delete_same_pdb.cpp
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#include <iostream>
#include <sstream>
#include <fstream>
#include "/mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo/cppsrc/json.hpp"
#include <typeinfo>
#include <set>
#include <algorithm>
#include <cstdio>
#include <vector>
#include <string>
using namespace std;
using json = nlohmann::json;
void delete_redundant_pdb(const string& jsonlibrary, const string& name, const string& jsonoutfile) {
std::ifstream lib(jsonlibrary);
std::ofstream outfile (jsonoutfile);
json new_motif;
json new_id;
json js = json::parse(lib);
for (auto it = js.begin(); it != js.end(); ++it) {
string id = it.key();
vector<string> list_pdbs;
bool is_added = true;
for (auto it2 = js[id].begin(); it2 != js[id].end(); ++it2) {
string field = it2.key();
if (!field.compare("pdb")) {
vector<string> tab = it2.value();
list_pdbs = tab;
} else {
new_id[field] = it2.value();
}
}
if (count(list_pdbs.begin(), list_pdbs.end(), name.substr(0, name.size()-2))) {
is_added = false;
}
if (is_added) {
new_id["pdb"] = list_pdbs;
new_motif[id] = new_id;
}
new_id.clear();
}
outfile << new_motif.dump(4) << endl;
outfile.close();
}
int main(int argc, char** argv)
{
string jsonlibrary = "/mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo/data/modules/ISAURE/Motifs_version_initiale/motifs_final.json";
string out = "/mnt/c/Users/natha/Documents/IBISC/biorseo2/biorseo/data/modules/ISAURE/Motifs_derniere_version/motifs_final.json";
string name = argv[1];
delete_redundant_pdb(jsonlibrary, name, out);
return 0;
}