gros_motifs_test2.json
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{
"159": {
"contacts": "..&************&**&.&******.*.****..***.****************&..&.****.&...*****...**...*****&....*******",
"occurences": 1,
"pdb": [
"1VQ6"
],
"pfam": [
"PF00181",
"PF00237",
"PF00238",
"PF00252",
"PF00276",
"PF00281",
"PF00297",
"PF00298",
"PF00327",
"PF00347",
"PF00466",
"PF00467",
"PF00572",
"PF00573",
"PF00673",
"PF00827",
"PF00828",
"PF00831",
"PF00832",
"PF00935",
"PF01157",
"PF01198",
"PF01246",
"PF01248",
"PF01280",
"PF01655",
"PF01780",
"PF01907",
"PF03947",
"PF16906",
"PF17144"
],
"sequence": "UU&GGCGGCCACAGC&GU&G&GCCUCCCGUACCCAUCCCGAACACGGAAGAUAAGC&AC&GCGUUC&CUGGAGUGCGCGAGCCUCUGG&GUUCGCCGCCA",
"struct2d": "..&((((((....((&((&(&...((((((...(.....)...))))..))....)&))&))...(&((((((.((....))))))))&)...))))))."
},
"122": {
"contacts": "***************&.&*&*****.******..***.****************&...&.****.&...*****..***...*****&....*******",
"occurences": 1,
"pdb": [
"1Q81",
"1Q82",
"3CPW"
],
"pfam": [
"PF00181",
"PF00237",
"PF00238",
"PF00252",
"PF00276",
"PF00281",
"PF00297",
"PF00327",
"PF00347",
"PF00466",
"PF00467",
"PF00572",
"PF00573",
"PF00673",
"PF00827",
"PF00828",
"PF00831",
"PF00832",
"PF00935",
"PF01157",
"PF01198",
"PF01246",
"PF01248",
"PF01280",
"PF01655",
"PF01780",
"PF01907",
"PF03947",
"PF16906",
"PF17144"
],
"sequence": "GGCGGCCACAGCGGU&G&U&CCUCCCGUACCCAUCCCGAACACGGAAGAUAAGC&ACC&GCGUUC&CUGGAGUGCGCGAGCCUCUGG&GUUCGCCGCCA",
"struct2d": "((((((....(((((&(&.&..((((((...(.....)...))))..))....)&)))&))...(&((((((.((....))))))))&)...))))))."
},
"264": {
"contacts": "***************************************************************************************************",
"occurences": 1,
"pdb": [
"2GTT"
],
"pfam": [
"PF00945"
],
"sequence": "CCCCCCCACCCACAAAAACCACAACACCCACAAACCCAAAAAACCCCACAACCCCCCCACACCCCACCAACCCCACAAACCCCACACACCCCACAAAAC",
"struct2d": "..................................................................................................."
},
"265": {
"contacts": "***************************************************************************************************",
"occurences": 1,
"pdb": [
"2GTT"
],
"pfam": [
"PF00945"
],
"sequence": "CCACCAACCCCACACACCCCCCCACCCCCACCCACCACACAAAACCCCCAAAACCCCCCCAACCCCCAAACCCCACCAACCCCACCAACCCCACAAACC",
"struct2d": "..................................................................................................."
},
"109": {
"contacts": "***************&.&************..***.****************&...&.****.&...*****...**...*****&....*******",
"occurences": 2,
"pdb": [
"1N8R",
"1W2B"
],
"pfam": [
"PF00181",
"PF00237",
"PF00238",
"PF00252",
"PF00276",
"PF00281",
"PF00297",
"PF00327",
"PF00347",
"PF00466",
"PF00467",
"PF00572",
"PF00573",
"PF00673",
"PF00827",
"PF00828",
"PF00831",
"PF00832",
"PF00935",
"PF01157",
"PF01198",
"PF01246",
"PF01248",
"PF01280",
"PF01655",
"PF01780",
"PF01907",
"PF03947",
"PF05697",
"PF16906",
"PF17144"
],
"sequence": "GGCGGCCACAGCGGU&G&CCUCCCGUACCCAUCCCGAACACGGAAGAUAAGC&ACC&GCGUUC&CUGGAGUGCGCGAGCCUCUGG&GUUCGCCGCCA",
"struct2d": "((((((....(((((&(&..((((((...(.....)...))))..))....)&)))&))...(&((((((.((....))))))))&)...))))))."
},
"762": {
"contacts": "***************************************************..********",
"occurences": 1,
"pdb": [
"4U7U"
],
"pfam": [
"PF08798",
"PF09344",
"PF09481",
"PF09485",
"PF09704"
],
"sequence": "AUAAACCGGGCUCCCUGUCGGUUGUAAUUGAUAAUGUUGAGAGUUCCCCGCGCCAGCGGGG",
"struct2d": ".............................................((((((....))))))"
},
"968": {
"contacts": "******************************************",
"occurences": 1,
"pdb": [
"5WLH"
],
"pfam": [
"UNK81"
],
"sequence": "GAAGAUAGCCCAAGAAAGAGGGCAAUAACCAGAUAUAGCCUG",
"struct2d": "......(((((........))))..)................"
},
"962": {
"contacts": "*****************************************",
"occurences": 2,
"pdb": [
"5W1H"
],
"pfam": [
"UNK75"
],
"sequence": "AAGAUAGCCCAAGAAAGAGGGCAAUAACCAGAUAUAGCCUG",
"struct2d": ".....(((((........))))..)................"
},
"62": {
"contacts": ".*****..********.......*****.**....**",
"occurences": 1,
"pdb": [
"1I6U"
],
"pfam": [
"PF00410"
],
"sequence": "GGGCCCGGUAAGUCUCUUCGGAGAUACUGCCGGGCCC",
"struct2d": "(((((((((.((((((....))))..)))))))))))"
},
}