Louis BECQUEY / RNANet

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Louis BECQUEY
be756956 1 parent 5b788118

automation details

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Showing 4 changed files with 664 additions and 1 deletions
...@@ -4,7 +4,7 @@ cd /home/lbecquey/Projects/RNANet; ...@@ -4,7 +4,7 @@ cd /home/lbecquey/Projects/RNANet;
4 rm -f stdout.txt stderr.txt errors.txt; 4 rm -f stdout.txt stderr.txt errors.txt;
5 5
6 # Run RNANet 6 # Run RNANet
7 -time './RNAnet.py --3d-folder /home/lbequey/Data/RNA/3D/ --seq-folder /home/lbecquey/Data/RNA/sequences/ -s -r 20.0 --archive' > stdout.txt 2> stderr.txt; 7 +nohup bash -c 'time ./RNAnet.py --3d-folder /home/lbecquey/Data/RNA/3D/ --seq-folder /home/lbecquey/Data/RNA/sequences/ -s -r 20.0 --archive';
8 8
9 # Compress 9 # Compress
10 rm -f results/RNANet.db.gz 10 rm -f results/RNANet.db.gz
......
...@@ -10,6 +10,17 @@ for KILLPID in $PROCESS_LIST; do ...@@ -10,6 +10,17 @@ for KILLPID in $PROCESS_LIST; do
10 fi 10 fi
11 done 11 done
12 12
13 +PROCESS_TO_KILL="statistics.py"
14 +PROCESS_LIST=`ps ax | grep -Ei ${PROCESS_TO_KILL} | grep -Eiv '(grep|vi statistics.py)' | awk ' { print $1;}'`
15 +KILLED=
16 +for KILLPID in $PROCESS_LIST; do
17 + if [ ! -z $KILLPID ];then
18 + kill -9 $KILLPID
19 + echo "Killed PID ${KILLPID}"
20 + KILLED=yes
21 + fi
22 +done
23 +
13 if [ -z $KILLED ];then 24 if [ -z $KILLED ];then
14 echo "Didn't kill anything" 25 echo "Didn't kill anything"
15 fi 26 fi
......
1 +1ml5_1_a_1-2914
2 +1ml5_1_a_151-2903
3 +1ml5_1_A_7-1518
4 +1ml5_1_A_7-1515
5 +1ml5_1_A_2-1520
6 +1ml5_1_b_5-121
7 +2rdo_1_A_3-118
8 +4v48_1_A9_3-118
9 +4v47_1_A9_3-118
10 +1vy7_1_AY_1-73
11 +1vy7_1_CY_1-73
12 +4w2h_1_CY_1-73
13 +6zmi_1_L8_1267-4755
14 +6zm7_1_L8_1267-4755
15 +6y6x_1_L8_1267-4755
16 +6z6n_1_L8_1267-4755
17 +6qzp_1_L8_1267-4755
18 +6zme_1_L8_1267-4755
19 +6z6l_1_L8_1267-4755
20 +6ek0_1_L8_1267-4755
21 +6zmo_1_L8_1267-4755
22 +6z6m_1_L8_1267-4755
23 +6ole_1_D_1267-4755
24 +6om0_1_D_1267-4755
25 +6y2l_1_L8_1267-4755
26 +6y0g_1_L8_1267-4755
27 +6oli_1_D_1267-4755
28 +6olg_1_A3_1267-4755
29 +6y57_1_L8_1267-4755
30 +5t2c_1_C_1267-4755
31 +6om7_1_D_1267-4755
32 +4ug0_1_L8_1267-4755
33 +6olf_1_D_1267-4755
34 +6ip5_1_1C_1267-4755
35 +6ip8_1_1C_1267-4755
36 +6olz_1_A3_1267-4755
37 +5aj0_1_A3_1267-4755
38 +5lks_1_L8_1267-4755
39 +6ip6_1_1C_1267-4755
40 +4v6x_1_A8_1267-4755
41 +2z9q_1_A_1-72
42 +1ls2_1_B_1-73
43 +3ep2_1_Y_1-72
44 +3eq3_1_Y_1-72
45 +4v48_1_A6_1-73
46 +1gsg_1_T_1-72
47 +3jcr_1_H_1-115
48 +1eg0_1_O_1-73
49 +4v42_1_BB_5-121
50 +4v42_1_BA_1-2914
51 +4v42_1_BA_151-2903
52 +2ob7_1_A_10-319
53 +1x1l_1_A_1-130
54 +1zc8_1_Z_1-130
55 +1zc8_1_Z_1-91
56 +2ob7_1_D_1-130
57 +1r2x_1_C_1-58
58 +1r2w_1_C_1-58
59 +1eg0_1_L_1-56
60 +1eg0_1_L_1-57
61 +6rxu_1_C2_588-2386
62 +6rxu_1_C2_588-2383
63 +6rxu_1_C2_583-2388
64 +5oql_1_2_588-2386
65 +5oql_1_2_588-2383
66 +5oql_1_2_583-2388
67 +6rxv_1_C2_588-2386
68 +6rxv_1_C2_588-2383
69 +6rxv_1_C2_583-2388
70 +6rxz_1_C2_588-2386
71 +6rxz_1_C2_588-2383
72 +6rxz_1_C2_583-2388
73 +6rxy_1_C2_588-2386
74 +6rxy_1_C2_588-2383
75 +6rxy_1_C2_583-2388
76 +6rxt_1_C2_588-2386
77 +6rxt_1_C2_588-2383
78 +6rxt_1_C2_583-2388
79 +4v48_1_BA_1-91
80 +4v48_1_BA_6-1541
81 +4v48_1_BA_6-1538
82 +4v48_1_BA_1-1543
83 +4v47_1_BA_1-91
84 +4v47_1_BA_6-1540
85 +4v47_1_BA_6-1537
86 +4v47_1_BA_1-1542
87 +2rdo_1_B_6-1460
88 +2rdo_1_B_6-1522
89 +2rdo_1_B_1-2903
90 +2rdo_1_B_6-1457
91 +2rdo_1_B_1-2904
92 +2rdo_1_B_1-1528
93 +2rdo_1_B_160-2893
94 +4v48_1_A0_6-1460
95 +4v48_1_A0_6-1522
96 +4v48_1_A0_1-2903
97 +4v48_1_A0_6-1457
98 +4v48_1_A0_1-2904
99 +4v48_1_A0_1-1528
100 +4v48_1_A0_160-2893
101 +4v47_1_A0_6-1460
102 +4v47_1_A0_6-1522
103 +4v47_1_A0_1-2903
104 +4v47_1_A0_6-1457
105 +4v47_1_A0_1-2904
106 +4v47_1_A0_1-1528
107 +4v47_1_A0_160-2893
108 +1zc8_1_A_1-59
109 +1mvr_1_D_1-59
110 +4c9d_1_D_29-1
111 +4c9d_1_C_29-1
112 +4adx_1_9_1-121
113 +1zn1_1_B_1-59
114 +1emi_1_B_1-108
115 +3iy9_1_A_498-1027
116 +1jgq_1_A_20-55
117 +1jgq_1_A_7-1518
118 +1jgq_1_A_7-1515
119 +1jgq_1_A_2-1520
120 +4v42_1_AA_20-55
121 +4v42_1_AA_7-1518
122 +4v42_1_AA_7-1515
123 +4v42_1_AA_2-1520
124 +1jgo_1_A_20-55
125 +1jgo_1_A_7-1518
126 +1jgo_1_A_7-1515
127 +1jgo_1_A_2-1520
128 +1jgp_1_A_20-55
129 +1jgp_1_A_7-1518
130 +1jgp_1_A_7-1515
131 +1jgp_1_A_2-1520
132 +3ep2_1_B_1-50
133 +3eq3_1_B_1-50
134 +3eq4_1_B_1-50
135 +3pgw_1_R_1-164
136 +3pgw_1_N_1-164
137 +3cw1_1_x_1-138
138 +3cw1_1_w_1-138
139 +3cw1_1_V_1-138
140 +3cw1_1_v_1-138
141 +2iy3_1_B_9-105
142 +3jcr_1_N_1-106
143 +3jcr_1_N_1-188
144 +2vaz_1_A_64-177
145 +2ftc_1_R_81-1466
146 +2ftc_1_R_1-1568
147 +2ftc_1_R_792-1568
148 +3jcr_1_M_1-141
149 +3jcr_1_M_1-107
150 +3jcr_1_M_1-188
151 +4v5z_1_B0_1-2840
152 +4v5z_1_B0_1-2899
153 +4v5z_1_B0_1-2902
154 +5g2x_1_A_595-692
155 +3iy8_1_A_1-540
156 +4v5z_1_BY_2-113
157 +4v5z_1_BZ_1-70
158 +1mvr_1_B_1-96
159 +4adx_1_0_1-2923
160 +4adx_1_0_132-2915
161 +3eq4_1_Y_1-69
162 +4v5z_1_AA_1-1562
163 +4v5z_1_AA_1-1563
1 +1ml5_1_a_1-2914
2 +Could not find nucleotides of chain a in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
3 +
4 +1ml5_1_a_151-2903
5 +Could not find nucleotides of chain a in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
6 +
7 +1ml5_1_A_7-1518
8 +Could not find nucleotides of chain A in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
9 +
10 +1ml5_1_A_7-1515
11 +Could not find nucleotides of chain A in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
12 +
13 +1ml5_1_A_2-1520
14 +Could not find nucleotides of chain A in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
15 +
16 +1ml5_1_b_5-121
17 +Could not find nucleotides of chain b in annotation 1ml5.json. Either there is a problem with 1ml5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
18 +
19 +2rdo_1_A_3-118
20 +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_A_3-118.
21 +
22 +4v48_1_A9_3-118
23 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A9_3-118.
24 +
25 +4v47_1_A9_3-118
26 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A9_3-118.
27 +
28 +1vy7_1_AY_1-73
29 +Sequence is too short. (< 5 resolved nts)
30 +
31 +1vy7_1_CY_1-73
32 +Sequence is too short. (< 5 resolved nts)
33 +
34 +4w2h_1_CY_1-73
35 +Sequence is too short. (< 5 resolved nts)
36 +
37 +6zmi_1_L8_1267-4755
38 +Could not find nucleotides of chain L8 in annotation 6zmi.json. Either there is a problem with 6zmi mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
39 +
40 +6zm7_1_L8_1267-4755
41 +Could not find nucleotides of chain L8 in annotation 6zm7.json. Either there is a problem with 6zm7 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
42 +
43 +6y6x_1_L8_1267-4755
44 +Could not find nucleotides of chain L8 in annotation 6y6x.json. Either there is a problem with 6y6x mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
45 +
46 +6z6n_1_L8_1267-4755
47 +Could not find nucleotides of chain L8 in annotation 6z6n.json. Either there is a problem with 6z6n mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
48 +
49 +6qzp_1_L8_1267-4755
50 +Could not find nucleotides of chain L8 in annotation 6qzp.json. Either there is a problem with 6qzp mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
51 +
52 +6zme_1_L8_1267-4755
53 +Could not find nucleotides of chain L8 in annotation 6zme.json. Either there is a problem with 6zme mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
54 +
55 +6z6l_1_L8_1267-4755
56 +Could not find nucleotides of chain L8 in annotation 6z6l.json. Either there is a problem with 6z6l mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
57 +
58 +6ek0_1_L8_1267-4755
59 +Could not find nucleotides of chain L8 in annotation 6ek0.json. Either there is a problem with 6ek0 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
60 +
61 +6zmo_1_L8_1267-4755
62 +Could not find nucleotides of chain L8 in annotation 6zmo.json. Either there is a problem with 6zmo mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
63 +
64 +6z6m_1_L8_1267-4755
65 +Could not find nucleotides of chain L8 in annotation 6z6m.json. Either there is a problem with 6z6m mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
66 +
67 +6ole_1_D_1267-4755
68 +Could not find nucleotides of chain D in annotation 6ole.json. Either there is a problem with 6ole mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
69 +
70 +6om0_1_D_1267-4755
71 +Could not find nucleotides of chain D in annotation 6om0.json. Either there is a problem with 6om0 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
72 +
73 +6y2l_1_L8_1267-4755
74 +Could not find nucleotides of chain L8 in annotation 6y2l.json. Either there is a problem with 6y2l mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
75 +
76 +6y0g_1_L8_1267-4755
77 +Could not find nucleotides of chain L8 in annotation 6y0g.json. Either there is a problem with 6y0g mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
78 +
79 +6oli_1_D_1267-4755
80 +Could not find nucleotides of chain D in annotation 6oli.json. Either there is a problem with 6oli mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
81 +
82 +6olg_1_A3_1267-4755
83 +Could not find nucleotides of chain A3 in annotation 6olg.json. Either there is a problem with 6olg mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
84 +
85 +6y57_1_L8_1267-4755
86 +Could not find nucleotides of chain L8 in annotation 6y57.json. Either there is a problem with 6y57 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
87 +
88 +5t2c_1_C_1267-4755
89 +Could not find nucleotides of chain C in annotation 5t2c.json. Either there is a problem with 5t2c mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
90 +
91 +6om7_1_D_1267-4755
92 +Could not find nucleotides of chain D in annotation 6om7.json. Either there is a problem with 6om7 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
93 +
94 +4ug0_1_L8_1267-4755
95 +Could not find nucleotides of chain L8 in annotation 4ug0.json. Either there is a problem with 4ug0 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
96 +
97 +6olf_1_D_1267-4755
98 +Could not find nucleotides of chain D in annotation 6olf.json. Either there is a problem with 6olf mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
99 +
100 +6ip5_1_1C_1267-4755
101 +Could not find nucleotides of chain 1C in annotation 6ip5.json. Either there is a problem with 6ip5 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
102 +
103 +6ip8_1_1C_1267-4755
104 +Could not find nucleotides of chain 1C in annotation 6ip8.json. Either there is a problem with 6ip8 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
105 +
106 +6olz_1_A3_1267-4755
107 +Could not find nucleotides of chain A3 in annotation 6olz.json. Either there is a problem with 6olz mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
108 +
109 +5aj0_1_A3_1267-4755
110 +Could not find nucleotides of chain A3 in annotation 5aj0.json. Either there is a problem with 5aj0 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
111 +
112 +5lks_1_L8_1267-4755
113 +Could not find nucleotides of chain L8 in annotation 5lks.json. Either there is a problem with 5lks mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
114 +
115 +6ip6_1_1C_1267-4755
116 +Could not find nucleotides of chain 1C in annotation 6ip6.json. Either there is a problem with 6ip6 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
117 +
118 +4v6x_1_A8_1267-4755
119 +Could not find nucleotides of chain A8 in annotation 4v6x.json. Either there is a problem with 4v6x mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
120 +
121 +2z9q_1_A_1-72
122 +DSSR warning 2z9q.json: no nucleotides found. Ignoring 2z9q_1_A_1-72.
123 +
124 +1ls2_1_B_1-73
125 +DSSR warning 1ls2.json: no nucleotides found. Ignoring 1ls2_1_B_1-73.
126 +
127 +3ep2_1_Y_1-72
128 +DSSR warning 3ep2.json: no nucleotides found. Ignoring 3ep2_1_Y_1-72.
129 +
130 +3eq3_1_Y_1-72
131 +DSSR warning 3eq3.json: no nucleotides found. Ignoring 3eq3_1_Y_1-72.
132 +
133 +4v48_1_A6_1-73
134 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A6_1-73.
135 +
136 +1gsg_1_T_1-72
137 +DSSR warning 1gsg.json: no nucleotides found. Ignoring 1gsg_1_T_1-72.
138 +
139 +3jcr_1_H_1-115
140 +DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_H_1-115.
141 +
142 +1eg0_1_O_1-73
143 +DSSR warning 1eg0.json: no nucleotides found. Ignoring 1eg0_1_O_1-73.
144 +
145 +4v42_1_BB_5-121
146 +Could not find nucleotides of chain BB in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
147 +
148 +4v42_1_BA_1-2914
149 +Could not find nucleotides of chain BA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
150 +
151 +4v42_1_BA_151-2903
152 +Could not find nucleotides of chain BA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
153 +
154 +2ob7_1_A_10-319
155 +DSSR warning 2ob7.json: no nucleotides found. Ignoring 2ob7_1_A_10-319.
156 +
157 +1x1l_1_A_1-130
158 +DSSR warning 1x1l.json: no nucleotides found. Ignoring 1x1l_1_A_1-130.
159 +
160 +1zc8_1_Z_1-130
161 +DSSR warning 1zc8.json: no nucleotides found. Ignoring 1zc8_1_Z_1-130.
162 +
163 +1zc8_1_Z_1-91
164 +DSSR warning 1zc8.json: no nucleotides found. Ignoring 1zc8_1_Z_1-91.
165 +
166 +2ob7_1_D_1-130
167 +DSSR warning 2ob7.json: no nucleotides found. Ignoring 2ob7_1_D_1-130.
168 +
169 +1r2x_1_C_1-58
170 +DSSR warning 1r2x.json: no nucleotides found. Ignoring 1r2x_1_C_1-58.
171 +
172 +1r2w_1_C_1-58
173 +DSSR warning 1r2w.json: no nucleotides found. Ignoring 1r2w_1_C_1-58.
174 +
175 +1eg0_1_L_1-56
176 +DSSR warning 1eg0.json: no nucleotides found. Ignoring 1eg0_1_L_1-56.
177 +
178 +1eg0_1_L_1-57
179 +DSSR warning 1eg0.json: no nucleotides found. Ignoring 1eg0_1_L_1-57.
180 +
181 +6rxu_1_C2_588-2386
182 +Could not find nucleotides of chain C2 in annotation 6rxu.json. Either there is a problem with 6rxu mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
183 +
184 +6rxu_1_C2_588-2383
185 +Could not find nucleotides of chain C2 in annotation 6rxu.json. Either there is a problem with 6rxu mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
186 +
187 +6rxu_1_C2_583-2388
188 +Could not find nucleotides of chain C2 in annotation 6rxu.json. Either there is a problem with 6rxu mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
189 +
190 +5oql_1_2_588-2386
191 +Could not find nucleotides of chain 2 in annotation 5oql.json. Either there is a problem with 5oql mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
192 +
193 +5oql_1_2_588-2383
194 +Could not find nucleotides of chain 2 in annotation 5oql.json. Either there is a problem with 5oql mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
195 +
196 +5oql_1_2_583-2388
197 +Could not find nucleotides of chain 2 in annotation 5oql.json. Either there is a problem with 5oql mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
198 +
199 +6rxv_1_C2_588-2386
200 +Could not find nucleotides of chain C2 in annotation 6rxv.json. Either there is a problem with 6rxv mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
201 +
202 +6rxv_1_C2_588-2383
203 +Could not find nucleotides of chain C2 in annotation 6rxv.json. Either there is a problem with 6rxv mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
204 +
205 +6rxv_1_C2_583-2388
206 +Could not find nucleotides of chain C2 in annotation 6rxv.json. Either there is a problem with 6rxv mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
207 +
208 +6rxz_1_C2_588-2386
209 +Could not find nucleotides of chain C2 in annotation 6rxz.json. Either there is a problem with 6rxz mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
210 +
211 +6rxz_1_C2_588-2383
212 +Could not find nucleotides of chain C2 in annotation 6rxz.json. Either there is a problem with 6rxz mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
213 +
214 +6rxz_1_C2_583-2388
215 +Could not find nucleotides of chain C2 in annotation 6rxz.json. Either there is a problem with 6rxz mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
216 +
217 +6rxy_1_C2_588-2386
218 +Could not find nucleotides of chain C2 in annotation 6rxy.json. Either there is a problem with 6rxy mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
219 +
220 +6rxy_1_C2_588-2383
221 +Could not find nucleotides of chain C2 in annotation 6rxy.json. Either there is a problem with 6rxy mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
222 +
223 +6rxy_1_C2_583-2388
224 +Could not find nucleotides of chain C2 in annotation 6rxy.json. Either there is a problem with 6rxy mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
225 +
226 +6rxt_1_C2_588-2386
227 +Could not find nucleotides of chain C2 in annotation 6rxt.json. Either there is a problem with 6rxt mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
228 +
229 +6rxt_1_C2_588-2383
230 +Could not find nucleotides of chain C2 in annotation 6rxt.json. Either there is a problem with 6rxt mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
231 +
232 +6rxt_1_C2_583-2388
233 +Could not find nucleotides of chain C2 in annotation 6rxt.json. Either there is a problem with 6rxt mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
234 +
235 +4v48_1_BA_1-91
236 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_1-91.
237 +
238 +4v48_1_BA_6-1541
239 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_6-1541.
240 +
241 +4v48_1_BA_6-1538
242 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_6-1538.
243 +
244 +4v48_1_BA_1-1543
245 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_BA_1-1543.
246 +
247 +4v47_1_BA_1-91
248 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_1-91.
249 +
250 +4v47_1_BA_6-1540
251 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_6-1540.
252 +
253 +4v47_1_BA_6-1537
254 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_6-1537.
255 +
256 +4v47_1_BA_1-1542
257 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_BA_1-1542.
258 +
259 +2rdo_1_B_6-1460
260 +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_6-1460.
261 +
262 +2rdo_1_B_6-1522
263 +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_6-1522.
264 +
265 +2rdo_1_B_1-2903
266 +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_1-2903.
267 +
268 +2rdo_1_B_6-1457
269 +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_6-1457.
270 +
271 +2rdo_1_B_1-2904
272 +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_1-2904.
273 +
274 +2rdo_1_B_1-1528
275 +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_1-1528.
276 +
277 +2rdo_1_B_160-2893
278 +DSSR warning 2rdo.json: no nucleotides found. Ignoring 2rdo_1_B_160-2893.
279 +
280 +4v48_1_A0_6-1460
281 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_6-1460.
282 +
283 +4v48_1_A0_6-1522
284 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_6-1522.
285 +
286 +4v48_1_A0_1-2903
287 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_1-2903.
288 +
289 +4v48_1_A0_6-1457
290 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_6-1457.
291 +
292 +4v48_1_A0_1-2904
293 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_1-2904.
294 +
295 +4v48_1_A0_1-1528
296 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_1-1528.
297 +
298 +4v48_1_A0_160-2893
299 +DSSR warning 4v48.json: no nucleotides found. Ignoring 4v48_1_A0_160-2893.
300 +
301 +4v47_1_A0_6-1460
302 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_6-1460.
303 +
304 +4v47_1_A0_6-1522
305 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_6-1522.
306 +
307 +4v47_1_A0_1-2903
308 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_1-2903.
309 +
310 +4v47_1_A0_6-1457
311 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_6-1457.
312 +
313 +4v47_1_A0_1-2904
314 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_1-2904.
315 +
316 +4v47_1_A0_1-1528
317 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_1-1528.
318 +
319 +4v47_1_A0_160-2893
320 +DSSR warning 4v47.json: no nucleotides found. Ignoring 4v47_1_A0_160-2893.
321 +
322 +1zc8_1_A_1-59
323 +DSSR warning 1zc8.json: no nucleotides found. Ignoring 1zc8_1_A_1-59.
324 +
325 +1mvr_1_D_1-59
326 +DSSR warning 1mvr.json: no nucleotides found. Ignoring 1mvr_1_D_1-59.
327 +
328 +4c9d_1_D_29-1
329 +Mapping is reversed, this case is not supported (yet).
330 +
331 +4c9d_1_C_29-1
332 +Mapping is reversed, this case is not supported (yet).
333 +
334 +4adx_1_9_1-121
335 +DSSR warning 4adx.json: no nucleotides found. Ignoring 4adx_1_9_1-121.
336 +
337 +1zn1_1_B_1-59
338 +DSSR warning 1zn1.json: no nucleotides found. Ignoring 1zn1_1_B_1-59.
339 +
340 +1emi_1_B_1-108
341 +DSSR warning 1emi.json: no nucleotides found. Ignoring 1emi_1_B_1-108.
342 +
343 +3iy9_1_A_498-1027
344 +DSSR warning 3iy9.json: no nucleotides found. Ignoring 3iy9_1_A_498-1027.
345 +
346 +1jgq_1_A_20-55
347 +Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
348 +
349 +1jgq_1_A_7-1518
350 +Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
351 +
352 +1jgq_1_A_7-1515
353 +Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
354 +
355 +1jgq_1_A_2-1520
356 +Could not find nucleotides of chain A in annotation 1jgq.json. Either there is a problem with 1jgq mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
357 +
358 +4v42_1_AA_20-55
359 +Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
360 +
361 +4v42_1_AA_7-1518
362 +Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
363 +
364 +4v42_1_AA_7-1515
365 +Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
366 +
367 +4v42_1_AA_2-1520
368 +Could not find nucleotides of chain AA in annotation 4v42.json. Either there is a problem with 4v42 mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
369 +
370 +1jgo_1_A_20-55
371 +Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
372 +
373 +1jgo_1_A_7-1518
374 +Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
375 +
376 +1jgo_1_A_7-1515
377 +Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
378 +
379 +1jgo_1_A_2-1520
380 +Could not find nucleotides of chain A in annotation 1jgo.json. Either there is a problem with 1jgo mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
381 +
382 +1jgp_1_A_20-55
383 +Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
384 +
385 +1jgp_1_A_7-1518
386 +Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
387 +
388 +1jgp_1_A_7-1515
389 +Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
390 +
391 +1jgp_1_A_2-1520
392 +Could not find nucleotides of chain A in annotation 1jgp.json. Either there is a problem with 1jgp mmCIF download, or the bases are not resolved in the structure. Delete it and retry.
393 +
394 +3ep2_1_B_1-50
395 +DSSR warning 3ep2.json: no nucleotides found. Ignoring 3ep2_1_B_1-50.
396 +
397 +3eq3_1_B_1-50
398 +DSSR warning 3eq3.json: no nucleotides found. Ignoring 3eq3_1_B_1-50.
399 +
400 +3eq4_1_B_1-50
401 +DSSR warning 3eq4.json: no nucleotides found. Ignoring 3eq4_1_B_1-50.
402 +
403 +3pgw_1_R_1-164
404 +DSSR warning 3pgw.json: no nucleotides found. Ignoring 3pgw_1_R_1-164.
405 +
406 +3pgw_1_N_1-164
407 +DSSR warning 3pgw.json: no nucleotides found. Ignoring 3pgw_1_N_1-164.
408 +
409 +3cw1_1_x_1-138
410 +DSSR warning 3cw1.json: no nucleotides found. Ignoring 3cw1_1_x_1-138.
411 +
412 +3cw1_1_w_1-138
413 +DSSR warning 3cw1.json: no nucleotides found. Ignoring 3cw1_1_w_1-138.
414 +
415 +3cw1_1_V_1-138
416 +DSSR warning 3cw1.json: no nucleotides found. Ignoring 3cw1_1_V_1-138.
417 +
418 +3cw1_1_v_1-138
419 +DSSR warning 3cw1.json: no nucleotides found. Ignoring 3cw1_1_v_1-138.
420 +
421 +2iy3_1_B_9-105
422 +DSSR warning 2iy3.json: no nucleotides found. Ignoring 2iy3_1_B_9-105.
423 +
424 +3jcr_1_N_1-106
425 +DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_N_1-106.
426 +
427 +3jcr_1_N_1-188
428 +DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_N_1-188.
429 +
430 +2vaz_1_A_64-177
431 +DSSR warning 2vaz.json: no nucleotides found. Ignoring 2vaz_1_A_64-177.
432 +
433 +2ftc_1_R_81-1466
434 +DSSR warning 2ftc.json: no nucleotides found. Ignoring 2ftc_1_R_81-1466.
435 +
436 +2ftc_1_R_1-1568
437 +DSSR warning 2ftc.json: no nucleotides found. Ignoring 2ftc_1_R_1-1568.
438 +
439 +2ftc_1_R_792-1568
440 +DSSR warning 2ftc.json: no nucleotides found. Ignoring 2ftc_1_R_792-1568.
441 +
442 +3jcr_1_M_1-141
443 +DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_M_1-141.
444 +
445 +3jcr_1_M_1-107
446 +DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_M_1-107.
447 +
448 +3jcr_1_M_1-188
449 +DSSR warning 3jcr.json: no nucleotides found. Ignoring 3jcr_1_M_1-188.
450 +
451 +4v5z_1_B0_1-2840
452 +DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2840.
453 +
454 +4v5z_1_B0_1-2899
455 +DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2899.
456 +
457 +4v5z_1_B0_1-2902
458 +DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_B0_1-2902.
459 +
460 +5g2x_1_A_595-692
461 +Sequence is too short. (< 5 resolved nts)
462 +
463 +3iy8_1_A_1-540
464 +DSSR warning 3iy8.json: no nucleotides found. Ignoring 3iy8_1_A_1-540.
465 +
466 +4v5z_1_BY_2-113
467 +DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_BY_2-113.
468 +
469 +4v5z_1_BZ_1-70
470 +DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_BZ_1-70.
471 +
472 +1mvr_1_B_1-96
473 +DSSR warning 1mvr.json: no nucleotides found. Ignoring 1mvr_1_B_1-96.
474 +
475 +4adx_1_0_1-2923
476 +DSSR warning 4adx.json: no nucleotides found. Ignoring 4adx_1_0_1-2923.
477 +
478 +4adx_1_0_132-2915
479 +DSSR warning 4adx.json: no nucleotides found. Ignoring 4adx_1_0_132-2915.
480 +
481 +3eq4_1_Y_1-69
482 +DSSR warning 3eq4.json: no nucleotides found. Ignoring 3eq4_1_Y_1-69.
483 +
484 +4v5z_1_AA_1-1562
485 +DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_AA_1-1562.
486 +
487 +4v5z_1_AA_1-1563
488 +DSSR warning 4v5z.json: no nucleotides found. Ignoring 4v5z_1_AA_1-1563.
489 +