Toggle navigation
Toggle navigation
This project
Loading...
Sign in
Louis BECQUEY
/
RNANet
Go to a project
Toggle navigation
Toggle navigation pinning
Projects
Groups
Snippets
Help
Project
Activity
Repository
Pipelines
Graphs
Issues
0
Merge Requests
0
Wiki
Network
Create a new issue
Builds
Commits
Authored by
Louis BECQUEY
2020-04-20 08:18:18 +0000
Browse Files
Options
Browse Files
Download
Plain Diff
Commit
d9d32d4e9e7fdc6576c87b1ab7d85a0b9c0ac778
d9d32d4e
2 parents
cf484aad
343a7ef5
merge with IBISC branch
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
with
1 additions
and
3 deletions
RNAnet.py
RNAnet.py
View file @
d9d32d4
#!/usr/bin/python3.8
import
numpy
as
np
import
pandas
as
pd
import
concurrent.futures
,
Bio.PDB.StructureBuilder
,
getopt
,
gzip
,
io
,
itertools
,
json
,
os
,
pickle
,
psutil
,
re
,
requests
,
signal
,
sqlalchemy
,
sqlite3
,
subprocess
,
sys
,
time
,
traceback
,
warnings
import
concurrent.futures
,
Bio.PDB.StructureBuilder
,
getopt
,
gzip
,
io
,
json
,
os
,
pickle
,
psutil
,
re
,
requests
,
signal
,
sqlalchemy
,
sqlite3
,
subprocess
,
sys
,
time
,
traceback
,
warnings
from
Bio
import
AlignIO
,
SeqIO
from
Bio.PDB
import
MMCIFParser
from
Bio.PDB.mmcifio
import
MMCIFIO
...
...
@@ -537,7 +537,6 @@ class Chain:
self
.
seq_to_align
=
''
.
join
(
c_seq_to_align
)
self
.
seq
=
''
.
join
(
c_seq
)
class
Job
:
""" This class contains information about a task to run later.
...
...
@@ -572,7 +571,6 @@ class Job:
s
=
f
"{self.priority_}({self.nthreads}) [{self.comp_time}]
\t
{self.label:25}{self.func_.__name__}("
+
" "
.
join
([
str
(
a
)
for
a
in
self
.
args_
])
+
")"
return
s
class
Monitor
:
""" A job that simply watches the memory usage of another process.
...
...
Please
register
or
login
to post a comment