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... | @@ -845,7 +845,6 @@ def alignment_nt_stats(f, list_of_chains) : | ... | @@ -845,7 +845,6 @@ def alignment_nt_stats(f, list_of_chains) : |
845 | #print("\t>",f,"... ", flush=True) | 845 | #print("\t>",f,"... ", flush=True) |
846 | chains_ids = [ str(c) for c in list_of_chains ] | 846 | chains_ids = [ str(c) for c in list_of_chains ] |
847 | thr_idx = idxQueue.get() | 847 | thr_idx = idxQueue.get() |
848 | - print(thr_idx, flush=True) | ||
849 | 848 | ||
850 | # Open the alignment | 849 | # Open the alignment |
851 | align = AlignIO.read(path_to_seq_data + f"realigned/{f}++.afa", "fasta") | 850 | align = AlignIO.read(path_to_seq_data + f"realigned/{f}++.afa", "fasta") |
... | @@ -853,7 +852,8 @@ def alignment_nt_stats(f, list_of_chains) : | ... | @@ -853,7 +852,8 @@ def alignment_nt_stats(f, list_of_chains) : |
853 | #print("\t>",f,"... loaded", flush=True) | 852 | #print("\t>",f,"... loaded", flush=True) |
854 | 853 | ||
855 | # Compute statistics per column | 854 | # Compute statistics per column |
856 | - results = [ summarize_position(align[:,i]) for i in tqdm(range(alilen), position=thr_idx) ] | 855 | + pbar = tqdm(total=alilen, position=thr_idx, desc=f"Worker { thr_idx}: {f}", leave=False, ) |
856 | + results = [ summarize_position(align[:,i]) for i in pbar ] | ||
857 | frequencies = np.array(results).T | 857 | frequencies = np.array(results).T |
858 | #print("\t>",f,"... loaded, computed", flush=True) | 858 | #print("\t>",f,"... loaded, computed", flush=True) |
859 | 859 | ... | ... |
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