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1 | #!/usr/bin/python3.8 | 1 | #!/usr/bin/python3.8 |
2 | import numpy as np | 2 | import numpy as np |
3 | import pandas as pd | 3 | import pandas as pd |
4 | -import concurrent.futures, Bio.PDB.StructureBuilder, getopt, gzip, io, itertools, json, os, pickle, psutil, re, requests, signal, sqlalchemy, sqlite3, subprocess, sys, time, traceback, warnings | 4 | +import concurrent.futures, Bio.PDB.StructureBuilder, getopt, gzip, io, json, os, pickle, psutil, re, requests, signal, sqlalchemy, sqlite3, subprocess, sys, time, traceback, warnings |
5 | from Bio import AlignIO, SeqIO | 5 | from Bio import AlignIO, SeqIO |
6 | from Bio.PDB import MMCIFParser | 6 | from Bio.PDB import MMCIFParser |
7 | from Bio.PDB.mmcifio import MMCIFIO | 7 | from Bio.PDB.mmcifio import MMCIFIO |
... | @@ -537,7 +537,6 @@ class Chain: | ... | @@ -537,7 +537,6 @@ class Chain: |
537 | self.seq_to_align = ''.join(c_seq_to_align) | 537 | self.seq_to_align = ''.join(c_seq_to_align) |
538 | self.seq = ''.join(c_seq) | 538 | self.seq = ''.join(c_seq) |
539 | 539 | ||
540 | - | ||
541 | class Job: | 540 | class Job: |
542 | """ This class contains information about a task to run later. | 541 | """ This class contains information about a task to run later. |
543 | 542 | ||
... | @@ -572,7 +571,6 @@ class Job: | ... | @@ -572,7 +571,6 @@ class Job: |
572 | s = f"{self.priority_}({self.nthreads}) [{self.comp_time}]\t{self.label:25}{self.func_.__name__}(" + " ".join([str(a) for a in self.args_]) + ")" | 571 | s = f"{self.priority_}({self.nthreads}) [{self.comp_time}]\t{self.label:25}{self.func_.__name__}(" + " ".join([str(a) for a in self.args_]) + ")" |
573 | return s | 572 | return s |
574 | 573 | ||
575 | - | ||
576 | class Monitor: | 574 | class Monitor: |
577 | """ A job that simply watches the memory usage of another process. | 575 | """ A job that simply watches the memory usage of another process. |
578 | 576 | ... | ... |
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