Louis BECQUEY / RNANet

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Louis BECQUEY
e56d4f9f 1 parent 04f27675

previous fix fixed nothing

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...@@ -1578,7 +1578,6 @@ class Pipeline: ...@@ -1578,7 +1578,6 @@ class Pipeline:
1578 for f in os.listdir(path_to_seq_data + "realigned"): 1578 for f in os.listdir(path_to_seq_data + "realigned"):
1579 if "3d_only.afa" in f: 1579 if "3d_only.afa" in f:
1580 subprocess.run(["cp", path_to_seq_data + "realigned/" + f, path_to_seq_data + "realigned/3d_only"]) 1580 subprocess.run(["cp", path_to_seq_data + "realigned/" + f, path_to_seq_data + "realigned/3d_only"])
1581 - subprocess.run(["cp", path_to_seq_data + "realigned/*_3d_only.afa", path_to_seq_data + "realigned/3d_only" ])
1582 subprocess.run(["rm", "-f", runDir + f"/archive/RNANET_alignments_latest.tar.gz"]) 1581 subprocess.run(["rm", "-f", runDir + f"/archive/RNANET_alignments_latest.tar.gz"])
1583 subprocess.run(["tar", "-C", path_to_seq_data + "realigned/3d_only" , "-czf", runDir + f"/archive/RNANET_alignments_latest.tar.gz", "."]) 1582 subprocess.run(["tar", "-C", path_to_seq_data + "realigned/3d_only" , "-czf", runDir + f"/archive/RNANET_alignments_latest.tar.gz", "."])
1584 1583
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