gros_motifs_test.json
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{
"927": {
"contacts": "..****..**...&..&*****.**&**..*****&******&*******&....&*****&.***.....*******&.*****.....*****",
"occurences": 1,
"pdb": [
"5JVGA",
"5JVGB"
],
"pfam": [
"PF00181",
"PF00237",
"PF00238",
"PF00252",
"PF00276",
"PF00281",
"PF00297",
"PF00298",
"PF00327",
"PF00347",
"PF00453",
"PF00467",
"PF00468",
"PF00471",
"PF00572",
"PF00573",
"PF00673",
"PF00828",
"PF00829",
"PF00830",
"PF00831",
"PF00861",
"PF01016",
"PF01196",
"PF01245",
"PF01386",
"PF01632",
"PF01783",
"PF03947",
"PF14693",
"PF17136"
],
"sequence": "CCCGUGCCCAUAG&GG&CCACCCCA&CCAUGCCGA&CUGGGU&GUGAAAC&CGCC&AUGAU&CGGACCGCAGGGUCCC&AGUCGGUCAGCGCGGG",
"struct2d": ".((((((.....(&(.&.(((((((&.(.....).&.)))).&)))...)&).((&.....&.(((((....))))).&....))...))))))."
},
"170": {
"contacts": "*****&......***....**...****............*****.....******.....&.........&..&...*.****",
"occurences": 1,
"pdb": [
"1WZ2"
],
"pfam": [
"PF00133",
"PF08264"
],
"sequence": "GCGGG&GUUGCCGAGCCUGGUCAAAGGCGGGGGACUCAAGAUCCCCUCCCGUAGGGGUUCC&GUUCGAAUC&GC&CCCGCACCA",
"struct2d": "(((((&(..(((.......[.....))).(((((.......))))).(((....)))...(&(..]....)&))&)))))...."
},
"768": {
"contacts": "..*.&..........************.....................**..&.....&*****&...&***&.....&....",
"occurences": 1,
"pdb": [
"4UYJ"
],
"pfam": [
"PF02290",
"PF05486"
],
"sequence": "CUAG&CGGGGGGUUCGGCGUCCCCUGUAACCGGAAACCGCCGAUAUGCCGGG&CGAAG&CGAGG&GUU&UUC&CCUCG&CGUG",
"struct2d": "(..(&((((((...[[[[[.)))))....((((....]]]]].....)))))&)...(&(((((&(..&..)&)))))&)..)"
},
"770": {
"contacts": "..*.&..........************.....................**..&.....&****&...&***&....&....",
"occurences": 1,
"pdb": [
"4UYK"
],
"pfam": [
"PF02290",
"PF05486"
],
"sequence": "CUAG&CGGGGGGUUCGGCGUCCCCUGUAACCGGAAACCGCCGAUAUGCCGGG&CGAAG&CGAG&GUU&UUC&CUCG&CGUG",
"struct2d": "(..(&((((((...[[[[[.)))))....((((....]]]]].....)))))&)...(&((((&(..&..)&))))&)..)"
},
"266": {
"contacts": "***************************************************************************************************",
"occurences": 1,
"pdb": [
"2GTT"
],
"pfam": [
"PF00945"
],
"sequence": "CCCCCCCACCCACAAAAACCACAACACCCACAAACCCAAAAAACCCCACAACCCCCCCACACCCCACCAACCCCACAAACCCCACACACCCCACAAAAC",
"struct2d": "..................................................................................................."
},
"267": {
"contacts": "***************************************************************************************************",
"occurences": 1,
"pdb": [
"2GTT"
],
"pfam": [
"PF00945"
],
"sequence": "CCACCAACCCCACACACCCCCCCACCCCCACCCACCACACAAAACCCCCAAAACCCCCCCAACCCCCAAACCCCACCAACCCCACCAACCCCACAAACC",
"struct2d": "..................................................................................................."
},
"766": {
"contacts": "***************************************************..********",
"occurences": 1,
"pdb": [
"4U7U"
],
"pfam": [
"PF08798",
"PF09344",
"PF09481",
"PF09485",
"PF09704"
],
"sequence": "AUAAACCGGGCUCCCUGUCGGUUGUAAUUGAUAAUGUUGAGAGUUCCCCGCGCCAGCGGGG",
"struct2d": ".............................................((((((....))))))"
},
"851": {
"contacts": "***************************************************...*******",
"occurences": 1,
"pdb": [
"5CD4"
],
"pfam": [
"PF08798",
"PF09344",
"PF09481",
"PF09485",
"PF09704"
],
"sequence": "AUAAACCGACGGUAUUGUUCAGAUCCUGGCUUGCCAACAGGAGUUCCCCGCGCCAGCGGGG",
"struct2d": ".............................................((((((....))))))"
},
"948": {
"contacts": "******************************************",
"occurences": 1,
"pdb": [
"5O7H"
],
"pfam": [
"PF09618"
],
"sequence": "CUUAGAAAGCAAACCUAUAACCGUUCACCGCCGCACAGGCGG",
"struct2d": "...........................(((((.....)))))"
},
"972": {
"contacts": "******************************************",
"occurences": 1,
"pdb": [
"5WLH"
],
"pfam": [
"UNK81"
],
"sequence": "GAAGAUAGCCCAAGAAAGAGGGCAAUAACCAGAUAUAGCCUG",
"struct2d": "......(((((........))))..)................"
},
}