in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
1ml5_1_b_5-121
Could not find nucleotides of chain b in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
2rdo_1_A_3-118
DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_A_3-118.
4v48_1_A9_3-118
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A9_3-118.
4v47_1_A9_3-118
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A9_3-118.
1vy7_1_AY_1-73
Sequence is too short. (< 5 resolved nts)
1vy7_1_CY_1-73
Sequence is too short. (< 5 resolved nts)
4w2h_1_CY_1-73
Sequence is too short. (< 5 resolved nts)
6zmi_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 6zmi.json. Either there is a problem with 6zmi mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6zm7_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 6zm7.json. Either there is a problem with 6zm7 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6y6x_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 6y6x.json. Either there is a problem with 6y6x mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6z6n_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 6z6n.json. Either there is a problem with 6z6n mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6qzp_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 6qzp.json. Either there is a problem with 6qzp mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6zme_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 6zme.json. Either there is a problem with 6zme mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6z6l_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 6z6l.json. Either there is a problem with 6z6l mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6ek0_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 6ek0.json. Either there is a problem with 6ek0 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6zmo_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 6zmo.json. Either there is a problem with 6zmo mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6z6m_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 6z6m.json. Either there is a problem with 6z6m mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6ole_1_D_1267-4755
Could not find nucleotides of chain D in annotation 6ole.json. Either there is a problem with 6ole mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6om0_1_D_1267-4755
Could not find nucleotides of chain D in annotation 6om0.json. Either there is a problem with 6om0 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6y2l_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 6y2l.json. Either there is a problem with 6y2l mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6y0g_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 6y0g.json. Either there is a problem with 6y0g mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6oli_1_D_1267-4755
Could not find nucleotides of chain D in annotation 6oli.json. Either there is a problem with 6oli mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6olg_1_A3_1267-4755
Could not find nucleotides of chain A3 in annotation 6olg.json. Either there is a problem with 6olg mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6y57_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 6y57.json. Either there is a problem with 6y57 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
5t2c_1_C_1267-4755
Could not find nucleotides of chain C in annotation 5t2c.json. Either there is a problem with 5t2c mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6om7_1_D_1267-4755
Could not find nucleotides of chain D in annotation 6om7.json. Either there is a problem with 6om7 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
4ug0_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 4ug0.json. Either there is a problem with 4ug0 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6olf_1_D_1267-4755
Could not find nucleotides of chain D in annotation 6olf.json. Either there is a problem with 6olf mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6ip5_1_1C_1267-4755
Could not find nucleotides of chain 1C in annotation 6ip5.json. Either there is a problem with 6ip5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6ip8_1_1C_1267-4755
Could not find nucleotides of chain 1C in annotation 6ip8.json. Either there is a problem with 6ip8 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6olz_1_A3_1267-4755
Could not find nucleotides of chain A3 in annotation 6olz.json. Either there is a problem with 6olz mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
5aj0_1_A3_1267-4755
Could not find nucleotides of chain A3 in annotation 5aj0.json. Either there is a problem with 5aj0 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
5lks_1_L8_1267-4755
Could not find nucleotides of chain L8 in annotation 5lks.json. Either there is a problem with 5lks mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6ip6_1_1C_1267-4755
Could not find nucleotides of chain 1C in annotation 6ip6.json. Either there is a problem with 6ip6 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
4v6x_1_A8_1267-4755
Could not find nucleotides of chain A8 in annotation 4v6x.json. Either there is a problem with 4v6x mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
2z9q_1_A_1-72
DSSR warning 2z9q.json: no nucleotides found. Ignoring 2z9q_1_A_1-72.
1ls2_1_B_1-73
DSSR warning 1ls2.json: no nucleotides found. Ignoring 1ls2_1_B_1-73.
3ep2_1_Y_1-72
DSSR warning 3ep2.json: no nucleotides found. Ignoring 3ep2_1_Y_1-72.
3eq3_1_Y_1-72
DSSR warning 3eq3.json: no nucleotides found. Ignoring 3eq3_1_Y_1-72.
4v48_1_A6_1-73
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A6_1-73.
1gsg_1_T_1-72
DSSR warning 1gsg.json: no nucleotides found. Ignoring 1gsg_1_T_1-72.
3jcr_1_H_1-115
DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_H_1-115.
1eg0_1_O_1-73
DSSR warning 1eg0.json: no nucleotides found. Ignoring 1eg0_1_O_1-73.
4v42_1_BB_5-121
Could not find nucleotides of chain BB in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
4v42_1_BA_1-2914
Could not find nucleotides of chain BA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
4v42_1_BA_151-2903
Could not find nucleotides of chain BA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
2ob7_1_A_10-319
DSSR warning 2ob7.json: no nucleotides found. Ignoring 2ob7_1_A_10-319.
1x1l_1_A_1-130
DSSR warning 1x1l.json: no nucleotides found. Ignoring 1x1l_1_A_1-130.
1zc8_1_Z_1-130
DSSR warning 1zc8.json: no nucleotides found. Ignoring 1zc8_1_Z_1-130.
1zc8_1_Z_1-91
DSSR warning 1zc8.json: no nucleotides found. Ignoring 1zc8_1_Z_1-91.
2ob7_1_D_1-130
DSSR warning 2ob7.json: no nucleotides found. Ignoring 2ob7_1_D_1-130.
1r2x_1_C_1-58
DSSR warning 1r2x.json: no nucleotides found. Ignoring 1r2x_1_C_1-58.
1r2w_1_C_1-58
DSSR warning 1r2w.json: no nucleotides found. Ignoring 1r2w_1_C_1-58.
1eg0_1_L_1-56
DSSR warning 1eg0.json: no nucleotides found. Ignoring 1eg0_1_L_1-56.
1eg0_1_L_1-57
DSSR warning 1eg0.json: no nucleotides found. Ignoring 1eg0_1_L_1-57.
6rxu_1_C2_588-2386
Could not find nucleotides of chain C2 in annotation 6rxu.json. Either there is a problem with 6rxu mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6rxu_1_C2_588-2383
Could not find nucleotides of chain C2 in annotation 6rxu.json. Either there is a problem with 6rxu mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6rxu_1_C2_583-2388
Could not find nucleotides of chain C2 in annotation 6rxu.json. Either there is a problem with 6rxu mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
5oql_1_2_588-2386
Could not find nucleotides of chain 2 in annotation 5oql.json. Either there is a problem with 5oql mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
5oql_1_2_588-2383
Could not find nucleotides of chain 2 in annotation 5oql.json. Either there is a problem with 5oql mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
5oql_1_2_583-2388
Could not find nucleotides of chain 2 in annotation 5oql.json. Either there is a problem with 5oql mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6rxv_1_C2_588-2386
Could not find nucleotides of chain C2 in annotation 6rxv.json. Either there is a problem with 6rxv mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6rxv_1_C2_588-2383
Could not find nucleotides of chain C2 in annotation 6rxv.json. Either there is a problem with 6rxv mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6rxv_1_C2_583-2388
Could not find nucleotides of chain C2 in annotation 6rxv.json. Either there is a problem with 6rxv mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6rxz_1_C2_588-2386
Could not find nucleotides of chain C2 in annotation 6rxz.json. Either there is a problem with 6rxz mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6rxz_1_C2_588-2383
Could not find nucleotides of chain C2 in annotation 6rxz.json. Either there is a problem with 6rxz mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6rxz_1_C2_583-2388
Could not find nucleotides of chain C2 in annotation 6rxz.json. Either there is a problem with 6rxz mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6rxy_1_C2_588-2386
Could not find nucleotides of chain C2 in annotation 6rxy.json. Either there is a problem with 6rxy mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6rxy_1_C2_588-2383
Could not find nucleotides of chain C2 in annotation 6rxy.json. Either there is a problem with 6rxy mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6rxy_1_C2_583-2388
Could not find nucleotides of chain C2 in annotation 6rxy.json. Either there is a problem with 6rxy mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6rxt_1_C2_588-2386
Could not find nucleotides of chain C2 in annotation 6rxt.json. Either there is a problem with 6rxt mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6rxt_1_C2_588-2383
Could not find nucleotides of chain C2 in annotation 6rxt.json. Either there is a problem with 6rxt mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6rxt_1_C2_583-2388
Could not find nucleotides of chain C2 in annotation 6rxt.json. Either there is a problem with 6rxt mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
4v48_1_BA_1-91
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_1-91.
4v48_1_BA_6-1541
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_6-1541.
4v48_1_BA_6-1538
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_6-1538.
4v48_1_BA_1-1543
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_1-1543.
4v47_1_BA_1-91
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_1-91.
4v47_1_BA_6-1540
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_6-1540.
4v47_1_BA_6-1537
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_6-1537.
4v47_1_BA_1-1542
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_1-1542.
2rdo_1_B_6-1460
DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_6-1460.
2rdo_1_B_6-1522
DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_6-1522.
2rdo_1_B_1-2903
DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_1-2903.
2rdo_1_B_6-1457
DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_6-1457.
2rdo_1_B_1-2904
DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_1-2904.
2rdo_1_B_1-1528
DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_1-1528.
2rdo_1_B_160-2893
DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_160-2893.
4v48_1_A0_6-1460
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_6-1460.
4v48_1_A0_6-1522
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_6-1522.
4v48_1_A0_1-2903
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_1-2903.
4v48_1_A0_6-1457
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_6-1457.
4v48_1_A0_1-2904
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_1-2904.
4v48_1_A0_1-1528
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_1-1528.
4v48_1_A0_160-2893
DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_160-2893.
4v47_1_A0_6-1460
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_6-1460.
4v47_1_A0_6-1522
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_6-1522.
4v47_1_A0_1-2903
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_1-2903.
4v47_1_A0_6-1457
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_6-1457.
4v47_1_A0_1-2904
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_1-2904.
4v47_1_A0_1-1528
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_1-1528.
4v47_1_A0_160-2893
DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_160-2893.
1zc8_1_A_1-59
DSSR warning 1zc8.json: no nucleotides found. Ignoring 1zc8_1_A_1-59.
1mvr_1_D_1-59
DSSR warning 1mvr.json: no nucleotides found. Ignoring 1mvr_1_D_1-59.
4c9d_1_D_29-1
Mapping is reversed, this case is not supported (yet).
4c9d_1_C_29-1
Mapping is reversed, this case is not supported (yet).
4adx_1_9_1-121
DSSR warning 4adx.json: no nucleotides found. Ignoring 4adx_1_9_1-121.
1zn1_1_B_1-59
DSSR warning 1zn1.json: no nucleotides found. Ignoring 1zn1_1_B_1-59.
1emi_1_B_1-108
DSSR warning 1emi.json: no nucleotides found. Ignoring 1emi_1_B_1-108.
3iy9_1_A_498-1027
DSSR warning 3iy9.json: no nucleotides found. Ignoring 3iy9_1_A_498-1027.
1jgq_1_A_20-55
Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
1jgq_1_A_7-1518
Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
1jgq_1_A_7-1515
Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
1jgq_1_A_2-1520
Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
4v42_1_AA_20-55
Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
4v42_1_AA_7-1518
Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
4v42_1_AA_7-1515
Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
4v42_1_AA_2-1520
Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
1jgo_1_A_20-55
Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
1jgo_1_A_7-1518
Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
1jgo_1_A_7-1515
Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
1jgo_1_A_2-1520
Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
1jgp_1_A_20-55
Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
1jgp_1_A_7-1518
Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
1jgp_1_A_7-1515
Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
1jgp_1_A_2-1520
Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
3ep2_1_B_1-50
DSSR warning 3ep2.json: no nucleotides found. Ignoring 3ep2_1_B_1-50.
3eq3_1_B_1-50
DSSR warning 3eq3.json: no nucleotides found. Ignoring 3eq3_1_B_1-50.
3eq4_1_B_1-50
DSSR warning 3eq4.json: no nucleotides found. Ignoring 3eq4_1_B_1-50.
3pgw_1_R_1-164
DSSR warning 3pgw.json: no nucleotides found. Ignoring 3pgw_1_R_1-164.
3pgw_1_N_1-164
DSSR warning 3pgw.json: no nucleotides found. Ignoring 3pgw_1_N_1-164.
3cw1_1_x_1-138
DSSR warning 3cw1.json: no nucleotides found. Ignoring 3cw1_1_x_1-138.
3cw1_1_w_1-138
DSSR warning 3cw1.json: no nucleotides found. Ignoring 3cw1_1_w_1-138.
3cw1_1_V_1-138
DSSR warning 3cw1.json: no nucleotides found. Ignoring 3cw1_1_V_1-138.
3cw1_1_v_1-138
DSSR warning 3cw1.json: no nucleotides found. Ignoring 3cw1_1_v_1-138.
2iy3_1_B_9-105
DSSR warning 2iy3.json: no nucleotides found. Ignoring 2iy3_1_B_9-105.
3jcr_1_N_1-106
DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_N_1-106.
3jcr_1_N_1-188
DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_N_1-188.
2vaz_1_A_64-177
DSSR warning 2vaz.json: no nucleotides found. Ignoring 2vaz_1_A_64-177.
2ftc_1_R_81-1466
DSSR warning 2ftc.json: no nucleotides found. Ignoring 2ftc_1_R_81-1466.
2ftc_1_R_1-1568
DSSR warning 2ftc.json: no nucleotides found. Ignoring 2ftc_1_R_1-1568.
2ftc_1_R_792-1568
DSSR warning 2ftc.json: no nucleotides found. Ignoring 2ftc_1_R_792-1568.
3jcr_1_M_1-141
DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_M_1-141.
3jcr_1_M_1-107
DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_M_1-107.
3jcr_1_M_1-188
DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_M_1-188.
4v5z_1_B0_1-2840
DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2840.
4v5z_1_B0_1-2899
DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2899.
4v5z_1_B0_1-2902
DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2902.
5g2x_1_A_595-692
Sequence is too short. (< 5 resolved nts)
3iy8_1_A_1-540
DSSR warning 3iy8.json: no nucleotides found. Ignoring 3iy8_1_A_1-540.
4v5z_1_BY_2-113
DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_BY_2-113.
4v5z_1_BZ_1-70
DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_BZ_1-70.
1mvr_1_B_1-96
DSSR warning 1mvr.json: no nucleotides found. Ignoring 1mvr_1_B_1-96.
4adx_1_0_1-2923
DSSR warning 4adx.json: no nucleotides found. Ignoring 4adx_1_0_1-2923.
4adx_1_0_132-2915
DSSR warning 4adx.json: no nucleotides found. Ignoring 4adx_1_0_132-2915.
3eq4_1_Y_1-69
DSSR warning 3eq4.json: no nucleotides found. Ignoring 3eq4_1_Y_1-69.
4v5z_1_AA_1-1562
DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_AA_1-1562.
4v5z_1_AA_1-1563
DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_AA_1-1563.