Louis BECQUEY / biorseo

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log_of_the_run_full.sh 1.97 MB
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python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BLV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BLV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BWYV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BWYV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/EIAV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/EIAV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/FIV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/FIV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TYMV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/KYMV-BP.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CaYMV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CaYMV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PhyMV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PhyMV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/DYMV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/DYMV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/OYMV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/OYMV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CYVV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CYVV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/WCMV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/WCMV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CaYVV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CaYVV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/APLV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/APLV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/EMV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/EMV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/OMV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/OMV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CcTMV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CcTMV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PMMV-I.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PMMV-I.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PaMMV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMVcg.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PMTV2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PMTV2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PCV1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PCV1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PCV2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PCV2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/IPCV1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/IPCV1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSBV1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSBV1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSBV2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSBV2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSBV3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSBV3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BVQ2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BVQ3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BVQ3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PLRV-W.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PLRV-W.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PLRV-S.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PEMV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PEMV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BYDV-NY-RPV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BYDV-NY-RPV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Mo-MuLV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Mo-MuLV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SNV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SNV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Ec_PK1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Ec_PK1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Ec_PK2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Ec_PK2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Ec_PK3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Ec_PK3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Ec_PK4.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Ec_PK4.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMV_PKbulge.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMV_PKbulge.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Ec_16S-PK505_526.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Ec_16S-PK505_526.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TPK-70.28.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TPK-70.28.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Lp_PK1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Lp_PK1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/T4_gene32.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/T4_gene32.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/HDV-It_g.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/HDV-It_g.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/HDV-It_ag.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/HDV-It_ag.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/AKV-MuLV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/AKV-MuLV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/GaLV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/GaLV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/oligo_PK5.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/oligo_PK5.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/FeLV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/FeLV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BaEV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BaEV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Cas-Br-E-MuLV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SRV1_gag_pro.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SRV1_gag_pro.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/T.the_telo.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/T.the_telo.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKc.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKc.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKb.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKb.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKc.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKc.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKb.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKb.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKc.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKc.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKb.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKb.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKc.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKc.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKb.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKb.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKc.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKc.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKb.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKb.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKc.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKc.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKb.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKb.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/STNV1_PK1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/STNV1_PK1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/STNV1_PK2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/STNV1_PK2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/STNV1_PK3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/STNV2_PK3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TRV-PSG.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TRV-PSG.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/NGF-L6.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSMVbeta.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSMVbeta.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMV-L_PKbulge.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMV-L_PKbulge.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CGMMV_PKbulge.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CGMMV_PKbulge.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMGMV_PKbulge.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMGMV_PKbulge.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/STMV_PKbulge.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/STMV_PKbulge.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PMMV-S_PKbulge.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PMMV-S_PKbulge.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Sc_18S-PKE21-7_8.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Sc_18S-PKE21-7_8.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK4.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK4.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK4.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK4.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK5.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK5.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Hs_SRP-pkn.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Hs_SRP-pkn.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PSLVbeta.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PSLVbeta.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CoxB3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CoxB3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BaMV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BaMV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/satRPV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/satRPV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/biotin-PK.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKd.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKd.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKe.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKe.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKf.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKf.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKg.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKg.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKh.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKh.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PSIV_IRES.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PSIV_IRES.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKb.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKb.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKc.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKc.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKd.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKd.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKe.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKe.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKf.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKf.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKg.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKg.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKh.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKh.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKb.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKb.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKi.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKi.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKk.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKk.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKl.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKl.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Pp_18S-PKE23-9_12.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Pp_18S-PKE23-9_12.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Hs_PrP.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Hs_PrP.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Bt_PrP.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Bt_PrP.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Bp_PK2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Bp_PK2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PSIV_IRES-PKIII.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PSIV_IRES-PKIII.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKI.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKI.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKIII.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKIII.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKI.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKI.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PRRSV-16244B.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PRRSV-16244B.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKIII.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKIII.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKI.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKI.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKI.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKI.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKIII.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKIII.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKI.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKI.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKIII.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/GLV_IRES.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/GLV_IRES.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/WNV_PK3end.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/WNV_PK3end.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/DEN2_PK1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/DEN2_PK1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BChV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/BChV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/MMLV_PKb.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/MMLV_PKb.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/HPeV1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/NeRNV_PKa.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/NeRNV_PKa.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/WBV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/WBV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SARS-CoV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Mm_Edr.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Hs_Ma3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Hs_Ma3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CYSDV1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/CTV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PMWaV-2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PMWaV-2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/GLRaV-3.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/GLRaV-3.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SCFaV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SCFaV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/IAV_PK_NS.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/FMDV-A_PKIII.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKI.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKI.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKII.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKII.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/EMCV-R_PKB.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/EMCV-R_PKC.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/EMCV-R_PKC.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Mengo_PKB.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Mengo_PKB.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Mengo_PKC.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/Mengo_PKC.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/HAV_PK1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/HAV_PK2.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/HAV_PK2.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMEV.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/TMEV.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.3a.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.3a.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/antiHIV1-NC_psi-50-1.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/antiHIV1-NC_psi-50-1.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/R2_retroPK.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/R2_retroPK.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBU.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/SBU.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00002.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00002.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00004.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00004.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00005.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00005.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00006.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00006.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00007.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00007.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00010.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00010.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00012.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00012.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00013.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00013.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00014.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00014.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00016.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00016.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00018.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00018.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00019.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00020.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00020.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00021.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00021.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00022.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00022.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00024.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00024.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00065.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00068.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00068.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00069.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00069.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00073.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00073.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00083.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00083.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00084.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00085.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00085.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00086.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00086.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00087.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00087.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00088.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00088.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00089.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00089.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00090.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00090.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00091.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00091.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00092.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00092.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00093.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00093.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00097.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00098.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00098.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00099.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00099.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00100.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00103.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00108.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00108.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00109.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00109.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00110.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00110.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00124.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00124.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00134.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00134.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00135.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00135.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00138.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00138.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00139.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00139.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00141.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00148.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00148.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00155.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00155.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00160.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00160.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00177.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00177.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00180.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00180.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00184.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00184.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00185.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00185.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00186.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00186.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00191.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00191.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00197.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00201.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00201.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00206.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00206.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00209.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00209.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00216.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00216.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00217.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00217.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00218.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00218.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00219.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00219.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00224.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00224.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00229.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00231.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00231.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00240.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00240.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00245.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00256.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00256.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00258.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00258.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00285.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00286.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00286.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00288.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00288.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00289.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00303.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00304.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00304.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00339.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00357.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00361.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00361.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00374.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00376.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00376.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00377.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00377.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00383.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00383.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00402.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00402.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00407.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00407.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00420.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00420.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00474.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00481.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00481.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00487.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00487.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00495.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00495.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00497.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00497.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00513.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00513.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00526.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00526.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00535.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00535.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00547.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00547.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00553.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00574.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00588.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00588.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00590.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00590.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00603.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00617.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00617.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00620.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00620.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00621.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00621.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00627.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00627.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00664.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00664.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00668.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00668.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00669.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00669.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00670.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00670.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00671.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00671.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00672.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00672.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00673.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00691.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00702.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00702.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00705.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00705.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00714.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00715.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00715.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00716.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00716.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00721.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00721.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00727.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00727.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00730.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00730.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00737.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00737.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00742.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00742.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00743.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00743.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00746.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00749.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00749.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00753.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00753.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00754.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00754.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00755.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00755.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00756.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00756.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00757.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00757.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00759.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00759.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00760.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00760.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00762.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00763.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00763.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00764.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00764.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00765.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00765.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00798.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00798.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00809.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00809.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00810.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00810.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00817.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00817.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00818.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00818.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00825.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00825.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00828.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00829.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00831.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00831.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00832.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00832.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00842.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00842.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00843.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00843.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00855.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00855.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00857.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00857.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00858.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00858.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00859.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00859.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00862.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00865.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00865.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00867.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00867.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00869.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00883.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00883.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00884.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00884.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00886.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00888.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00889.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00889.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00890.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00890.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00896.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00901.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00901.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00902.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00902.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00903.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00903.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00921.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00923.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00923.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00926.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00926.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00928.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00930.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00930.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00931.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00931.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00940.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00941.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00942.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00942.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00943.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00943.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00944.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00944.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00945.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00945.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00948.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00948.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00949.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00949.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00950.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00950.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00951.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00951.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00963.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00963.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00964.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00964.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00965.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00965.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00966.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00966.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00970.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00971.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00971.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00972.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00972.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00973.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00975.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00975.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00977.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00977.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00988.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00988.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00990.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00990.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00999.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_00999.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01002.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01002.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01003.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01003.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01004.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01004.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01006.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01007.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01007.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01008.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01008.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01009.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01009.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01010.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01010.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01011.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01011.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01012.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01012.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01013.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01013.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01020.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01021.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01022.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01022.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01023.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01023.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01024.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01024.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01025.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01025.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01026.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01026.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01040.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01040.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01042.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01042.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01044.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01044.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01046.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01047.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01047.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01048.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01048.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01049.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01049.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01050.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01050.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01051.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01053.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01053.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01056.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01056.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01057.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01057.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01058.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01058.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01059.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01059.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01066.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01066.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01074.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01074.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01084.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01084.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01086.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01097.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01097.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01108.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01108.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01111.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01111.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01112.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01112.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01113.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01114.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01114.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01115.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01115.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01116.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01116.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01118.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01118.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01126.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01126.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01130.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01130.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01133.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01133.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01134.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01134.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01135.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01136.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01137.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01137.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01138.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01138.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01145.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01145.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01146.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01147.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01147.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01148.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01148.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01149.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01149.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01151.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01151.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01152.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01152.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01165.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01165.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01168.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01168.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01185.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01185.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01190.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01190.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01194.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01194.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01199.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01199.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01202.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01202.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01205.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01205.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01206.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01206.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01237.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01237.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01238.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01238.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01239.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01239.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01258.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01258.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01259.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01259.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01262.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01262.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01270.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01270.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01281.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01281.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01299.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01299.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01313.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01313.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01332.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01332.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01337.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01337.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01338.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01338.fa -samplesize 1000 -d 3dMotifAtlas_ALL
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01340.fa -samplesize 1000 -d rna3dmotif
python3.7 -W ignore parse_sequences.py -seq /home/ldurand/biorseo/benchmark_results/PDB_01340.fa -samplesize 1000 -d 3dMotifAtlas_ALL
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BLV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BLV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BLV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BLV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BLV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BLV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BLV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BLV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BLV.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/BLV.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BWYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BWYV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BWYV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BWYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BWYV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BWYV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BWYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BWYV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BWYV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BWYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BWYV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BWYV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BWYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BWYV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BWYV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BWYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BWYV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BWYV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BWYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BWYV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BWYV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BWYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BWYV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BWYV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EIAV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EIAV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EIAV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EIAV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EIAV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EIAV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EIAV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EIAV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EIAV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EIAV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EIAV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EIAV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EIAV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EIAV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EIAV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EIAV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EIAV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EIAV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EIAV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EIAV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EIAV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EIAV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EIAV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EIAV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EIAV.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/EIAV.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FIV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FIV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FIV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FIV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FIV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FIV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FIV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FIV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FIV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FIV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FIV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FIV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FIV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FIV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FIV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FIV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TYMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TYMV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TYMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TYMV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TYMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TYMV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TYMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TYMV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TYMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TYMV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TYMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TYMV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TYMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TYMV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TYMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TYMV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/KYMV-BP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/KYMV-BP.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/KYMV-BP.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/KYMV-BP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/KYMV-BP.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/KYMV-BP.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/KYMV-BP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/KYMV-BP.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/KYMV-BP.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/KYMV-BP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/KYMV-BP.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/KYMV-BP.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/KYMV-BP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/KYMV-BP.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/KYMV-BP.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/KYMV-BP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/KYMV-BP.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/KYMV-BP.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/KYMV-BP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/KYMV-BP.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/KYMV-BP.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/KYMV-BP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/KYMV-BP.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/KYMV-BP.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CaYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CaYMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CaYMV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CaYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CaYMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CaYMV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CaYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CaYMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CaYMV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CaYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CaYMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CaYMV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CaYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CaYMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CaYMV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CaYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CaYMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CaYMV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CaYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CaYMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CaYMV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CaYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CaYMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CaYMV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PhyMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PhyMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PhyMV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PhyMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PhyMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PhyMV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PhyMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PhyMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PhyMV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PhyMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PhyMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PhyMV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PhyMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PhyMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PhyMV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PhyMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PhyMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PhyMV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PhyMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PhyMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PhyMV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PhyMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PhyMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PhyMV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DYMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DYMV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DYMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DYMV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DYMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DYMV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DYMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DYMV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DYMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DYMV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DYMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DYMV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DYMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DYMV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DYMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DYMV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/OYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/OYMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/OYMV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/OYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/OYMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/OYMV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/OYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/OYMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/OYMV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/OYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/OYMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/OYMV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/OYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/OYMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/OYMV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/OYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/OYMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/OYMV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/OYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/OYMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/OYMV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/OYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/OYMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/OYMV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/OYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/OYMV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/OYMV.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/OYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/OYMV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/OYMV.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/OYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/OYMV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/OYMV.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/OYMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/OYMV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/OYMV.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYVV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYVV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYVV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYVV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYVV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYVV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYVV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYVV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYVV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYVV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYVV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYVV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYVV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYVV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYVV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYVV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYVV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYVV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYVV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYVV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYVV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYVV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYVV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYVV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WCMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WCMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WCMV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WCMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WCMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WCMV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WCMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WCMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WCMV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WCMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WCMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WCMV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WCMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WCMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WCMV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WCMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WCMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WCMV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WCMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WCMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WCMV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WCMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WCMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WCMV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CaYVV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CaYVV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CaYVV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CaYVV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CaYVV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CaYVV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CaYVV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CaYVV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CaYVV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CaYVV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CaYVV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CaYVV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CaYVV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CaYVV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CaYVV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CaYVV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CaYVV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CaYVV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CaYVV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CaYVV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CaYVV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CaYVV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CaYVV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CaYVV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/APLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/APLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/APLV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/APLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/APLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/APLV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/APLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/APLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/APLV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/APLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/APLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/APLV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/APLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/APLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/APLV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/APLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/APLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/APLV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/APLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/APLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/APLV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/APLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/APLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/APLV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/OMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/OMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/OMV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/OMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/OMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/OMV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/OMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/OMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/OMV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/OMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/OMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/OMV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/OMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/OMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/OMV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/OMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/OMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/OMV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/OMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/OMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/OMV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/OMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/OMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/OMV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-I.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-I.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-I.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-I.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-I.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-I.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-I.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-I.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-I.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-I.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-I.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-I.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-I.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-I.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-I.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-I.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-I.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-I.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-I.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-I.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-I.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-I.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-I.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-I.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PaMMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PaMMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PaMMV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PaMMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PaMMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PaMMV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PaMMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PaMMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PaMMV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PaMMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PaMMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PaMMV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PaMMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PaMMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PaMMV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PaMMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PaMMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PaMMV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PaMMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PaMMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PaMMV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PaMMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PaMMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PaMMV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TVCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TVCV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TVCV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TVCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TVCV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TVCV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TVCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TVCV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TVCV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TVCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TVCV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TVCV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TVCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TVCV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TVCV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TVCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TVCV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TVCV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TVCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TVCV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TVCV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TVCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TVCV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TVCV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TVCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TVCV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TVCV.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TVCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TVCV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TVCV.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TVCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TVCV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TVCV.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TVCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TVCV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TVCV.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORMV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORMV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORMV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORMV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORMV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORMV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORMV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORMV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORMV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORMV.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORMV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORMV.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORMV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORMV.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORMV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORMV.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMVcg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMVcg.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMVcg.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMVcg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMVcg.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMVcg.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMVcg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMVcg.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMVcg.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMVcg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMVcg.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMVcg.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMVcg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMVcg.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMVcg.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMVcg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMVcg.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMVcg.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMVcg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMVcg.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMVcg.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMVcg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMVcg.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMVcg.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMVcg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMVcg.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMVcg.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMVcg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMVcg.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMVcg.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMVcg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMVcg.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMVcg.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMVcg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMVcg.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMVcg.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMTV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMTV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMTV2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMTV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMTV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMTV2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMTV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMTV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMTV2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMTV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMTV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMTV2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMTV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMTV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMTV2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMTV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMTV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMTV2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMTV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMTV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMTV2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMTV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMTV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMTV2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PCV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PCV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PCV1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PCV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PCV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PCV1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PCV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PCV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PCV1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PCV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PCV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PCV1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PCV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PCV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PCV1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PCV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PCV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PCV1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PCV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PCV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PCV1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PCV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PCV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PCV1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PCV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PCV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PCV2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PCV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PCV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PCV2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PCV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PCV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PCV2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PCV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PCV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PCV2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PCV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PCV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PCV2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PCV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PCV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PCV2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PCV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PCV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PCV2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PCV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PCV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PCV2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IPCV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IPCV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IPCV1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IPCV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IPCV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IPCV1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IPCV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IPCV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IPCV1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IPCV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IPCV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IPCV1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IPCV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IPCV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IPCV1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IPCV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IPCV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IPCV1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IPCV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IPCV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IPCV1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IPCV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IPCV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IPCV1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PLRV-W.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PLRV-W.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PLRV-W.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PLRV-W.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PLRV-W.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PLRV-W.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PLRV-W.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PLRV-W.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PLRV-W.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PLRV-W.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PLRV-W.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PLRV-W.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PLRV-W.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PLRV-W.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PLRV-W.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PLRV-W.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PLRV-W.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PLRV-W.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PLRV-W.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PLRV-W.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PLRV-W.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PLRV-W.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PLRV-W.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PLRV-W.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PLRV-S.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PLRV-S.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PLRV-S.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PLRV-S.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PLRV-S.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PLRV-S.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PLRV-S.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PLRV-S.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PLRV-S.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PLRV-S.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PLRV-S.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PLRV-S.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PLRV-S.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PLRV-S.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PLRV-S.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PLRV-S.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PLRV-S.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PLRV-S.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PLRV-S.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PLRV-S.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PLRV-S.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PLRV-S.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PLRV-S.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PLRV-S.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CABYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CABYV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CABYV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CABYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CABYV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CABYV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CABYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CABYV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CABYV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CABYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CABYV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CABYV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CABYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CABYV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CABYV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CABYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CABYV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CABYV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CABYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CABYV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CABYV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CABYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CABYV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CABYV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PEMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PEMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PEMV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PEMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PEMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PEMV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PEMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PEMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PEMV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PEMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PEMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PEMV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PEMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PEMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PEMV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PEMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PEMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PEMV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PEMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PEMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PEMV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PEMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PEMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PEMV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BYDV-NY-RPV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BYDV-NY-RPV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BYDV-NY-RPV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BYDV-NY-RPV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BYDV-NY-RPV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BYDV-NY-RPV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BYDV-NY-RPV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BYDV-NY-RPV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BYDV-NY-RPV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BYDV-NY-RPV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BYDV-NY-RPV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BYDV-NY-RPV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BYDV-NY-RPV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BYDV-NY-RPV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BYDV-NY-RPV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BYDV-NY-RPV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BYDV-NY-RPV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BYDV-NY-RPV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BYDV-NY-RPV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BYDV-NY-RPV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BYDV-NY-RPV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BYDV-NY-RPV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BYDV-NY-RPV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BYDV-NY-RPV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mo-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mo-MuLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mo-MuLV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mo-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mo-MuLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mo-MuLV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mo-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mo-MuLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mo-MuLV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mo-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mo-MuLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mo-MuLV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mo-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mo-MuLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mo-MuLV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mo-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mo-MuLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mo-MuLV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mo-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mo-MuLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mo-MuLV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mo-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mo-MuLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mo-MuLV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SNV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SNV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SNV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SNV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SNV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SNV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SNV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SNV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SNV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SNV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SNV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SNV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SNV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SNV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SNV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SNV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SNV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SNV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SNV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SNV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SNV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SNV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SNV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SNV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK2.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK2.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK4.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK4.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK4.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK4.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK4.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK4.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK4.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK4.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK4.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK4.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK4.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK4.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK4.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK4.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_PK4.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_PK4.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_UPD-PK3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_PKbulge.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_PKbulge.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_PKbulge.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_PKbulge.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_PKbulge.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_PKbulge.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_PKbulge.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV_PKbulge.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV_PKbulge.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/TMV_PKbulge.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD1-PK3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD1-PK3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD1-PK3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD1-PK3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD1-PK3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD1-PK3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD1-PK3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD1-PK3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD1-PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD1-PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD1-PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD1-PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD1-PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD1-PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD1-PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD1-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD1-PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD2-PK3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD2-PK3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD2-PK3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD2-PK3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD2-PK3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD2-PK3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD2-PK3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD2-PK3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD2-PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD2-PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD2-PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD2-PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD2-PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD2-PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD2-PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD2-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD2-PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK3.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK3.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK3.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK3.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK3.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_UPD3-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_UPD3-PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_16S-PK505_526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_16S-PK505_526.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_16S-PK505_526.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_16S-PK505_526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_16S-PK505_526.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_16S-PK505_526.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_16S-PK505_526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_16S-PK505_526.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_16S-PK505_526.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_16S-PK505_526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_16S-PK505_526.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_16S-PK505_526.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_16S-PK505_526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_16S-PK505_526.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_16S-PK505_526.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_16S-PK505_526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_16S-PK505_526.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_16S-PK505_526.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_16S-PK505_526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_16S-PK505_526.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_16S-PK505_526.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_16S-PK505_526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_16S-PK505_526.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_16S-PK505_526.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TPK-70.28.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TPK-70.28.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TPK-70.28.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TPK-70.28.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TPK-70.28.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TPK-70.28.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TPK-70.28.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TPK-70.28.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TPK-70.28.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TPK-70.28.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TPK-70.28.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TPK-70.28.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TPK-70.28.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TPK-70.28.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TPK-70.28.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TPK-70.28.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TPK-70.28.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TPK-70.28.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TPK-70.28.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TPK-70.28.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TPK-70.28.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TPK-70.28.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TPK-70.28.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TPK-70.28.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK4.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK4.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK4.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK4.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK4.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK4.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK4.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK4.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK4.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK4.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK4.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK4.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK4.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK4.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Lp_PK4.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK4.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Lp_PK4.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/Lp_PK4.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_S15.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_S15.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_S15.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_S15.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_S15.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_S15.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_S15.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_S15.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_S15.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_S15.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_S15.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_S15.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_S15.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_S15.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_S15.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_S15.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_S15.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_S15.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_S15.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_S15.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_S15.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_S15.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Ec_S15.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Ec_S15.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_S15.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/Ec_S15.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Ec_S15.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/Ec_S15.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T2_gene32.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T2_gene32.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T2_gene32.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T2_gene32.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T2_gene32.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T2_gene32.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T2_gene32.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T2_gene32.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T2_gene32.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T2_gene32.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T2_gene32.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T2_gene32.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T2_gene32.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T2_gene32.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T2_gene32.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T2_gene32.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T2_gene32.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T2_gene32.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T2_gene32.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T2_gene32.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T2_gene32.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T2_gene32.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T2_gene32.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T2_gene32.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T4_gene32.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T4_gene32.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T4_gene32.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T4_gene32.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T4_gene32.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T4_gene32.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T4_gene32.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T4_gene32.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T4_gene32.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T4_gene32.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T4_gene32.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T4_gene32.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T4_gene32.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T4_gene32.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T4_gene32.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T4_gene32.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T4_gene32.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T4_gene32.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T4_gene32.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T4_gene32.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T4_gene32.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T4_gene32.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T4_gene32.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T4_gene32.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HDV-It_g.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HDV-It_g.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HDV-It_g.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HDV-It_g.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HDV-It_g.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HDV-It_g.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HDV-It_g.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HDV-It_g.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HDV-It_g.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HDV-It_g.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HDV-It_g.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HDV-It_g.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HDV-It_g.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HDV-It_g.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HDV-It_g.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HDV-It_g.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HDV-It_g.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HDV-It_g.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HDV-It_g.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HDV-It_g.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HDV-It_g.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HDV-It_g.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HDV-It_g.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HDV-It_g.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HDV-It_g.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HDV-It_g.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HDV-It_g.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HDV-It_g.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HDV-It_g.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HDV-It_g.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HDV-It_ag.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HDV-It_ag.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HDV-It_ag.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HDV-It_ag.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HDV-It_ag.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HDV-It_ag.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HDV-It_ag.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HDV-It_ag.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HDV-It_ag.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HDV-It_ag.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HDV-It_ag.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HDV-It_ag.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HDV-It_ag.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HDV-It_ag.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HDV-It_ag.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HDV-It_ag.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HDV-It_ag.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HDV-It_ag.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HDV-It_ag.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HDV-It_ag.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HDV-It_ag.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HDV-It_ag.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HDV-It_ag.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HDV-It_ag.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HDV-It_ag.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HDV-It_ag.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HDV-It_ag.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HDV-It_ag.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HDV-It_ag.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HDV-It_ag.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/AKV-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/AKV-MuLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/AKV-MuLV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/AKV-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/AKV-MuLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/AKV-MuLV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/AKV-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/AKV-MuLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/AKV-MuLV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/AKV-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/AKV-MuLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/AKV-MuLV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/AKV-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/AKV-MuLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/AKV-MuLV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/AKV-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/AKV-MuLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/AKV-MuLV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/AKV-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/AKV-MuLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/AKV-MuLV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/AKV-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/AKV-MuLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/AKV-MuLV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GaLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GaLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GaLV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GaLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GaLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GaLV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GaLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GaLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GaLV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GaLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GaLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GaLV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GaLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GaLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GaLV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GaLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GaLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GaLV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GaLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GaLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GaLV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GaLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GaLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GaLV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MMTV_gag_pro.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MMTV_gag_pro.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MMTV_gag_pro.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MMTV_gag_pro.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MMTV_gag_pro.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MMTV_gag_pro.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MMTV_gag_pro.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MMTV_gag_pro.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MMTV_gag_pro.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MMTV_gag_pro.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MMTV_gag_pro.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MMTV_gag_pro.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MMTV_gag_pro.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MMTV_gag_pro.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MMTV_gag_pro.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MMTV_gag_pro.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MMTV_gag_pro.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MMTV_gag_pro.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MMTV_gag_pro.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MMTV_gag_pro.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MMTV_gag_pro.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MMTV_gag_pro.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MMTV_gag_pro.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MMTV_gag_pro.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MMTV_gag_pro.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/MMTV_gag_pro.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/oligo_PK5.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/oligo_PK5.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/oligo_PK5.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/oligo_PK5.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/oligo_PK5.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/oligo_PK5.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/oligo_PK5.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/oligo_PK5.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/oligo_PK5.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/oligo_PK5.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/oligo_PK5.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/oligo_PK5.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/oligo_PK5.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/oligo_PK5.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/oligo_PK5.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/oligo_PK5.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/oligo_PK5.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/oligo_PK5.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/oligo_PK5.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/oligo_PK5.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/oligo_PK5.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/oligo_PK5.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/oligo_PK5.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/oligo_PK5.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/oligo_PK5.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/oligo_PK5.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/oligo_PK5.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/oligo_PK5.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/oligo_PK5.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/oligo_PK5.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/oligo_PK5.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/oligo_PK5.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/oligo_PK5.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/oligo_PK5.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/oligo_PK5.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/oligo_PK5.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_UPD-PK3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CcTMV_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CcTMV_UPD-PK3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FeLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FeLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FeLV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FeLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FeLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FeLV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FeLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FeLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FeLV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FeLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FeLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FeLV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FeLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FeLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FeLV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FeLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FeLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FeLV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FeLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FeLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FeLV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FeLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FeLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FeLV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_UPD-PK3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_UPD-PK3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_UPD-PK3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BaEV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BaEV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BaEV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BaEV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BaEV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BaEV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BaEV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BaEV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BaEV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BaEV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BaEV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BaEV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BaEV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BaEV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BaEV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BaEV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BaEV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BaEV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BaEV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BaEV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BaEV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BaEV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BaEV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BaEV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Cas-Br-E-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Cas-Br-E-MuLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Cas-Br-E-MuLV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Cas-Br-E-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Cas-Br-E-MuLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Cas-Br-E-MuLV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Cas-Br-E-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Cas-Br-E-MuLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Cas-Br-E-MuLV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Cas-Br-E-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Cas-Br-E-MuLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Cas-Br-E-MuLV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Cas-Br-E-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Cas-Br-E-MuLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Cas-Br-E-MuLV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Cas-Br-E-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Cas-Br-E-MuLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Cas-Br-E-MuLV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Cas-Br-E-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Cas-Br-E-MuLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Cas-Br-E-MuLV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Cas-Br-E-MuLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Cas-Br-E-MuLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Cas-Br-E-MuLV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK2.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK2.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK2.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD2-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD2-PK3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK1.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK1.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK1.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK1.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK1.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_UPD1-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_UPD1-PK3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SRV1_gag_pro.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SRV1_gag_pro.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SRV1_gag_pro.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SRV1_gag_pro.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SRV1_gag_pro.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SRV1_gag_pro.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SRV1_gag_pro.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SRV1_gag_pro.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SRV1_gag_pro.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SRV1_gag_pro.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SRV1_gag_pro.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SRV1_gag_pro.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SRV1_gag_pro.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SRV1_gag_pro.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SRV1_gag_pro.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SRV1_gag_pro.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SRV1_gag_pro.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SRV1_gag_pro.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SRV1_gag_pro.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SRV1_gag_pro.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SRV1_gag_pro.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SRV1_gag_pro.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SRV1_gag_pro.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SRV1_gag_pro.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T.the_telo.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T.the_telo.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T.the_telo.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T.the_telo.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T.the_telo.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T.the_telo.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T.the_telo.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T.the_telo.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T.the_telo.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T.the_telo.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T.the_telo.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T.the_telo.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T.the_telo.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T.the_telo.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T.the_telo.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T.the_telo.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T.the_telo.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T.the_telo.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T.the_telo.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T.the_telo.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T.the_telo.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/T.the_telo.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/T.the_telo.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/T.the_telo.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1_UPD-PKc.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1_UPD-PKc.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1_UPD-PKc.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1_UPD-PKc.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1_UPD-PKc.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1_UPD-PKc.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1_UPD-PKc.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1_UPD-PKc.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1_UPD-PKb.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1_UPD-PKb.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1_UPD-PKb.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1_UPD-PKb.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1_UPD-PKb.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1_UPD-PKb.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1_UPD-PKb.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ1_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ1_UPD-PKb.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2_UPD-PKc.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2_UPD-PKc.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2_UPD-PKc.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2_UPD-PKc.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2_UPD-PKc.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2_UPD-PKc.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2_UPD-PKc.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2_UPD-PKc.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2_UPD-PKb.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2_UPD-PKb.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2_UPD-PKb.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2_UPD-PKb.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2_UPD-PKb.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2_UPD-PKb.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2_UPD-PKb.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ2_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ2_UPD-PKb.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3_UPD-PKc.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3_UPD-PKc.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3_UPD-PKc.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3_UPD-PKc.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3_UPD-PKc.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3_UPD-PKc.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3_UPD-PKc.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3_UPD-PKc.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3_UPD-PKb.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3_UPD-PKb.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3_UPD-PKb.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3_UPD-PKb.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3_UPD-PKb.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3_UPD-PKb.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3_UPD-PKb.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BVQ3_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BVQ3_UPD-PKb.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1_UPD-PKc.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1_UPD-PKc.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1_UPD-PKc.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1_UPD-PKc.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1_UPD-PKc.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1_UPD-PKc.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1_UPD-PKc.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1_UPD-PKc.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1_UPD-PKb.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1_UPD-PKb.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1_UPD-PKb.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1_UPD-PKb.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1_UPD-PKb.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1_UPD-PKb.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1_UPD-PKb.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV1_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV1_UPD-PKb.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2_UPD-PKc.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2_UPD-PKc.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2_UPD-PKc.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2_UPD-PKc.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2_UPD-PKc.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2_UPD-PKc.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2_UPD-PKc.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2_UPD-PKc.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2_UPD-PKb.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2_UPD-PKb.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2_UPD-PKb.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2_UPD-PKb.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2_UPD-PKb.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2_UPD-PKb.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2_UPD-PKb.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV2_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV2_UPD-PKb.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3_UPD-PKc.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3_UPD-PKc.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3_UPD-PKc.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3_UPD-PKc.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3_UPD-PKc.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3_UPD-PKc.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3_UPD-PKc.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3_UPD-PKc.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3_UPD-PKb.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3_UPD-PKb.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3_UPD-PKb.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3_UPD-PKb.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3_UPD-PKb.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3_UPD-PKb.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3_UPD-PKb.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSBV3_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSBV3_UPD-PKb.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV1_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV1_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV1_PK3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STNV2_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STNV2_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STNV2_PK3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NGF-H1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NGF-H1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NGF-H1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NGF-H1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NGF-H1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NGF-H1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NGF-H1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NGF-H1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NGF-H1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NGF-H1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NGF-H1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NGF-H1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NGF-H1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NGF-H1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NGF-H1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NGF-H1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NGF-H1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NGF-H1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NGF-H1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NGF-H1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NGF-H1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NGF-H1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NGF-H1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NGF-H1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NGF-L2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NGF-L2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NGF-L2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NGF-L2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NGF-L2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NGF-L2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NGF-L2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NGF-L2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NGF-L2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NGF-L2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NGF-L2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NGF-L2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NGF-L6.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NGF-L6.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NGF-L6.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NGF-L6.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NGF-L6.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NGF-L6.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NGF-L6.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NGF-L6.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NGF-L6.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NGF-L6.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NGF-L6.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NGF-L6.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NGF-L6.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NGF-L6.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NGF-L6.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NGF-L6.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NGF-L6.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NGF-L6.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NGF-L6.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NGF-L6.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NGF-L6.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NGF-L6.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NGF-L6.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NGF-L6.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_PKbulge.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_PKbulge.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_PKbulge.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_PKbulge.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_PKbulge.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_PKbulge.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_PKbulge.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMV-L_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMV-L_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMV-L_PKbulge.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_PKbulge.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_PKbulge.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_PKbulge.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_PKbulge.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_PKbulge.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_PKbulge.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_PKbulge.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CGMMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CGMMV_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CGMMV_PKbulge.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_PKbulge.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_PKbulge.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_PKbulge.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_PKbulge.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_PKbulge.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_PKbulge.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_PKbulge.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMGMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMGMV_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMGMV_PKbulge.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_PKbulge.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_PKbulge.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_PKbulge.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_PKbulge.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_PKbulge.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_PKbulge.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_PKbulge.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/STMV_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/STMV_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/STMV_PKbulge.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_PKbulge.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_PKbulge.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_PKbulge.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_PKbulge.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_PKbulge.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_PKbulge.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_PKbulge.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_PKbulge.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMMV-S_PKbulge.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMMV-S_PKbulge.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMMV-S_PKbulge.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge2.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge2.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ORSV-S1_PKbulge3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ORSV-S1_PKbulge3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Sc_18S-PKE21-7_8.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Sc_18S-PKE21-7_8.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Sc_18S-PKE21-7_8.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Sc_18S-PKE21-7_8.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Sc_18S-PKE21-7_8.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Sc_18S-PKE21-7_8.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Sc_18S-PKE21-7_8.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Sc_18S-PKE21-7_8.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Sc_18S-PKE21-7_8.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Sc_18S-PKE21-7_8.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Sc_18S-PKE21-7_8.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Sc_18S-PKE21-7_8.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Sc_18S-PKE21-7_8.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Sc_18S-PKE21-7_8.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Sc_18S-PKE21-7_8.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Sc_18S-PKE21-7_8.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Sc_18S-PKE21-7_8.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Sc_18S-PKE21-7_8.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Sc_18S-PKE21-7_8.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Sc_18S-PKE21-7_8.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Sc_18S-PKE21-7_8.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Sc_18S-PKE21-7_8.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Sc_18S-PKE21-7_8.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Sc_18S-PKE21-7_8.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BSMVbeta_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BSMVbeta_UPD-PK3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK1.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK1.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK1.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK1.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK1.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK4.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK4.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK4.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK4.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK4.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK4.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK4.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK4.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK4.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK4.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK4.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK4.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK4.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK4.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BMV3_UPD-PK4.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BMV3_UPD-PK4.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK4.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK4.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK4.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK4.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK4.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK4.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK4.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK4.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK4.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK4.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK4.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK4.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK4.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK4.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK4.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK4.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK4.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK5.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK5.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK5.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK5.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK5.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK5.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK5.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK5.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK5.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK5.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK5.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK5.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK5.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK5.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK5.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK5.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK5.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK5.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK5.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK5.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK5.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK5.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TRV-PSG2_PK5.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TRV-PSG2_PK5.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_SRP-pkn.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_SRP-pkn.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_SRP-pkn.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_SRP-pkn.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_SRP-pkn.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_SRP-pkn.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_SRP-pkn.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_SRP-pkn.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_SRP-pkn.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_SRP-pkn.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_SRP-pkn.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_SRP-pkn.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_SRP-pkn.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_SRP-pkn.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_SRP-pkn.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_SRP-pkn.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_SRP-pkn.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_SRP-pkn.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_SRP-pkn.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_SRP-pkn.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_SRP-pkn.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_SRP-pkn.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_SRP-pkn.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_SRP-pkn.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSLVbeta_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSLVbeta_UPD-PK3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CoxB3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CoxB3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CoxB3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CoxB3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CoxB3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CoxB3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CoxB3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CoxB3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CoxB3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CoxB3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CoxB3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CoxB3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CoxB3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CoxB3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CoxB3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CoxB3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CoxB3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CoxB3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CoxB3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CoxB3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CoxB3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CoxB3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CoxB3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CoxB3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CoxB3.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/CoxB3.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BaMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BaMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BaMV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BaMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BaMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BaMV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BaMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BaMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BaMV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BaMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BaMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BaMV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BaMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BaMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BaMV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BaMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BaMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BaMV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BaMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BaMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BaMV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BaMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BaMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BaMV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BaMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BaMV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BaMV.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BaMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BaMV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BaMV.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BaMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BaMV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BaMV.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BaMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BaMV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BaMV.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/satRPV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/satRPV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/satRPV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/satRPV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/satRPV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/satRPV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/satRPV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/satRPV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/satRPV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/satRPV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/satRPV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/satRPV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/satRPV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/satRPV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/satRPV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/satRPV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/satRPV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/satRPV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/satRPV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/satRPV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/satRPV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/satRPV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/satRPV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/satRPV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/satRPV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/satRPV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/satRPV.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/satRPV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/satRPV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/satRPV.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/biotin-PK.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/biotin-PK.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/biotin-PK.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/biotin-PK.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/biotin-PK.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/biotin-PK.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/biotin-PK.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/biotin-PK.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/biotin-PK.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/biotin-PK.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/biotin-PK.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/biotin-PK.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/biotin-PK.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/biotin-PK.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/biotin-PK.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/biotin-PK.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/biotin-PK.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/biotin-PK.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/biotin-PK.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/biotin-PK.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/biotin-PK.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/biotin-PK.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/biotin-PK.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/biotin-PK.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/biotin-PK.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/biotin-PK.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/biotin-PK.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/biotin-PK-AN69.1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/biotin-PK-AN69.1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/biotin-PK-AN69.1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/biotin-PK-AN69.1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/biotin-PK-AN69.1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/biotin-PK-AN69.1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/biotin-PK-AN69.1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/biotin-PK-AN69.1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/biotin-PK-AN69.1.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/biotin-PK-AN69.1.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/biotin-PK-AN69.1.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/biotin-PK-AN69.1.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/biotin-PK-AN69.1.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Rr_ODCanti.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Rr_ODCanti.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Rr_ODCanti.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Rr_ODCanti.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Rr_ODCanti.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Rr_ODCanti.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Rr_ODCanti.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Rr_ODCanti.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Rr_ODCanti.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Rr_ODCanti.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Rr_ODCanti.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Rr_ODCanti.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Rr_ODCanti.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Rr_ODCanti.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Rr_ODCanti.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Rr_ODCanti.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Rr_ODCanti.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Rr_ODCanti.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Rr_ODCanti.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Rr_ODCanti.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Rr_ODCanti.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Rr_ODCanti.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Rr_ODCanti.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Rr_ODCanti.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Rr_ODCanti.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Rr_ODCanti.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Rr_ODCanti.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Rr_ODCanti.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Rr_ODCanti.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Rr_ODCanti.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1-PKa.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1-PKa.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1-PKa.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1-PKa.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1-PKa.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1-PKa.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1-PKa.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1-PKa.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1-PKa.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1-PKa.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1-PKa.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1-PKa.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1-PKa.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1-PKa.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1-PKa.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1-PKa.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1-PKa.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1-PKa.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1-PKa.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1-PKa.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1-PKa.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1-PKa.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1-PKa.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1-PKa.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1-UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1-UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1-UPD-PKb.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1-UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1-UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1-UPD-PKb.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1-UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1-UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1-UPD-PKb.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1-UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1-UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1-UPD-PKb.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1-UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1-UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1-UPD-PKb.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1-UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1-UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1-UPD-PKb.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1-UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1-UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1-UPD-PKb.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1-UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1-UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1-UPD-PKb.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKc.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKc.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKc.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKc.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKc.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKc.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKc.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKc.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKd.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKd.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKd.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKd.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKd.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKd.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKd.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKd.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKd.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKd.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKd.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKd.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKd.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKd.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKd.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKd.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKd.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKd.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKd.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKd.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKd.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKd.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKd.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKd.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKe.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKe.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKe.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKe.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKe.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKe.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKe.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKe.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKe.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKe.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKe.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKe.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKe.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKe.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKe.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKe.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKe.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKe.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKe.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKe.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKe.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKe.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKe.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKe.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKf.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKf.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKf.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKf.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKf.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKf.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKf.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKf.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKf.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKf.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKf.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKf.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKf.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKf.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKf.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKf.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKf.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKf.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKf.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKf.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKf.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKf.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKf.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKf.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKg.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKg.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKg.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKg.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKg.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKg.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKg.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKg.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKg.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKg.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKg.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKg.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKg.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKg.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKg.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKg.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKh.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKh.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKh.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKh.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKh.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKh.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKh.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKh.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKh.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKh.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKh.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKh.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKh.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKh.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKh.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKh.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKh.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKh.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKh.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKh.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKh.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKh.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBRMV1_UPD-PKh.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBRMV1_UPD-PKh.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSIV_IRES.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSIV_IRES.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSIV_IRES.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSIV_IRES.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSIV_IRES.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSIV_IRES.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSIV_IRES.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSIV_IRES.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSIV_IRES.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSIV_IRES.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSIV_IRES.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSIV_IRES.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSIV_IRES.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSIV_IRES.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSIV_IRES.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSIV_IRES.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSIV_IRES.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSIV_IRES.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSIV_IRES.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSIV_IRES.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSIV_IRES.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSIV_IRES.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSIV_IRES.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSIV_IRES.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKb.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKb.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKb.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKb.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKb.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKb.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKb.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKb.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKc.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKc.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKc.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKc.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKc.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKc.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKc.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKc.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKc.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKc.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKc.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKd.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKd.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKd.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKd.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKd.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKd.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKd.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKd.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKd.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKd.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKd.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKd.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKd.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKd.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKd.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKd.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKd.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKd.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKd.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKd.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKd.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKd.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKd.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKd.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKe.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKe.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKe.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKe.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKe.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKe.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKe.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKe.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKe.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKe.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKe.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKe.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKe.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKe.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKe.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKe.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKe.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKe.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKe.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKe.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKe.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKe.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKe.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKe.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKf.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKf.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKf.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKf.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKf.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKf.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKf.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKf.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKf.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKf.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKf.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKf.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKf.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKf.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKf.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKf.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKf.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKf.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKf.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKf.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKf.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKf.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKf.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKf.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKg.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKg.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKg.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKg.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKg.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKg.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKg.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKg.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKg.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKg.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKg.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKg.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKg.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKg.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKg.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKg.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKg.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKh.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKh.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKh.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKh.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKh.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKh.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKh.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKh.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKh.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKh.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKh.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKh.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKh.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKh.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKh.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKh.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKh.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKh.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKh.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKh.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKh.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKh.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV1_UPD-PKh.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV1_UPD-PKh.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKb.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKb.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKb.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKb.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKb.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKb.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKb.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKb.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKi.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKi.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKi.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKi.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKi.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKi.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKi.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKi.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKi.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKi.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKi.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKi.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKi.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKi.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKi.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKi.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKi.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKi.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKi.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKi.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKi.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKi.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKi.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKi.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKk.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKk.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKk.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKk.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKk.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKk.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKk.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKk.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKk.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKk.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKk.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKk.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKk.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKk.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKk.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKk.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKk.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKk.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKk.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKk.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKk.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKk.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKk.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKk.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKl.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKl.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKl.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKl.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKl.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKl.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKl.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKl.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKl.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKl.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKl.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKl.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKl.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKl.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKl.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKl.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKl.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKl.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKl.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKl.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKl.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKl.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBWMV2_UPD-PKl.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBWMV2_UPD-PKl.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Pp_18S-PKE23-9_12.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Pp_18S-PKE23-9_12.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Pp_18S-PKE23-9_12.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Pp_18S-PKE23-9_12.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Pp_18S-PKE23-9_12.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Pp_18S-PKE23-9_12.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Pp_18S-PKE23-9_12.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Pp_18S-PKE23-9_12.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Pp_18S-PKE23-9_12.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Pp_18S-PKE23-9_12.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Pp_18S-PKE23-9_12.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Pp_18S-PKE23-9_12.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Pp_18S-PKE23-9_12.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Pp_18S-PKE23-9_12.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Pp_18S-PKE23-9_12.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Pp_18S-PKE23-9_12.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Pp_18S-PKE23-9_12.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Pp_18S-PKE23-9_12.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Pp_18S-PKE23-9_12.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Pp_18S-PKE23-9_12.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Pp_18S-PKE23-9_12.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Pp_18S-PKE23-9_12.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Pp_18S-PKE23-9_12.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Pp_18S-PKE23-9_12.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_PrP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_PrP.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_PrP.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_PrP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_PrP.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_PrP.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_PrP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_PrP.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_PrP.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_PrP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_PrP.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_PrP.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_PrP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_PrP.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_PrP.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_PrP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_PrP.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_PrP.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_PrP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_PrP.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_PrP.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_PrP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_PrP.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_PrP.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_PrP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_PrP.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_PrP.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_PrP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_PrP.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_PrP.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bt_PrP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bt_PrP.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bt_PrP.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bt_PrP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bt_PrP.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bt_PrP.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bt_PrP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bt_PrP.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bt_PrP.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bt_PrP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bt_PrP.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bt_PrP.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bt_PrP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bt_PrP.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bt_PrP.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bt_PrP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bt_PrP.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bt_PrP.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bt_PrP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bt_PrP.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bt_PrP.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bt_PrP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bt_PrP.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bt_PrP.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bt_PrP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bt_PrP.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bt_PrP.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bt_PrP.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bt_PrP.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bt_PrP.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bp_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bp_PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bp_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bp_PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bp_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bp_PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bp_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bp_PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bp_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bp_PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bp_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bp_PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bp_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bp_PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bp_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bp_PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bp_PK2.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/Bp_PK2.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSIV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSIV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSIV_IRES-PKIII.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSIV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSIV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSIV_IRES-PKIII.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSIV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSIV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSIV_IRES-PKIII.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSIV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSIV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSIV_IRES-PKIII.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSIV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSIV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSIV_IRES-PKIII.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSIV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSIV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSIV_IRES-PKIII.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSIV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSIV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSIV_IRES-PKIII.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PSIV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PSIV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PSIV_IRES-PKIII.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HiPV_IRES-PKI.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HiPV_IRES-PKI.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HiPV_IRES-PKI.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HiPV_IRES-PKI.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HiPV_IRES-PKI.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HiPV_IRES-PKI.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HiPV_IRES-PKI.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HiPV_IRES-PKI.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HiPV_IRES-PKIII.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HiPV_IRES-PKIII.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HiPV_IRES-PKIII.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HiPV_IRES-PKIII.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HiPV_IRES-PKIII.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HiPV_IRES-PKIII.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HiPV_IRES-PKIII.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HiPV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HiPV_IRES-PKIII.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DCV_IRES-PKI.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DCV_IRES-PKI.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DCV_IRES-PKI.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DCV_IRES-PKI.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DCV_IRES-PKI.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DCV_IRES-PKI.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DCV_IRES-PKI.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DCV_IRES-PKI.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PRRSV-16244B.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PRRSV-16244B.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PRRSV-16244B.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PRRSV-16244B.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PRRSV-16244B.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PRRSV-16244B.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PRRSV-16244B.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PRRSV-16244B.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PRRSV-16244B.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PRRSV-16244B.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PRRSV-16244B.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PRRSV-16244B.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PRRSV-16244B.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PRRSV-16244B.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PRRSV-16244B.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PRRSV-16244B.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PRRSV-16244B.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PRRSV-16244B.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PRRSV-16244B.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PRRSV-16244B.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PRRSV-16244B.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PRRSV-16244B.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PRRSV-16244B.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PRRSV-16244B.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DCV_IRES-PKIII.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DCV_IRES-PKIII.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DCV_IRES-PKIII.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DCV_IRES-PKIII.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DCV_IRES-PKIII.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DCV_IRES-PKIII.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DCV_IRES-PKIII.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DCV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DCV_IRES-PKIII.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CrPV_IRES-PKI.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CrPV_IRES-PKI.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CrPV_IRES-PKI.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CrPV_IRES-PKI.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CrPV_IRES-PKI.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CrPV_IRES-PKI.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CrPV_IRES-PKI.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CrPV_IRES-PKI.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CrPV_IRES-PKIII.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CrPV_IRES-PKIII.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CrPV_IRES-PKIII.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CrPV_IRES-PKIII.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CrPV_IRES-PKIII.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CrPV_IRES-PKIII.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CrPV_IRES-PKIII.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CrPV_IRES-PKIII.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CrPV_IRES-PKIII.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/CrPV_IRES-PKIII.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TrV_IRES-PKI.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TrV_IRES-PKI.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TrV_IRES-PKI.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TrV_IRES-PKI.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TrV_IRES-PKI.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TrV_IRES-PKI.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TrV_IRES-PKI.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TrV_IRES-PKI.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TrV_IRES-PKIII.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TrV_IRES-PKIII.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TrV_IRES-PKIII.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TrV_IRES-PKIII.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TrV_IRES-PKIII.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TrV_IRES-PKIII.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TrV_IRES-PKIII.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TrV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TrV_IRES-PKIII.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BQCV_IRES-PKI.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BQCV_IRES-PKI.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BQCV_IRES-PKI.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BQCV_IRES-PKI.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BQCV_IRES-PKI.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BQCV_IRES-PKI.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BQCV_IRES-PKI.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BQCV_IRES-PKI.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BQCV_IRES-PKIII.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BQCV_IRES-PKIII.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BQCV_IRES-PKIII.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BQCV_IRES-PKIII.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BQCV_IRES-PKIII.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BQCV_IRES-PKIII.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BQCV_IRES-PKIII.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BQCV_IRES-PKIII.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKIII.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BQCV_IRES-PKIII.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BQCV_IRES-PKIII.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BQCV_IRES-PKIII.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RhPV_IRES-PKI.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RhPV_IRES-PKI.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RhPV_IRES-PKI.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RhPV_IRES-PKI.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RhPV_IRES-PKI.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RhPV_IRES-PKI.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RhPV_IRES-PKI.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RhPV_IRES-PKI.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKI.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RhPV_IRES-PKI.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKI.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RhPV_IRES-PKI.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RhPV_IRES-PKIII.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RhPV_IRES-PKIII.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RhPV_IRES-PKIII.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RhPV_IRES-PKIII.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RhPV_IRES-PKIII.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RhPV_IRES-PKIII.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RhPV_IRES-PKIII.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RhPV_IRES-PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RhPV_IRES-PKIII.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PRRSV-LV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PRRSV-LV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PRRSV-LV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PRRSV-LV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PRRSV-LV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PRRSV-LV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PRRSV-LV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PRRSV-LV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PRRSV-LV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PRRSV-LV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PRRSV-LV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PRRSV-LV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PRRSV-LV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PRRSV-LV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PRRSV-LV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PRRSV-LV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PRRSV-LV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PRRSV-LV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PRRSV-LV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PRRSV-LV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PRRSV-LV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PRRSV-LV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PRRSV-LV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PRRSV-LV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Vp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Vp_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Vp_PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Vp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Vp_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Vp_PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Vp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Vp_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Vp_PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Vp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Vp_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Vp_PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Vp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Vp_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Vp_PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Vp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Vp_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Vp_PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Vp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Vp_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Vp_PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Vp_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Vp_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Vp_PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GLV_IRES.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GLV_IRES.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GLV_IRES.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GLV_IRES.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GLV_IRES.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GLV_IRES.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GLV_IRES.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GLV_IRES.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GLV_IRES.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GLV_IRES.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GLV_IRES.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GLV_IRES.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GLV_IRES.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GLV_IRES.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GLV_IRES.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GLV_IRES.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GLV_IRES.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GLV_IRES.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GLV_IRES.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GLV_IRES.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GLV_IRES.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GLV_IRES.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GLV_IRES.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GLV_IRES.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GLV_IRES.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/GLV_IRES.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WNV_PK3end.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WNV_PK3end.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WNV_PK3end.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WNV_PK3end.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WNV_PK3end.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WNV_PK3end.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WNV_PK3end.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WNV_PK3end.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WNV_PK3end.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WNV_PK3end.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WNV_PK3end.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WNV_PK3end.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WNV_PK3end.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WNV_PK3end.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WNV_PK3end.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WNV_PK3end.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WNV_PK3end.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WNV_PK3end.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WNV_PK3end.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WNV_PK3end.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WNV_PK3end.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WNV_PK3end.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WNV_PK3end.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WNV_PK3end.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WNV_PK3end.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WNV_PK3end.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WNV_PK3end.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WNV_PK3end.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WNV_PK3end.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WNV_PK3end.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WNV_PK3end.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/WNV_PK3end.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WNV_PK3end.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/WNV_PK3end.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DEN2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DEN2_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DEN2_PK1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DEN2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DEN2_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DEN2_PK1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DEN2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DEN2_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DEN2_PK1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DEN2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DEN2_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DEN2_PK1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DEN2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DEN2_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DEN2_PK1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DEN2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DEN2_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DEN2_PK1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DEN2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DEN2_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DEN2_PK1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DEN2_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/DEN2_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/DEN2_PK1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DEN2_PK1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/DEN2_PK1.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/DEN2_PK1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/DEN2_PK1.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BChV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BChV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BChV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BChV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BChV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BChV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BChV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BChV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BChV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BChV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BChV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BChV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BChV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BChV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BChV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BChV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BChV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BChV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BChV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BChV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BChV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BChV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BChV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BChV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BChV.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/BChV.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BChV.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/BChV.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MMLV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MMLV_PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MMLV_PKb.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MMLV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MMLV_PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MMLV_PKb.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MMLV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MMLV_PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MMLV_PKb.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MMLV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MMLV_PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MMLV_PKb.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MMLV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MMLV_PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MMLV_PKb.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MMLV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MMLV_PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MMLV_PKb.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MMLV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MMLV_PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MMLV_PKb.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MMLV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MMLV_PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MMLV_PKb.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MMLV_PKb.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/MMLV_PKb.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MMLV_PKb.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/MMLV_PKb.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RBV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RBV_PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RBV_PKb.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RBV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RBV_PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RBV_PKb.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RBV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RBV_PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RBV_PKb.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RBV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RBV_PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RBV_PKb.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RBV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RBV_PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RBV_PKb.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RBV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RBV_PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RBV_PKb.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RBV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RBV_PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RBV_PKb.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RBV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/RBV_PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/RBV_PKb.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RBV_PKb.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/RBV_PKb.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/RBV_PKb.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/RBV_PKb.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/HAV.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/HAV.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HPeV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HPeV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HPeV1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HPeV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HPeV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HPeV1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HPeV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HPeV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HPeV1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HPeV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HPeV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HPeV1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HPeV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HPeV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HPeV1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HPeV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HPeV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HPeV1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HPeV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HPeV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HPeV1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HPeV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HPeV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HPeV1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HPeV1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/HPeV1.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HPeV1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/HPeV1.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_PKa.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_PKa.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_PKa.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_PKa.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_PKa.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_PKa.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_PKa.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_PKa.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_PKa.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_PKa.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_PKa.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_PKa.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_PKa.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_PKa.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_PKa.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_PKa.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_PKa.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_PKa.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_PKa.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_PKa.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_PKa.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_PKa.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_PKa.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_PKa.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_PKa.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_PKa.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_PKa.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_PKa.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_PKb.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_PKb.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_PKb.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_PKb.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_PKb.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_PKb.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_PKb.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_PKb.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_PKb.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_PKb.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_PKb.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_PKb.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK1.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK1.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK2.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK2.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK2.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK2.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK3.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK3.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/NeRNV_UPD-PK3.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/NeRNV_UPD-PK3.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WBV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WBV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WBV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WBV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WBV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WBV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WBV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WBV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WBV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WBV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WBV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WBV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WBV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WBV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WBV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WBV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WBV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WBV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WBV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WBV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WBV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WBV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/WBV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/WBV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WBV.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/WBV.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/WBV.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/WBV.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SARS-CoV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SARS-CoV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SARS-CoV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SARS-CoV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SARS-CoV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SARS-CoV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SARS-CoV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SARS-CoV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SARS-CoV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SARS-CoV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SARS-CoV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SARS-CoV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SARS-CoV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SARS-CoV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SARS-CoV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SARS-CoV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SARS-CoV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SARS-CoV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SARS-CoV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SARS-CoV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SARS-CoV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SARS-CoV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SARS-CoV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SARS-CoV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SARS-CoV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SARS-CoV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SARS-CoV.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SARS-CoV.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/SARS-CoV.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SARS-CoV.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/SARS-CoV.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MHV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MHV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MHV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MHV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MHV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MHV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MHV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MHV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MHV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MHV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MHV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MHV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MHV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MHV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MHV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MHV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MHV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MHV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MHV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MHV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MHV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MHV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MHV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MHV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MHV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MHV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MHV.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MHV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MHV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MHV.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MHV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MHV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MHV.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MHV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/MHV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/MHV.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MHV.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/MHV.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/MHV.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/MHV.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BCV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BCV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BCV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BCV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BCV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BCV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BCV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BCV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BCV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BCV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BCV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BCV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BCV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BCV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BCV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BCV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BCV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BCV.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BCV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BCV.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BCV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BCV.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BCV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BCV.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BCV.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BCV.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/BCV.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BCV.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/BCV.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mm_Edr.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mm_Edr.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mm_Edr.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mm_Edr.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mm_Edr.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mm_Edr.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mm_Edr.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mm_Edr.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mm_Edr.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mm_Edr.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mm_Edr.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mm_Edr.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mm_Edr.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mm_Edr.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mm_Edr.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mm_Edr.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mm_Edr.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mm_Edr.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mm_Edr.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mm_Edr.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mm_Edr.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mm_Edr.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mm_Edr.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mm_Edr.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mm_Edr.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/Mm_Edr.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mm_Edr.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/Mm_Edr.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_Ma3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_Ma3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_Ma3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_Ma3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_Ma3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_Ma3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_Ma3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_Ma3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_Ma3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_Ma3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_Ma3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_Ma3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_Ma3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_Ma3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_Ma3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_Ma3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_Ma3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_Ma3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_Ma3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_Ma3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_Ma3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_Ma3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Hs_Ma3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Hs_Ma3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_Ma3.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/Hs_Ma3.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Hs_Ma3.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/Hs_Ma3.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PYVV1.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PYVV1.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV2.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PYVV2.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV2.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PYVV2.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PYVV3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PYVV3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV3.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PYVV3.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PYVV3.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PYVV3.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CuYV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CuYV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CuYV1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CuYV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CuYV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CuYV1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CuYV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CuYV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CuYV1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CuYV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CuYV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CuYV1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CuYV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CuYV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CuYV1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CuYV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CuYV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CuYV1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CuYV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CuYV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CuYV1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CuYV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CuYV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CuYV1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CuYV1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/CuYV1.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CuYV1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/CuYV1.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYSDV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYSDV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYSDV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYSDV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYSDV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYSDV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYSDV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYSDV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV1.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV1.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYSDV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYSDV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYSDV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYSDV2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYSDV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYSDV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYSDV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYSDV2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYSDV2.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV2.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CYSDV2.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV2.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV2.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV2.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CYSDV2.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/CYSDV2.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SPCSV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SPCSV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SPCSV1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SPCSV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SPCSV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SPCSV1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SPCSV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SPCSV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SPCSV1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SPCSV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SPCSV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SPCSV1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SPCSV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SPCSV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SPCSV1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SPCSV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SPCSV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SPCSV1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SPCSV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SPCSV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SPCSV1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SPCSV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SPCSV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SPCSV1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SPCSV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SPCSV1.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SPCSV1.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SPCSV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SPCSV1.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SPCSV1.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SPCSV1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/SPCSV1.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SPCSV1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/SPCSV1.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/LIYV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/LIYV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/LIYV1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/LIYV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/LIYV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/LIYV1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/LIYV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/LIYV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/LIYV1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/LIYV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/LIYV1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/LIYV1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/LIYV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/LIYV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/LIYV1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/LIYV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/LIYV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/LIYV1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/LIYV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/LIYV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/LIYV1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/LIYV1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/LIYV1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/LIYV1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/LIYV1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/LIYV1.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/LIYV1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/LIYV1.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/LChV-1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/LChV-1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/LChV-1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/LChV-1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/LChV-1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/LChV-1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/LChV-1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/LChV-1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/LChV-1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/LChV-1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/LChV-1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/LChV-1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/LChV-1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/LChV-1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/LChV-1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/LChV-1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/LChV-1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/LChV-1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/LChV-1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/LChV-1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/LChV-1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/LChV-1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/LChV-1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/LChV-1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/LChV-1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/LChV-1.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/LChV-1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/LChV-1.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BYV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BYV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BYV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BYV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BYV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BYV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BYV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BYV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BYV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BYV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BYV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BYV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BYV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BYV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BYV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/BYV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/BYV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BYV.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/BYV.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/BYV.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/BYV.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CTV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CTV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CTV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CTV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CTV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CTV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CTV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CTV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CTV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CTV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CTV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CTV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CTV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CTV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CTV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CTV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CTV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CTV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CTV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CTV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CTV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CTV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/CTV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/CTV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CTV.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/CTV.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/CTV.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/CTV.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMWaV-2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMWaV-2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMWaV-2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMWaV-2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMWaV-2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMWaV-2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMWaV-2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMWaV-2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMWaV-2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMWaV-2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMWaV-2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMWaV-2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMWaV-2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMWaV-2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMWaV-2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMWaV-2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMWaV-2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMWaV-2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMWaV-2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMWaV-2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMWaV-2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMWaV-2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PMWaV-2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PMWaV-2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMWaV-2.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PMWaV-2.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PMWaV-2.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PMWaV-2.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GLRaV-3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GLRaV-3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GLRaV-3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GLRaV-3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GLRaV-3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GLRaV-3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GLRaV-3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GLRaV-3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GLRaV-3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GLRaV-3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GLRaV-3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GLRaV-3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GLRaV-3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GLRaV-3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GLRaV-3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GLRaV-3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GLRaV-3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GLRaV-3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GLRaV-3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GLRaV-3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GLRaV-3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GLRaV-3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/GLRaV-3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/GLRaV-3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GLRaV-3.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/GLRaV-3.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/GLRaV-3.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/GLRaV-3.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SCFaV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SCFaV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SCFaV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SCFaV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SCFaV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SCFaV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SCFaV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SCFaV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SCFaV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SCFaV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SCFaV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SCFaV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SCFaV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SCFaV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SCFaV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SCFaV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SCFaV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SCFaV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SCFaV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SCFaV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SCFaV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SCFaV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SCFaV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SCFaV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SCFaV.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/SCFaV.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SCFaV.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/SCFaV.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IAV_PK_NS.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IAV_PK_NS.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IAV_PK_NS.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IAV_PK_NS.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IAV_PK_NS.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IAV_PK_NS.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IAV_PK_NS.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IAV_PK_NS.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IAV_PK_NS.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IAV_PK_NS.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IAV_PK_NS.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IAV_PK_NS.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IAV_PK_NS.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IAV_PK_NS.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IAV_PK_NS.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IAV_PK_NS.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IAV_PK_NS.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IAV_PK_NS.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IAV_PK_NS.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IAV_PK_NS.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IAV_PK_NS.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IAV_PK_NS.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IAV_PK_NS.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IAV_PK_NS.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IAV_PK_NS.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/IAV_PK_NS.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IAV_PK_NS.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/IAV_PK_NS.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IBV_PK_NS.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IBV_PK_NS.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IBV_PK_NS.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IBV_PK_NS.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IBV_PK_NS.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IBV_PK_NS.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IBV_PK_NS.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IBV_PK_NS.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IBV_PK_NS.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IBV_PK_NS.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IBV_PK_NS.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IBV_PK_NS.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IBV_PK_NS.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IBV_PK_NS.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IBV_PK_NS.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IBV_PK_NS.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IBV_PK_NS.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IBV_PK_NS.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IBV_PK_NS.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IBV_PK_NS.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IBV_PK_NS.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IBV_PK_NS.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/IBV_PK_NS.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/IBV_PK_NS.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IBV_PK_NS.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/IBV_PK_NS.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/IBV_PK_NS.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/IBV_PK_NS.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bs_glmS_P3.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bs_glmS_P3.1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bs_glmS_P3.1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bs_glmS_P3.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bs_glmS_P3.1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bs_glmS_P3.1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bs_glmS_P3.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bs_glmS_P3.1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bs_glmS_P3.1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bs_glmS_P3.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bs_glmS_P3.1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bs_glmS_P3.1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bs_glmS_P3.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bs_glmS_P3.1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bs_glmS_P3.1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bs_glmS_P3.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bs_glmS_P3.1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bs_glmS_P3.1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bs_glmS_P3.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bs_glmS_P3.1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bs_glmS_P3.1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bs_glmS_P3.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bs_glmS_P3.1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bs_glmS_P3.1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bs_glmS_P3.1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/Bs_glmS_P3.1.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bs_glmS_P3.1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/Bs_glmS_P3.1.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bs_glmS_P1.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bs_glmS_P1.1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bs_glmS_P1.1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bs_glmS_P1.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bs_glmS_P1.1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bs_glmS_P1.1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bs_glmS_P1.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bs_glmS_P1.1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bs_glmS_P1.1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bs_glmS_P1.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bs_glmS_P1.1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bs_glmS_P1.1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bs_glmS_P1.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bs_glmS_P1.1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bs_glmS_P1.1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bs_glmS_P1.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bs_glmS_P1.1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bs_glmS_P1.1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bs_glmS_P1.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bs_glmS_P1.1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bs_glmS_P1.1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bs_glmS_P1.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bs_glmS_P1.1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bs_glmS_P1.1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bs_glmS_P1.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Bs_glmS_P1.1.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Bs_glmS_P1.1.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bs_glmS_P1.1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/Bs_glmS_P1.1.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Bs_glmS_P1.1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/Bs_glmS_P1.1.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK1.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK1.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK1.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK2.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK2.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK2.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK2.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK3.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK3.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK3.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK3.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK3.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK3.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK3.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK3.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TEV_PK3.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TEV_PK3.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TEV_PK3.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/VMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/VMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/VMV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/VMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/VMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/VMV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/VMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/VMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/VMV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/VMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/VMV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/VMV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/VMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/VMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/VMV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/VMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/VMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/VMV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/VMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/VMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/VMV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/VMV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/VMV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/VMV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ScYLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ScYLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ScYLV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ScYLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ScYLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ScYLV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ScYLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ScYLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ScYLV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ScYLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ScYLV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ScYLV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ScYLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ScYLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ScYLV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ScYLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ScYLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ScYLV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ScYLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ScYLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ScYLV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/ScYLV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/ScYLV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/ScYLV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKI.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKI.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKI.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKI.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKI.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKI.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKI.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKI.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKI.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKI.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKI.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKI.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKI.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKII.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKII.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKII.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKII.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKII.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKII.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKII.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKII.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKIII.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKIII.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKIII.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKIII.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKIII.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKIII.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKIII.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-A_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-A_PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-A_PKIII.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKI.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKI.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKI.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKI.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKI.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKI.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKI.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKI.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKII.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKII.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKII.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKII.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKII.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKII.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKII.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKII.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKIII.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKIII.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKIII.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKIII.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKIII.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKIII.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKIII.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKIII.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKIII.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKIII.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKIII.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIII.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKIII.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKIV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKIV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKIV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKIV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKIV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKIV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKIV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-O1K_PKIV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-O1K_PKIV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKI.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKI.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKI.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKI.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKI.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKI.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKI.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKI.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKI.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKI.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKI.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKII.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKII.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKII.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKII.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKII.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKII.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKII.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKII.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKII.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKII.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKII.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKII.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKII.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKIII.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKIII.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKIII.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIII.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKIII.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKIII.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKIII.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKIII.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIII.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIII.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKIII.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKIV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKIV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKIV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKIV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKIV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKIV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKIV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/FMDV-C_PKIV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/FMDV-C_PKIV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMCV-R_PKB.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMCV-R_PKB.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMCV-R_PKB.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMCV-R_PKB.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMCV-R_PKB.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMCV-R_PKB.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMCV-R_PKB.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMCV-R_PKB.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMCV-R_PKB.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMCV-R_PKB.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMCV-R_PKB.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMCV-R_PKB.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMCV-R_PKB.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMCV-R_PKB.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMCV-R_PKB.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMCV-R_PKB.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMCV-R_PKB.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMCV-R_PKB.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMCV-R_PKB.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMCV-R_PKB.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMCV-R_PKB.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMCV-R_PKB.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMCV-R_PKB.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMCV-R_PKB.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMCV-R_PKC.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMCV-R_PKC.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMCV-R_PKC.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMCV-R_PKC.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMCV-R_PKC.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMCV-R_PKC.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMCV-R_PKC.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMCV-R_PKC.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMCV-R_PKC.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMCV-R_PKC.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMCV-R_PKC.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMCV-R_PKC.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMCV-R_PKC.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMCV-R_PKC.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMCV-R_PKC.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMCV-R_PKC.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMCV-R_PKC.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMCV-R_PKC.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMCV-R_PKC.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMCV-R_PKC.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMCV-R_PKC.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/EMCV-R_PKC.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/EMCV-R_PKC.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/EMCV-R_PKC.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mengo_PKB.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mengo_PKB.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mengo_PKB.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mengo_PKB.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mengo_PKB.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mengo_PKB.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mengo_PKB.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mengo_PKB.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mengo_PKB.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mengo_PKB.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mengo_PKB.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mengo_PKB.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mengo_PKB.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mengo_PKB.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mengo_PKB.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mengo_PKB.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mengo_PKB.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mengo_PKB.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mengo_PKB.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mengo_PKB.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mengo_PKB.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mengo_PKB.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mengo_PKB.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mengo_PKB.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mengo_PKC.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mengo_PKC.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mengo_PKC.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mengo_PKC.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mengo_PKC.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mengo_PKC.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mengo_PKC.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mengo_PKC.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mengo_PKC.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mengo_PKC.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mengo_PKC.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mengo_PKC.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mengo_PKC.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mengo_PKC.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mengo_PKC.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mengo_PKC.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mengo_PKC.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mengo_PKC.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mengo_PKC.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mengo_PKC.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mengo_PKC.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/Mengo_PKC.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/Mengo_PKC.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/Mengo_PKC.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV_PK1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV_PK1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV_PK1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV_PK1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV_PK1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV_PK1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV_PK1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV_PK1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV_PK1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV_PK1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV_PK1.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV_PK1.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV_PK1.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV_PK1.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV_PK1.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV_PK1.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV_PK1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV_PK1.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV_PK1.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV_PK2.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV_PK2.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV_PK2.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV_PK2.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV_PK2.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV_PK2.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV_PK2.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV_PK2.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/HAV_PK2.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/HAV_PK2.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/HAV_PK2.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMEV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMEV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMEV.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMEV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMEV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMEV.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMEV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMEV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMEV.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMEV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMEV.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMEV.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMEV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMEV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMEV.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMEV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMEV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMEV.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMEV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMEV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMEV.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/TMEV.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/TMEV.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/TMEV.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-RT_1.1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-RT_1.1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-RT_1.1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-RT_1.1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-RT_1.1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-RT_1.1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-RT_1.1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-RT_1.1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.3a.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.3a.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-RT_1.3a.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.3a.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.3a.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-RT_1.3a.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.3a.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.3a.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-RT_1.3a.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.3a.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.3a.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-RT_1.3a.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.3a.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.3a.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-RT_1.3a.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.3a.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.3a.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-RT_1.3a.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.3a.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.3a.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-RT_1.3a.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.3a.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-RT_1.3a.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-RT_1.3a.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-NC_psi-50-1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-NC_psi-50-1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-NC_psi-50-1.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-NC_psi-50-1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-NC_psi-50-1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-NC_psi-50-1.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-NC_psi-50-1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-NC_psi-50-1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-NC_psi-50-1.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-NC_psi-50-1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-NC_psi-50-1.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-NC_psi-50-1.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-NC_psi-50-1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-NC_psi-50-1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-NC_psi-50-1.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-NC_psi-50-1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-NC_psi-50-1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-NC_psi-50-1.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-NC_psi-50-1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-NC_psi-50-1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-NC_psi-50-1.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/antiHIV1-NC_psi-50-1.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/antiHIV1-NC_psi-50-1.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/antiHIV1-NC_psi-50-1.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/R2_retroPK.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/R2_retroPK.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/R2_retroPK.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/R2_retroPK.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/R2_retroPK.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/R2_retroPK.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/R2_retroPK.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/R2_retroPK.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/R2_retroPK.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/R2_retroPK.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/R2_retroPK.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/R2_retroPK.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/R2_retroPK.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/R2_retroPK.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/R2_retroPK.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/R2_retroPK.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/R2_retroPK.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/R2_retroPK.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/R2_retroPK.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/R2_retroPK.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/R2_retroPK.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/R2_retroPK.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/R2_retroPK.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/R2_retroPK.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/R2_retroPK.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/R2_retroPK.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/R2_retroPK.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/R2_retroPK.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/R2_retroPK.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/R2_retroPK.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBU.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBU.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBU.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBU.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBU.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBU.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBU.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBU.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBU.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBU.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBU.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBU.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBU.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBU.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBU.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBU.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBU.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBU.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBU.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBU.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBU.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/SBU.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/SBU.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/SBU.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00002.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00002.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00002.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00002.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00002.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00002.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00002.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00002.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00002.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00002.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00002.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00002.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00002.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00002.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00002.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00002.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00004.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00004.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00004.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00004.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00004.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00004.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00004.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00004.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00004.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00004.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00004.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00004.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00004.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00004.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00004.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00004.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00005.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00005.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00005.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00005.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00005.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00005.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00005.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00005.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00005.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00005.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00005.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00005.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00005.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00005.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00005.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00005.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00006.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00006.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00006.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00006.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00006.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00006.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00006.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00006.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00006.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00006.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00006.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00006.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00006.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00006.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00006.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00006.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00007.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00007.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00007.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00007.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00007.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00007.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00007.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00007.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00007.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00007.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00007.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00007.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00007.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00007.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00007.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00007.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00007.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00007.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00007.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00007.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00010.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00010.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00010.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00010.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00010.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00010.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00010.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00010.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00010.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00010.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00010.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00010.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00010.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00010.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00010.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00010.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00012.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00012.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00012.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00012.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00012.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00012.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00012.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00012.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00012.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00012.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00012.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00012.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00012.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00012.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00012.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00012.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00013.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00013.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00013.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00013.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00013.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00013.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00013.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00013.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00013.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00013.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00013.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00013.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00013.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00013.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00013.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00013.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00014.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00014.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00014.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00014.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00014.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00014.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00014.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00014.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00014.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00014.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00014.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00014.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00014.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00014.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00014.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00014.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00014.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00014.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00014.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00014.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00014.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00014.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00014.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00014.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00014.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00014.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00014.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00014.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00016.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00016.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00016.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00016.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00016.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00016.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00016.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00016.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00016.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00016.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00016.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00016.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00016.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00016.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00016.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00016.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00016.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00016.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00016.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00016.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00016.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00016.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00016.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00016.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00016.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00016.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00016.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00016.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00018.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00018.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00018.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00018.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00018.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00018.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00018.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00018.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00018.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00018.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00018.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00018.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00018.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00018.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00018.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00018.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00018.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00018.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00018.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00018.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00018.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00018.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00018.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00018.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00019.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00019.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00019.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00019.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00019.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00019.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00019.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00019.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00019.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00019.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00019.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00019.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00019.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00019.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00019.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00019.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00019.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00019.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00019.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00019.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00019.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00019.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00019.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00019.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00020.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00020.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00020.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00020.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00020.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00020.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00020.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00020.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00020.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00020.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00020.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00020.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00020.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00020.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00020.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00020.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00021.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00021.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00021.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00021.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00021.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00021.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00021.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00021.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00021.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00021.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00021.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00021.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00022.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00022.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00022.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00022.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00022.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00022.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00022.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00022.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00022.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00022.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00022.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00022.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00022.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00022.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00022.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00022.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00024.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00024.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00024.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00024.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00024.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00024.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00024.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00024.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00024.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00024.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00024.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00024.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00024.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00024.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00024.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00024.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00024.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00024.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00024.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00024.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00025.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00025.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00025.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00025.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00025.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00025.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00025.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00025.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00025.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00025.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00025.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00025.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00025.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00025.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00025.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00025.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00025.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00025.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00025.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00025.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00040.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00040.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00040.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00040.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00040.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00040.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00040.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00040.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00040.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00040.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00040.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00040.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00040.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00040.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00040.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00040.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00041.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00041.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00041.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00041.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00041.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00041.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00041.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00041.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00041.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00041.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00041.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00041.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00048.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00048.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00048.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00048.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00048.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00048.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00048.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00048.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00048.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00048.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00048.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00048.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00048.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00048.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00048.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00048.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00051.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00051.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00051.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00051.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00051.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00051.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00051.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00051.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00051.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00051.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00051.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00051.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00051.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00051.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00051.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00051.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00053.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00053.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00053.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00053.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00053.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00053.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00053.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00053.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00053.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00053.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00053.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00053.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00056.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00056.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00056.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00056.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00056.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00056.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00056.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00056.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00056.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00056.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00056.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00056.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00056.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00056.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00056.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00056.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00057.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00057.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00057.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00057.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00057.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00057.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00057.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00057.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00057.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00057.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00057.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00057.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00057.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00057.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00057.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00057.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00059.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00059.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00059.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00059.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00059.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00059.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00059.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00059.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00059.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00059.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00059.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00059.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00059.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00059.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00059.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00059.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00065.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00065.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00065.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00065.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00065.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00065.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00065.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00065.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00065.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00065.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00065.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00065.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00065.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00065.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00065.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00065.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00065.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00065.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00065.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00065.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00065.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00065.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00065.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00065.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00068.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00068.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00068.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00068.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00068.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00068.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00068.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00068.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00068.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00068.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00068.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00068.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00068.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00068.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00068.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00068.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00068.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00068.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00068.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00068.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00068.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00068.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00068.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00068.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00068.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00068.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00068.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00068.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00069.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00069.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00069.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00069.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00069.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00069.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00069.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00069.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00069.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00069.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00069.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00069.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00069.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00069.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00069.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00069.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00069.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00069.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00069.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00069.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00069.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00069.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00069.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00069.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00069.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00069.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00069.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00069.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00073.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00073.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00073.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00073.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00073.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00073.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00073.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00073.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00073.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00073.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00073.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00073.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00073.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00073.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00073.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00073.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00073.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00073.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00073.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00073.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00073.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00073.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00073.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00073.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00083.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00083.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00083.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00083.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00083.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00083.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00083.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00083.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00083.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00083.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00083.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00083.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00083.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00083.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00083.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00083.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00083.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00083.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00083.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00083.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00083.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00083.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00083.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00083.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00083.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00083.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00083.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00083.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00084.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00084.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00084.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00084.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00084.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00084.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00084.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00084.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00084.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00084.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00084.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00084.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00084.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00084.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00084.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00084.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00084.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00084.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00084.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00084.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00085.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00085.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00085.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00085.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00085.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00085.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00085.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00085.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00085.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00085.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00085.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00085.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00085.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00085.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00085.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00085.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00085.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00085.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00085.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00085.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00085.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00085.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00085.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00085.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00085.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00085.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00085.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00085.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00086.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00086.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00086.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00086.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00086.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00086.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00086.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00086.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00086.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00086.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00086.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00086.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00086.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00086.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00086.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00086.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00086.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00086.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00086.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00086.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00087.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00087.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00087.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00087.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00087.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00087.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00087.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00087.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00087.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00087.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00087.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00087.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00087.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00087.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00087.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00087.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00087.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00087.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00087.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00087.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00087.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00087.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00087.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00087.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00087.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00087.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00087.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00087.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00088.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00088.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00088.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00088.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00088.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00088.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00088.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00088.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00088.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00088.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00088.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00088.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00088.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00088.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00088.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00088.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00088.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00088.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00088.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00088.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00088.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00088.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00088.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00088.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00089.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00089.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00089.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00089.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00089.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00089.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00089.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00089.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00089.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00089.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00089.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00089.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00089.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00089.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00089.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00089.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00089.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00089.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00089.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00089.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00089.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00089.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00089.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00089.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00089.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00089.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00089.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00089.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00090.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00090.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00090.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00090.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00090.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00090.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00090.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00090.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00090.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00090.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00090.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00090.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00090.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00090.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00090.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00090.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00090.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00090.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00090.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00090.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00090.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00090.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00090.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00090.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00090.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00090.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00090.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00090.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00091.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00091.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00091.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00091.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00091.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00091.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00091.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00091.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00091.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00091.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00091.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00091.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00091.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00091.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00091.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00091.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00091.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00091.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00091.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00091.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00091.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00091.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00091.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00091.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00091.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00091.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00091.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00091.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00092.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00092.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00092.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00092.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00092.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00092.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00092.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00092.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00092.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00092.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00092.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00092.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00092.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00092.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00092.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00092.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00092.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00092.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00092.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00092.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00092.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00092.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00092.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00092.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00092.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00092.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00092.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00092.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00093.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00093.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00093.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00093.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00093.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00093.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00093.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00093.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00093.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00093.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00093.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00093.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00093.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00093.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00093.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00093.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00093.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00093.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00093.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00093.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00093.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00093.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00093.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00093.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00093.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00093.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00093.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00093.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00095.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00095.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00095.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00095.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00095.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00095.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00095.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00095.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00095.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00095.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00095.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00095.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00095.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00095.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00095.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00095.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00095.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00095.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00095.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00095.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00095.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00095.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00095.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00095.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00097.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00097.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00097.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00097.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00097.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00097.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00097.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00097.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00097.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00097.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00097.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00097.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00097.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00097.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00097.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00097.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00098.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00098.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00098.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00098.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00098.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00098.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00098.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00098.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00098.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00098.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00098.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00098.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00099.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00099.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00099.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00099.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00099.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00099.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00099.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00099.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00099.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00099.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00099.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00099.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00100.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00100.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00100.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00100.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00100.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00100.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00100.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00100.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00100.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00100.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00100.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00100.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00100.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00100.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00100.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00100.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00100.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00100.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00100.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00100.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00100.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00100.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00100.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00100.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00100.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00100.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00100.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00100.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00103.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00103.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00103.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00103.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00103.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00103.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00103.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00103.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00103.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00103.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00103.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00103.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00103.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00103.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00103.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00103.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00103.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00103.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00103.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00103.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00103.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00103.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00103.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00103.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00108.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00108.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00108.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00108.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00108.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00108.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00108.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00108.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00108.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00108.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00108.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00108.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00108.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00108.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00108.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00108.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00109.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00109.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00109.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00109.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00109.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00109.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00109.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00109.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00109.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00109.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00109.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00109.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00109.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00109.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00109.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00109.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00109.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00109.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00109.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00109.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00109.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00109.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00109.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00109.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00110.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00110.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00110.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00110.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00110.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00110.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00110.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00110.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00110.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00110.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00110.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00110.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00114.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00114.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00114.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00114.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00114.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00114.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00114.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00114.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00114.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00114.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00114.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00114.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00114.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00114.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00114.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00114.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00114.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00114.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00114.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00114.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00118.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00118.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00118.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00118.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00118.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00118.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00118.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00118.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00118.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00118.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00118.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00118.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00118.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00118.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00118.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00118.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00118.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00118.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00118.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00118.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00119.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00119.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00119.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00119.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00119.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00119.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00119.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00119.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00119.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00119.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00119.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00119.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00119.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00119.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00119.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00119.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00119.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00119.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00119.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00119.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00119.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00119.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00119.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00119.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00123.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00123.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00123.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00123.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00123.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00123.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00123.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00123.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00123.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00123.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00123.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00123.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00123.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00123.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00123.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00123.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00123.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00123.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00123.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00123.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00123.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00123.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00123.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00123.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00123.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00123.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00123.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00123.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00123.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00123.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00124.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00124.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00124.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00124.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00124.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00124.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00124.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00124.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00124.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00124.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00124.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00124.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00124.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00124.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00124.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00124.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00124.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00124.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00124.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00124.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00124.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00124.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00124.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00124.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00128.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00128.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00128.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00128.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00128.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00128.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00128.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00128.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00128.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00128.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00128.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00128.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00128.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00128.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00128.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00128.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00128.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00128.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00128.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00128.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00128.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00128.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00128.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00128.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00129.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00129.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00129.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00129.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00129.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00129.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00129.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00129.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00129.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00129.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00129.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00129.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00129.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00129.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00129.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00129.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00129.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00129.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00129.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00129.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00129.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00129.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00129.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00129.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00130.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00130.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00130.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00130.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00130.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00130.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00130.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00130.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00130.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00130.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00130.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00130.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00130.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00130.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00130.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00130.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00131.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00131.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00131.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00131.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00131.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00131.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00131.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00131.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00131.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00131.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00131.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00131.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00131.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00131.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00131.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00131.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00131.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00131.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00131.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00131.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00131.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00131.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00131.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00131.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00133.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00133.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00133.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00133.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00133.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00133.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00133.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00133.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00133.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00133.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00133.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00133.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00133.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00133.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00133.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00133.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00134.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00134.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00134.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00134.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00134.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00134.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00134.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00134.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00134.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00134.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00134.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00134.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00134.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00134.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00134.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00134.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00135.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00135.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00135.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00135.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00135.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00135.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00135.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00135.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00135.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00135.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00135.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00135.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00135.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00135.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00135.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00135.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00138.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00138.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00138.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00138.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00138.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00138.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00138.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00138.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00138.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00138.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00138.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00138.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00138.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00138.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00138.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00138.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00139.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00139.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00139.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00139.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00139.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00139.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00139.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00139.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00139.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00139.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00139.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00139.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00139.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00139.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00139.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00139.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00139.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00139.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00139.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00139.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00139.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00139.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00139.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00139.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00141.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00141.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00141.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00141.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00141.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00141.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00141.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00141.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00141.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00141.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00141.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00141.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00141.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00141.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00141.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00141.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00141.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00141.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00141.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00141.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00141.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00141.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00141.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00141.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00147.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00147.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00147.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00147.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00147.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00147.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00147.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00147.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00147.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00147.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00147.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00147.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00147.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00147.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00147.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00147.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00148.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00148.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00148.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00148.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00148.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00148.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00148.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00148.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00148.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00148.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00148.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00148.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00148.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00148.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00148.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00148.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00155.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00155.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00155.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00155.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00155.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00155.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00155.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00155.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00155.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00155.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00155.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00155.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00155.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00155.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00155.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00155.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00155.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00155.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00155.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00155.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00155.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00155.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00155.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00155.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00160.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00160.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00160.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00160.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00160.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00160.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00160.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00160.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00160.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00160.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00160.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00160.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00160.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00160.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00160.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00160.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00160.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00160.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00160.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00160.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00160.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00160.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00160.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00160.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00168.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00168.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00168.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00168.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00168.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00168.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00168.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00168.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00168.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00168.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00168.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00168.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00168.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00168.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00168.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00168.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00171.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00171.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00171.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00171.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00171.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00171.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00171.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00171.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00171.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00171.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00171.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00171.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00171.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00171.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00171.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00171.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00171.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00171.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00171.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00171.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00171.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00171.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00171.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00171.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00172.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00172.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00172.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00172.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00172.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00172.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00172.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00172.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00172.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00172.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00172.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00172.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00172.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00172.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00172.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00172.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00172.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00172.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00172.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00172.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00172.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00172.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00172.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00172.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00173.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00173.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00173.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00173.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00173.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00173.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00173.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00173.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00173.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00173.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00173.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00173.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00173.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00173.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00173.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00173.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00173.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00173.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00173.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00173.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00173.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00173.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00173.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00173.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00177.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00177.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00177.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00177.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00177.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00177.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00177.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00177.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00177.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00177.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00177.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00177.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00177.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00177.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00177.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00177.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00177.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00177.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00177.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00177.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00177.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00177.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00177.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00177.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00180.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00180.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00180.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00180.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00180.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00180.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00180.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00180.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00180.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00180.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00180.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00180.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00180.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00180.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00180.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00180.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00180.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00180.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00180.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00180.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00180.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00180.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00180.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00180.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00184.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00184.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00184.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00184.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00184.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00184.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00184.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00184.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00184.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00184.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00184.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00184.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00184.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00184.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00184.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00184.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00184.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00184.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00184.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00184.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00184.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00184.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00184.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00184.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00185.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00185.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00185.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00185.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00185.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00185.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00185.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00185.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00185.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00185.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00185.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00185.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00185.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00185.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00185.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00185.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00186.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00186.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00186.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00186.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00186.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00186.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00186.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00186.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00186.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00186.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00186.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00186.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00186.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00186.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00186.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00186.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00186.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00186.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00186.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00186.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00186.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00186.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00186.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00186.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00191.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00191.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00191.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00191.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00191.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00191.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00191.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00191.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00191.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00191.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00191.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00191.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00191.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00191.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00191.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00191.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00191.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00191.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00191.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00191.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00191.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00191.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00191.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00191.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00191.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00191.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00191.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00191.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00197.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00197.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00197.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00197.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00197.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00197.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00197.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00197.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00197.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00197.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00197.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00197.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00197.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00197.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00197.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00197.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00197.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00197.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00197.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00197.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00197.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00197.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00197.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00197.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00201.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00201.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00201.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00201.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00201.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00201.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00201.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00201.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00201.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00201.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00201.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00201.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00206.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00206.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00206.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00206.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00206.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00206.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00206.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00206.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00206.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00206.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00206.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00206.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00206.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00206.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00206.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00206.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00209.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00209.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00209.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00209.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00209.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00209.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00209.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00209.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00209.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00209.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00209.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00209.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00209.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00209.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00209.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00209.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00209.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00209.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00209.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00209.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00209.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00209.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00209.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00209.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00216.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00216.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00216.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00216.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00216.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00216.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00216.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00216.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00216.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00216.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00216.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00216.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00216.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00216.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00216.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00216.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00216.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00216.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00216.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00216.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00216.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00216.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00216.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00216.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00217.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00217.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00217.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00217.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00217.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00217.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00217.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00217.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00217.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00217.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00217.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00217.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00217.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00217.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00217.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00217.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00217.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00217.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00217.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00217.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00217.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00217.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00217.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00217.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00218.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00218.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00218.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00218.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00218.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00218.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00218.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00218.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00218.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00218.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00218.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00218.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00218.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00218.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00218.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00218.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00218.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00218.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00218.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00218.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00218.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00218.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00218.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00218.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00219.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00219.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00219.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00219.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00219.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00219.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00219.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00219.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00219.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00219.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00219.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00219.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00219.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00219.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00219.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00219.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00219.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00219.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00219.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00219.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00219.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00219.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00219.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00219.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00224.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00224.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00224.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00224.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00224.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00224.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00224.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00224.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00224.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00224.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00224.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00224.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00224.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00224.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00224.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00224.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00224.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00224.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00224.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00224.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00224.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00224.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00224.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00224.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00225.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00225.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00225.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00225.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00225.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00225.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00225.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00225.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00225.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00225.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00225.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00225.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00225.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00225.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00225.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00225.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00225.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00225.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00225.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00225.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00225.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00225.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00225.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00225.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00225.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00225.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00225.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00225.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00226.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00226.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00226.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00226.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00226.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00226.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00226.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00226.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00226.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00226.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00226.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00226.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00226.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00226.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00226.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00226.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00226.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00226.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00226.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00226.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00226.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00226.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00226.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00226.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00226.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00226.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00226.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00226.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00229.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00229.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00229.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00229.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00229.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00229.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00229.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00229.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00229.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00229.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00229.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00229.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00229.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00229.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00229.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00229.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00229.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00229.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00229.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00229.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00229.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00229.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00229.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00229.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00229.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00229.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00231.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00231.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00231.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00231.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00231.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00231.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00231.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00231.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00231.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00231.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00231.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00231.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00231.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00231.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00231.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00231.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00231.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00231.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00231.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00231.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00231.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00231.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00231.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00231.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00231.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00231.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00231.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00231.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00240.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00240.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00240.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00240.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00240.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00240.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00240.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00240.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00240.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00240.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00240.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00240.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00240.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00240.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00240.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00240.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00240.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00240.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00240.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00240.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00240.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00240.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00240.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00240.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00240.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00240.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00240.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00240.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00241.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00241.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00241.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00241.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00241.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00241.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00241.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00241.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00241.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00241.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00241.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00241.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00241.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00241.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00241.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00241.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00241.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00241.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00241.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00241.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00241.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00241.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00241.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00241.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00241.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00241.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00241.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00241.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00243.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00243.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00243.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00243.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00243.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00243.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00243.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00243.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00243.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00243.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00243.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00243.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00243.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00243.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00243.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00243.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00243.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00243.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00243.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00243.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00243.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00243.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00243.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00243.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00245.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00245.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00245.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00245.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00245.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00245.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00245.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00245.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00245.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00245.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00245.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00245.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00245.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00245.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00245.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00245.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00245.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00245.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00245.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00245.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00245.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00245.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00245.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00245.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00256.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00256.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00256.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00256.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00256.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00256.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00256.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00256.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00256.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00256.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00256.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00256.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00256.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00256.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00256.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00256.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00256.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00256.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00256.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00256.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00256.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00256.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00256.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00256.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00258.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00258.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00258.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00258.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00258.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00258.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00258.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00258.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00258.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00258.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00258.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00258.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00258.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00258.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00258.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00258.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00269.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00269.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00269.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00269.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00269.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00269.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00269.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00269.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00269.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00269.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00269.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00269.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00269.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00269.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00269.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00269.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00269.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00269.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00269.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00269.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00269.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00269.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00269.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00269.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00285.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00285.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00285.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00285.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00285.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00285.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00285.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00285.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00285.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00285.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00285.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00285.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00286.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00286.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00286.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00286.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00286.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00286.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00286.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00286.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00286.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00286.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00286.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00286.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00286.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00286.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00286.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00286.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00286.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00286.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00286.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00286.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00286.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00286.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00286.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00286.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00288.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00288.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00288.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00288.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00288.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00288.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00288.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00288.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00288.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00288.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00288.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00288.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00288.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00288.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00288.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00288.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00288.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00288.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00288.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00288.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00288.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00288.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00288.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00288.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00289.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00289.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00289.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00289.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00289.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00289.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00289.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00289.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00289.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00289.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00289.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00289.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00289.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00289.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00293.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00293.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00293.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00293.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00293.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00293.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00293.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00293.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00293.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00293.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00293.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00293.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00293.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00293.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00293.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00293.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00293.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00293.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00293.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00293.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00293.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00293.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00293.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00293.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00299.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00299.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00299.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00299.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00299.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00299.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00299.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00299.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00299.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00299.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00299.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00299.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00299.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00299.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00299.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00299.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00303.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00303.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00303.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00303.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00303.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00303.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00303.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00303.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00303.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00303.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00303.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00303.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00303.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00303.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00303.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00303.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00303.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00303.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00303.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00303.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00303.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00303.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00303.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00303.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00303.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00303.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00303.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00304.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00304.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00304.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00304.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00304.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00304.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00304.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00304.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00304.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00304.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00304.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00304.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00304.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00304.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00304.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00304.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00304.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00304.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00304.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00304.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00304.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00304.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00304.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00304.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00304.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00304.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00304.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00304.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00304.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00304.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00306.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00306.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00306.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00306.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00306.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00306.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00306.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00306.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00306.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00306.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00306.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00306.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00306.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00306.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00306.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00306.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00306.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00306.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00306.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00306.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00306.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00306.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00306.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00306.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00312.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00312.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00312.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00312.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00312.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00312.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00312.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00312.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00312.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00312.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00312.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00312.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00312.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00312.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00312.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00312.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00312.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00312.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00312.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00312.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00312.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00312.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00312.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00312.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00317.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00317.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00317.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00317.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00317.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00317.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00317.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00317.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00317.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00317.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00317.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00317.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00317.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00317.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00317.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00317.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00317.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00317.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00317.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00317.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00317.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00317.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00317.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00317.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00335.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00335.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00335.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00335.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00335.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00335.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00335.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00335.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00335.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00335.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00335.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00335.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00335.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00335.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00335.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00335.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00335.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00335.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00335.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00335.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00335.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00335.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00335.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00335.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00335.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00335.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00335.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00339.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00339.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00339.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00339.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00339.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00339.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00339.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00339.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00339.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00339.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00339.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00339.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00339.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00339.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00339.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00339.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00339.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00339.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00339.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00339.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00339.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00339.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00339.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00339.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00341.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00341.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00341.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00341.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00341.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00341.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00341.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00341.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00341.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00341.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00341.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00341.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00341.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00341.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00341.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00341.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00341.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00341.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00341.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00341.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00341.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00341.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00341.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00341.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00346.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00346.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00346.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00346.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00346.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00346.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00346.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00346.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00346.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00346.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00346.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00346.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00346.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00346.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00346.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00346.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00346.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00346.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00346.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00346.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00346.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00346.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00346.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00346.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00346.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00346.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00346.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00352.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00352.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00352.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00352.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00352.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00352.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00352.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00352.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00352.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00352.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00352.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00352.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00352.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00352.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00352.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00352.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00352.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00352.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00352.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00352.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00352.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00352.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00352.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00352.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00357.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00357.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00357.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00357.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00357.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00357.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00357.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00357.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00357.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00357.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00357.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00357.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00357.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00357.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00357.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00357.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00357.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00357.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00357.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00357.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00357.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00357.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00357.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00357.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00361.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00361.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00361.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00361.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00361.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00361.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00361.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00361.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00361.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00361.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00361.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00361.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00361.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00361.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00361.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00361.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00361.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00361.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00361.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00361.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00361.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00361.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00361.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00361.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00362.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00362.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00362.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00362.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00362.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00362.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00362.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00362.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00362.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00362.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00362.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00362.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00362.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00362.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00362.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00362.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00362.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00362.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00362.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00362.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00362.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00362.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00362.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00362.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00373.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00373.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00373.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00373.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00373.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00373.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00373.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00373.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00373.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00373.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00373.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00373.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00373.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00373.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00373.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00373.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00373.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00373.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00373.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00373.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00373.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00373.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00373.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00373.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00373.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00373.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00374.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00374.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00374.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00374.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00374.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00374.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00374.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00374.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00374.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00374.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00374.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00374.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00374.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00374.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00374.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00374.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00374.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00374.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00374.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00374.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00374.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00374.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00374.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00374.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00374.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00374.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00374.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00374.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00376.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00376.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00376.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00376.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00376.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00376.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00376.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00376.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00376.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00376.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00376.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00376.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00376.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00376.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00376.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00376.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00376.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00376.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00376.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00376.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00376.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00376.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00376.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00376.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00376.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00376.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00376.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00376.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00377.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00377.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00377.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00377.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00377.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00377.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00377.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00377.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00377.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00377.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00377.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00377.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00377.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00377.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00377.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00377.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00377.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00377.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00377.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00377.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00377.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00377.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00377.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00377.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00377.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00377.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00377.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00377.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00383.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00383.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00383.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00383.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00383.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00383.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00383.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00383.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00383.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00383.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00383.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00383.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00383.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00383.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00383.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00383.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00383.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00383.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00383.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00383.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00383.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00383.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00383.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00383.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00383.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00383.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00383.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00383.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00402.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00402.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00402.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00402.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00402.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00402.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00402.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00402.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00402.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00402.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00402.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00402.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00402.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00402.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00402.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00402.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00402.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00402.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00402.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00402.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00402.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00402.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00407.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00407.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00407.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00407.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00407.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00407.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00407.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00407.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00407.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00407.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00407.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00407.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00407.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00407.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00420.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00420.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00420.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00420.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00420.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00420.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00420.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00420.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00420.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00420.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00420.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00420.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00420.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00420.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00420.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00420.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00420.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00420.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00420.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00420.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00420.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00420.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00420.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00420.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00420.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00420.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00420.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00420.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00425.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00425.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00425.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00425.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00425.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00425.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00425.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00425.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00425.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00425.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00425.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00425.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00425.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00425.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00425.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00425.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00425.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00425.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00425.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00425.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00425.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00425.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00425.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00425.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00425.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00425.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00425.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00425.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00426.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00426.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00426.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00426.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00426.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00426.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00426.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00426.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00426.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00426.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00426.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00426.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00426.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00426.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00426.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00426.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00426.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00426.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00426.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00426.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00426.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00426.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00426.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00426.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00426.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00426.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00426.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00426.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00434.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00434.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00434.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00434.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00434.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00434.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00434.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00434.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00434.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00434.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00434.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00434.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00434.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00434.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00434.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00434.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00434.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00434.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00434.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00434.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00434.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00434.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00434.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00434.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00434.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00434.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00434.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00434.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00474.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00474.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00474.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00474.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00474.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00474.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00474.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00474.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00474.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00474.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00474.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00474.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00474.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00474.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00474.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00474.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00474.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00474.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00474.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00474.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00474.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00474.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00481.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00481.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00481.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00481.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00481.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00481.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00481.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00481.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00481.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00481.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00481.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00481.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00481.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00481.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00481.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00481.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00481.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00481.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00481.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00481.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00481.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00481.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00481.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00481.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00481.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00481.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00481.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00481.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00482.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00482.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00482.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00482.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00482.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00482.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00482.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00482.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00482.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00482.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00482.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00482.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00482.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00482.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00482.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00482.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00482.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00482.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00482.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00482.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00482.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00482.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00482.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00482.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00482.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00482.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00482.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00482.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00483.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00483.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00483.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00483.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00483.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00483.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00483.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00483.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00483.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00483.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00483.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00483.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00483.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00483.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00483.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00483.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00483.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00483.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00483.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00483.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00483.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00483.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00487.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00487.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00487.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00487.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00487.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00487.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00487.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00487.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00487.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00487.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00487.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00487.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00487.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00487.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00487.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00487.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00487.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00487.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00487.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00487.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00487.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00487.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00487.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00487.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00487.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00487.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00487.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00487.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00495.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00495.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00495.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00495.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00495.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00495.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00495.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00495.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00495.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00495.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00495.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00495.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00495.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00495.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00495.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00495.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00495.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00495.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00495.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00495.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00495.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00495.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00495.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00495.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00495.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00495.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00495.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00495.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00497.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00497.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00497.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00497.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00497.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00497.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00497.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00497.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00497.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00497.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00497.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00497.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00497.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00497.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00497.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00497.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00497.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00497.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00497.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00497.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00497.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00497.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00497.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00497.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00497.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00497.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00497.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00497.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00513.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00513.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00513.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00513.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00513.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00513.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00513.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00513.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00513.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00513.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00513.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00513.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00513.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00513.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00513.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00513.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00513.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00513.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00513.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00513.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00513.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00513.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00513.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00513.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00513.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00513.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00513.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00513.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00526.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00526.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00526.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00526.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00526.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00526.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00526.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00526.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00526.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00526.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00526.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00526.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00526.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00526.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00526.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00526.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00526.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00526.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00526.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00526.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00535.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00535.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00535.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00535.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00535.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00535.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00535.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00535.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00535.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00535.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00535.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00535.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00535.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00535.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00535.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00535.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00535.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00535.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00535.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00535.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00535.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00535.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00547.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00547.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00547.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00547.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00547.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00547.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00547.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00547.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00547.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00547.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00547.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00547.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00547.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00547.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00547.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00547.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00547.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00547.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00547.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00547.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00547.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00547.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00547.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00547.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00547.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00547.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00547.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00547.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00553.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00553.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00553.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00553.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00553.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00553.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00553.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00553.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00553.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00553.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00553.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00553.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00553.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00553.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00553.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00553.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00553.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00553.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00553.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00553.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00553.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00553.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00553.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00553.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00553.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00553.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00553.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00553.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00570.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00570.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00570.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00570.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00570.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00570.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00570.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00570.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00570.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00570.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00570.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00570.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00570.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00570.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00570.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00570.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00570.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00570.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00570.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00570.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00570.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00570.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00570.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00570.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00570.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00570.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00570.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00570.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00574.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00574.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00574.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00574.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00574.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00574.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00574.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00574.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00574.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00574.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00574.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00574.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00574.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00574.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00574.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00574.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00574.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00574.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00574.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00574.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00574.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00574.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00574.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00574.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00574.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00574.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00574.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00574.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00588.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00588.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00588.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00588.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00588.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00588.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00588.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00588.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00588.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00588.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00588.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00588.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00588.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00588.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00588.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00588.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00588.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00588.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00588.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00588.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00588.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00588.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00588.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00588.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00588.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00588.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00588.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00588.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00590.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00590.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00590.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00590.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00590.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00590.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00590.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00590.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00590.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00590.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00590.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00590.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00590.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00590.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00590.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00590.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00590.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00590.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00590.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00590.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00590.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00590.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00590.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00590.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00590.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00590.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00590.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00590.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00603.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00603.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00603.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00603.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00603.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00603.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00603.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00603.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00603.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00603.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00603.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00603.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00603.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00603.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00603.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00603.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00603.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00603.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00603.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00603.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00603.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00603.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00603.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00603.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00603.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00603.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00603.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00603.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00617.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00617.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00617.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00617.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00617.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00617.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00617.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00617.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00617.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00617.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00617.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00617.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00617.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00617.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00617.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00617.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00617.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00617.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00617.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00617.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00617.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00617.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00617.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00617.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00617.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00617.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00617.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00617.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00620.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00620.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00620.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00620.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00620.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00620.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00620.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00620.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00620.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00620.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00620.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00620.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00620.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00620.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00620.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00620.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00620.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00620.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00620.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00620.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00620.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00620.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00620.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00620.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00620.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00620.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00620.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00620.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00621.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00621.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00621.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00621.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00621.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00621.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00621.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00621.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00621.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00621.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00621.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00621.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00621.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00621.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00621.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00621.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00621.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00621.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00621.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00621.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00621.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00621.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00621.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00621.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00621.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00621.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00621.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00621.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00627.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00627.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00627.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00627.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00627.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00627.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00627.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00627.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00627.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00627.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00627.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00627.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00627.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00627.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00627.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00627.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00627.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00627.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00627.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00627.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00627.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00627.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00627.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00627.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00627.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00627.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00627.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00627.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00637.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00637.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00637.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00637.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00637.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00637.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00637.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00637.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00637.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00637.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00637.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00637.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00637.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00637.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00637.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00637.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00637.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00637.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00637.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00637.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00637.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00637.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00648.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00648.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00648.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00648.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00648.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00648.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00648.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00648.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00648.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00648.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00648.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00648.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00648.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00648.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00648.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00648.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00648.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00648.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00648.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00648.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00648.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00648.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00648.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00648.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00648.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00648.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00648.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00648.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00649.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00649.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00649.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00649.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00649.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00649.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00649.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00649.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00649.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00649.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00649.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00649.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00649.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00649.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00649.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00649.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00649.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00649.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00649.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00649.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00649.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00649.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00649.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00649.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00649.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00649.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00649.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00649.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00664.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00664.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00664.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00664.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00664.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00664.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00664.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00664.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00664.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00664.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00664.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00664.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00664.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00664.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00664.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00664.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00664.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00664.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00664.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00664.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00664.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00664.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00664.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00664.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00664.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00664.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00664.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00664.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00668.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00668.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00668.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00668.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00668.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00668.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00668.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00668.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00668.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00668.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00668.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00668.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00668.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00668.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00668.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00668.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00668.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00668.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00668.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00668.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00668.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00668.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00668.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00668.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00668.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00668.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00668.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00668.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00669.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00669.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00669.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00669.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00669.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00669.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00669.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00669.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00669.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00669.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00669.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00669.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00669.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00669.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00669.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00669.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00669.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00669.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00669.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00669.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00669.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00669.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00669.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00669.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00669.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00669.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00669.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00669.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00670.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00670.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00670.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00670.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00670.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00670.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00670.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00670.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00670.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00670.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00670.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00670.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00670.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00670.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00670.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00670.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00670.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00670.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00670.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00670.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00670.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00670.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00670.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00670.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00670.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00670.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00670.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00670.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00671.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00671.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00671.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00671.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00671.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00671.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00671.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00671.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00671.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00671.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00671.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00671.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00671.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00671.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00671.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00671.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00671.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00671.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00671.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00671.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00671.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00671.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00671.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00671.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00671.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00671.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00671.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00671.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00672.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00672.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00672.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00672.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00672.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00672.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00672.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00672.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00672.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00672.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00672.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00672.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00672.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00672.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00672.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00672.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00672.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00672.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00672.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00672.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00672.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00672.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00672.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00672.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00672.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00672.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00672.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00672.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00673.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00673.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00673.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00673.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00673.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00673.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00673.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00673.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00673.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00673.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00673.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00673.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00673.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00673.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00673.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00673.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00673.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00673.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00673.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00673.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00673.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00673.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00674.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00674.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00674.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00674.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00674.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00674.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00674.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00674.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00674.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00674.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00674.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00674.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00674.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00674.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00674.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00674.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00674.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00674.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00674.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00674.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00674.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00674.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00691.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00691.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00691.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00691.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00691.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00691.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00691.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00691.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00691.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00691.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00691.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00691.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00691.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00691.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00691.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00691.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00691.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00691.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00691.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00691.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00691.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00691.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00691.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00691.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00691.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00691.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00691.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00691.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00702.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00702.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00702.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00702.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00702.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00702.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00702.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00702.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00702.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00702.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00702.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00702.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00702.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00702.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00702.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00702.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00702.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00702.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00702.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00702.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00702.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00702.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00705.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00705.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00705.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00705.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00705.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00705.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00705.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00705.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00705.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00705.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00705.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00705.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00705.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00705.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00705.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00705.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00705.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00705.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00705.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00705.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00705.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00705.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00705.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00705.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00705.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00705.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00705.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00705.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00706.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00706.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00706.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00706.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00706.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00706.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00706.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00706.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00706.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00706.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00706.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00706.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00706.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00706.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00706.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00706.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00706.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00706.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00706.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00706.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00706.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00706.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00706.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00706.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00706.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00706.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00706.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00706.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00714.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00714.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00714.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00714.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00714.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00714.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00714.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00714.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00714.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00714.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00714.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00714.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00714.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00714.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00714.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00714.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00714.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00714.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00714.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00714.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00714.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00714.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00715.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00715.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00715.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00715.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00715.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00715.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00715.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00715.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00715.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00715.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00715.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00715.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00715.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00715.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00715.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00715.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00715.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00715.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00715.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00715.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00715.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00715.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00716.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00716.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00716.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00716.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00716.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00716.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00716.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00716.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00716.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00716.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00716.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00716.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00716.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00716.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00716.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00716.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00716.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00716.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00716.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00716.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00716.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00716.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00721.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00721.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00721.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00721.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00721.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00721.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00721.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00721.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00721.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00721.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00721.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00721.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00721.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00721.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00721.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00721.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00721.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00721.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00721.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00721.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00721.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00721.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00721.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00721.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00721.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00721.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00721.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00721.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00727.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00727.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00727.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00727.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00727.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00727.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00727.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00727.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00727.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00727.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00727.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00727.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00727.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00727.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00730.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00730.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00730.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00730.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00730.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00730.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00730.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00730.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00730.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00730.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00730.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00730.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00730.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00730.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00730.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00730.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00730.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00730.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00730.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00730.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00730.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00730.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00730.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00730.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00730.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00730.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00730.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00730.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00737.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00737.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00737.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00737.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00737.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00737.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00737.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00737.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00737.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00737.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00737.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00737.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00737.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00737.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00737.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00737.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00737.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00737.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00737.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00737.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00737.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00737.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00737.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00737.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00737.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00737.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00737.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00737.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00742.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00742.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00742.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00742.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00742.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00742.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00742.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00742.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00742.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00742.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00742.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00742.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00742.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00742.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00742.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00742.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00742.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00742.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00742.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00742.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00742.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00742.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00742.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00742.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00742.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00742.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00742.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00742.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00743.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00743.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00743.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00743.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00743.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00743.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00743.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00743.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00743.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00743.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00743.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00743.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00743.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00743.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00743.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00743.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00743.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00743.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00743.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00743.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00743.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00743.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00746.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00746.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00746.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00746.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00746.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00746.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00746.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00746.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00746.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00746.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00746.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00746.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00746.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00746.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00746.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00746.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00746.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00746.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00746.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00746.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00746.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00746.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00749.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00749.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00749.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00749.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00749.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00749.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00749.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00749.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00749.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00749.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00749.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00749.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00749.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00749.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00749.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00749.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00749.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00749.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00749.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00749.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00749.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00749.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00749.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00749.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00749.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00749.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00749.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00749.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00753.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00753.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00753.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00753.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00753.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00753.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00753.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00753.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00753.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00753.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00753.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00753.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00753.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00753.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00753.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00753.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00753.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00753.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00753.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00753.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00753.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00753.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00753.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00753.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00753.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00753.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00753.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00753.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00754.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00754.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00754.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00754.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00754.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00754.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00754.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00754.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00754.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00754.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00754.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00754.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00754.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00754.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00754.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00754.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00754.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00754.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00754.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00754.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00754.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00754.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00754.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00754.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00754.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00754.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00754.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00754.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00755.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00755.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00755.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00755.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00755.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00755.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00755.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00755.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00755.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00755.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00755.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00755.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00755.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00755.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00755.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00755.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00755.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00755.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00755.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00755.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00755.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00755.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00755.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00755.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00755.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00755.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00755.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00755.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00756.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00756.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00756.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00756.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00756.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00756.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00756.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00756.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00756.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00756.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00756.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00756.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00756.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00756.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00756.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00756.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00756.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00756.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00756.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00756.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00756.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00756.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00756.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00756.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00756.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00756.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00756.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00756.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00757.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00757.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00757.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00757.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00757.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00757.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00757.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00757.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00757.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00757.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00757.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00757.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00757.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00757.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00757.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00757.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00757.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00757.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00757.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00757.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00757.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00757.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00757.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00757.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00757.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00757.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00757.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00757.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00759.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00759.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00759.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00759.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00759.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00759.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00759.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00759.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00759.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00759.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00759.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00759.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00759.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00759.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00759.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00759.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00759.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00759.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00759.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00759.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00759.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00759.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00759.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00759.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00759.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00759.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00759.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00759.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00760.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00760.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00760.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00760.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00760.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00760.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00760.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00760.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00760.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00760.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00760.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00760.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00760.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00760.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00760.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00760.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00760.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00760.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00760.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00760.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00760.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00760.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00761.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00761.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00761.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00761.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00761.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00761.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00761.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00761.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00761.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00761.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00761.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00761.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00761.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00761.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00761.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00761.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00761.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00761.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00761.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00761.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00761.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00761.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00762.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00762.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00762.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00762.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00762.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00762.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00762.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00762.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00762.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00762.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00762.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00762.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00762.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00762.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00762.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00762.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00762.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00762.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00762.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00762.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00762.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00762.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00763.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00763.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00763.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00763.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00763.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00763.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00763.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00763.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00763.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00763.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00763.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00763.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00763.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00763.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00763.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00763.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00763.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00763.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00763.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00763.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00763.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00763.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00764.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00764.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00764.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00764.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00764.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00764.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00764.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00764.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00764.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00764.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00764.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00764.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00764.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00764.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00764.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00764.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00764.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00764.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00764.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00764.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00764.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00764.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00764.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00764.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00764.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00764.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00764.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00764.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00765.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00765.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00765.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00765.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00765.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00765.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00765.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00765.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00765.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00765.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00765.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00765.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00765.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00765.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00765.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00765.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00765.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00765.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00765.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00765.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00765.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00765.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00766.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00766.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00766.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00766.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00766.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00766.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00766.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00766.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00766.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00766.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00766.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00766.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00766.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00766.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00766.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00766.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00766.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00766.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00766.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00766.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00766.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00766.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00767.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00767.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00767.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00767.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00767.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00767.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00767.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00767.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00767.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00767.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00767.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00767.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00767.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00767.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00767.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00767.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00767.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00767.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00767.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00767.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00767.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00767.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00767.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00767.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00767.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00767.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00767.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00767.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00798.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00798.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00798.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00798.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00798.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00798.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00798.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00798.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00798.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00798.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00798.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00798.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00798.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00798.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00798.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00798.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00798.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00798.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00798.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00798.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00798.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00798.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00798.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00798.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00798.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00798.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00798.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00798.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00809.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00809.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00809.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00809.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00809.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00809.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00809.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00809.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00809.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00809.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00809.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00809.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00809.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00809.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00809.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00809.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00809.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00809.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00809.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00809.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00809.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00809.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00809.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00809.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00809.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00809.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00809.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00809.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00810.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00810.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00810.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00810.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00810.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00810.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00810.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00810.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00810.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00810.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00810.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00810.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00810.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00810.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00810.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00810.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00810.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00810.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00810.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00810.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00810.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00810.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00810.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00810.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00810.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00810.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00810.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00810.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00816.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00816.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00816.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00816.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00816.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00816.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00816.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00816.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00816.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00816.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00816.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00816.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00816.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00816.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00816.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00816.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00816.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00816.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00816.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00816.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00816.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00816.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00816.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00816.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00816.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00816.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00816.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00816.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00817.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00817.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00817.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00817.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00817.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00817.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00817.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00817.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00817.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00817.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00817.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00817.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00817.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00817.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00817.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00817.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00817.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00817.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00817.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00817.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00817.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00817.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00817.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00817.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00817.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00817.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00817.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00817.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00818.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00818.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00818.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00818.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00818.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00818.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00818.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00818.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00818.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00818.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00818.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00818.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00818.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00818.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00818.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00818.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00818.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00818.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00818.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00818.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00818.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00818.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00818.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00818.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00818.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00818.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00818.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00818.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00825.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00825.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00825.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00825.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00825.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00825.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00825.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00825.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00825.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00825.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00825.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00825.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00825.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00825.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00825.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00825.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00825.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00825.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00825.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00825.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00825.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00825.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00825.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00825.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00825.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00825.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00825.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00825.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00828.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00828.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00828.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00828.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00828.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00828.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00828.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00828.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00828.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00828.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00828.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00828.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00828.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00828.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00828.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00828.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00828.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00828.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00828.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00828.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00828.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00828.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00828.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00828.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00828.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00828.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00828.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00828.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00829.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00829.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00829.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00829.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00829.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00829.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00829.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00829.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00829.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00829.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00829.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00829.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00829.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00829.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00829.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00829.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00829.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00829.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00829.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00829.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00829.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00829.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00829.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00829.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00829.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00829.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00829.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00829.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00831.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00831.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00831.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00831.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00831.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00831.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00831.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00831.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00831.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00831.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00831.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00831.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00831.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00831.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00831.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00831.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00831.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00831.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00831.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00831.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00831.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00831.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00831.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00831.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00831.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00831.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00831.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00831.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00832.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00832.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00832.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00832.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00832.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00832.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00832.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00832.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00832.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00832.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00832.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00832.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00832.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00832.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00832.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00832.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00832.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00832.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00832.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00832.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00832.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00832.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00832.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00832.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00832.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00832.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00832.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00832.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00842.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00842.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00842.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00842.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00842.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00842.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00842.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00842.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00842.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00842.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00842.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00842.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00842.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00842.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00842.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00842.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00842.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00842.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00842.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00842.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00842.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00842.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00842.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00842.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00842.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00842.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00842.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00842.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00843.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00843.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00843.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00843.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00843.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00843.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00843.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00843.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00843.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00843.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00843.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00843.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00843.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00843.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00843.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00843.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00843.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00843.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00843.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00843.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00843.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00843.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00843.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00843.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00843.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00843.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00843.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00843.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00855.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00855.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00855.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00855.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00855.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00855.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00855.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00855.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00855.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00855.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00855.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00855.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00855.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00855.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00855.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00855.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00855.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00855.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00855.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00855.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00855.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00855.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00857.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00857.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00857.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00857.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00857.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00857.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00857.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00857.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00857.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00857.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00857.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00857.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00857.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00857.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00857.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00857.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00857.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00857.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00857.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00857.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00857.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00857.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00857.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00857.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00857.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00857.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00857.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00857.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00858.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00858.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00858.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00858.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00858.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00858.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00858.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00858.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00858.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00858.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00858.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00858.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00858.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00858.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00858.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00858.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00858.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00858.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00858.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00858.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00858.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00858.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00858.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00858.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00858.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00858.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00858.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00858.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00859.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00859.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00859.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00859.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00859.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00859.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00859.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00859.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00859.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00859.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00859.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00859.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00859.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00859.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00859.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00859.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00859.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00859.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00859.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00859.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00859.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00859.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00859.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00859.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00859.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00859.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00859.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00859.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00860.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00860.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00860.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00860.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00860.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00860.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00860.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00860.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00860.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00860.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00860.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00860.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00860.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00860.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00860.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00860.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00860.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00860.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00860.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00860.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00860.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00860.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00861.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00861.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00861.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00861.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00861.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00861.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00861.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00861.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00861.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00861.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00861.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00861.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00861.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00861.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00861.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00861.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00861.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00861.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00861.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00861.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00861.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00861.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00861.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00861.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00861.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00861.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00861.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00861.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00862.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00862.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00862.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00862.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00862.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00862.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00862.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00862.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00862.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00862.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00862.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00862.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00862.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00862.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00862.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00862.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00862.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00862.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00862.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00862.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00862.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00862.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00862.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00862.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00862.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00862.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00862.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00862.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00865.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00865.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00865.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00865.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00865.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00865.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00865.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00865.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00865.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00865.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00865.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00865.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00865.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00865.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00865.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00865.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00865.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00865.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00865.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00865.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00865.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00865.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00865.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00865.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00865.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00865.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00865.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00865.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00867.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00867.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00867.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00867.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00867.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00867.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00867.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00867.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00867.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00867.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00867.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00867.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00867.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00867.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00867.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00867.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00867.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00867.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00867.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00867.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00867.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00867.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00867.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00867.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00867.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00867.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00867.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00867.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00868.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00868.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00868.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00868.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00868.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00868.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00868.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00868.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00868.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00868.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00868.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00868.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00868.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00868.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00868.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00868.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00868.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00868.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00868.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00868.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00868.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00868.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00868.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00868.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00868.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00868.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00868.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00868.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00869.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00869.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00869.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00869.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00869.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00869.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00869.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00869.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00869.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00869.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00869.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00869.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00869.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00869.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00869.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00869.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00869.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00869.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00869.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00869.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00869.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00869.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00869.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00869.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00883.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00883.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00883.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00883.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00883.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00883.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00883.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00883.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00883.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00883.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00883.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00883.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00883.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00883.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00883.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00883.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00883.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00883.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00883.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00883.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00883.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00883.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00883.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00883.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00884.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00884.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00884.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00884.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00884.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00884.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00884.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00884.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00884.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00884.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00884.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00884.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00884.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00884.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00884.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00884.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00884.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00884.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00884.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00884.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00884.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00884.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00884.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00884.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00886.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00886.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00886.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00886.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00886.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00886.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00886.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00886.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00886.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00886.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00886.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00886.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00886.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00886.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00886.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00886.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00886.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00886.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00886.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00886.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00886.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00887.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00887.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00887.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00887.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00887.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00887.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00887.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00887.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00887.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00887.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00887.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00887.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00887.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00887.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00887.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00887.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00887.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00887.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00887.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00887.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00887.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00887.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00887.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00887.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00888.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00888.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00888.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00888.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00888.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00888.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00888.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00888.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00888.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00888.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00888.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00888.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00888.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00888.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00888.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00888.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00888.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00888.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00888.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00888.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00889.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00889.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00889.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00889.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00889.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00889.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00889.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00889.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00889.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00889.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00889.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00889.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00889.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00889.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00889.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00889.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00889.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00889.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00889.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00889.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00889.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00889.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00889.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00889.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00890.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00890.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00890.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00890.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00890.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00890.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00890.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00890.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00890.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00890.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00890.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00890.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00890.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00890.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00890.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00890.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00890.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00890.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00890.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00890.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00890.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00890.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00890.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00890.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00891.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00891.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00891.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00891.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00891.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00891.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00891.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00891.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00891.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00891.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00891.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00891.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00891.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00891.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00891.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00891.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00891.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00891.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00891.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00891.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00896.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00896.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00896.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00896.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00896.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00896.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00896.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00896.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00896.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00896.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00896.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00896.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00896.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00896.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00896.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00896.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00896.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00896.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00896.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00896.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00896.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00896.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00896.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00896.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00896.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00896.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00896.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00896.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00901.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00901.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00901.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00901.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00901.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00901.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00901.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00901.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00901.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00901.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00901.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00901.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00901.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00901.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00901.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00901.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00901.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00901.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00901.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00901.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00901.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00901.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00901.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00901.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00902.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00902.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00902.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00902.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00902.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00902.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00902.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00902.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00902.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00902.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00902.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00902.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00902.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00902.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00902.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00902.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00902.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00902.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00902.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00902.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00902.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00902.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00902.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00902.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00903.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00903.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00903.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00903.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00903.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00903.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00903.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00903.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00903.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00903.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00903.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00903.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00903.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00903.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00903.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00903.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00903.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00903.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00903.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00903.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00903.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00903.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00903.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00903.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00905.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00905.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00905.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00905.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00905.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00905.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00905.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00905.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00905.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00905.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00905.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00905.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00905.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00905.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00905.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00905.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00905.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00905.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00905.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00905.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00905.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00905.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00905.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00905.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00905.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00905.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00905.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00905.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00918.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00918.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00918.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00918.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00918.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00918.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00918.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00918.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00918.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00918.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00918.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00918.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00918.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00918.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00918.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00918.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00918.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00918.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00918.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00918.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00918.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00918.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00918.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00918.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00921.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00921.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00921.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00921.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00921.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00921.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00921.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00921.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00921.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00921.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00921.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00921.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00921.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00921.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00921.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00921.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00921.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00921.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00921.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00921.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00921.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00921.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00921.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00921.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00923.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00923.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00923.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00923.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00923.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00923.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00923.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00923.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00923.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00923.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00923.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00923.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00923.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00923.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00923.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00923.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00923.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00923.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00923.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00923.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00923.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00923.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00923.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00923.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00926.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00926.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00926.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00926.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00926.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00926.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00926.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00926.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00926.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00926.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00926.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00926.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00926.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00926.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00926.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00926.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00926.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00926.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00926.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00926.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00926.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00926.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00926.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00926.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00927.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00927.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00927.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00927.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00927.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00927.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00927.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00927.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00927.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00927.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00927.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00927.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00927.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00927.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00927.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00927.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00927.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00927.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00927.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00927.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00927.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00927.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00927.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00927.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00928.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00928.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00928.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00928.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00928.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00928.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00928.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00928.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00928.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00928.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00928.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00928.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00928.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00928.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00928.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00928.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00928.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00928.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00928.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00928.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00928.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00928.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00928.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00928.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00930.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00930.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00930.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00930.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00930.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00930.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00930.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00930.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00930.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00930.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00930.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00930.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00930.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00930.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00930.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00930.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00930.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00930.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00930.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00930.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00930.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00930.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00930.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00930.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00931.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00931.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00931.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00931.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00931.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00931.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00931.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00931.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00931.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00931.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00931.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00931.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00931.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00931.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00931.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00931.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00931.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00931.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00931.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00931.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00931.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00931.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00931.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00931.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00940.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00940.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00940.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00940.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00940.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00940.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00940.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00940.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00940.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00940.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00940.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00940.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00940.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00940.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00940.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00940.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00940.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00940.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00940.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00940.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00940.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00940.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00940.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00940.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00940.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00940.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00940.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00940.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00941.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00941.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00941.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00941.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00941.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00941.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00941.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00941.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00941.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00941.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00941.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00941.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00941.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00941.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00941.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00941.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00941.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00941.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00941.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00941.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00941.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00941.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00941.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00941.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00942.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00942.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00942.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00942.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00942.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00942.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00942.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00942.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00942.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00942.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00942.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00942.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00942.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00942.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00942.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00942.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00942.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00942.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00942.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00942.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00942.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00942.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00942.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00942.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00942.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00942.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00942.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00943.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00943.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00943.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00943.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00943.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00943.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00943.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00943.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00943.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00943.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00943.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00943.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00943.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00943.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00943.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00943.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00943.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00943.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00943.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00943.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00943.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00943.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00943.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00943.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00943.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00943.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00943.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00943.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00943.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00943.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00944.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00944.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00944.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00944.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00944.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00944.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00944.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00944.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00944.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00944.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00944.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00944.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00944.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00944.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00944.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00944.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00944.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00944.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00944.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00944.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00944.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00944.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00944.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00944.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00945.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00945.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00945.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00945.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00945.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00945.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00945.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00945.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00945.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00945.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00945.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00945.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00945.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00945.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00945.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00945.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00945.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00945.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00945.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00945.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00945.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00945.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00945.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00945.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00948.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00948.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00948.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00948.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00948.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00948.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00948.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00948.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00948.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00948.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00948.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00948.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00948.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00948.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00948.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00948.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00948.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00948.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00948.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00948.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00948.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00948.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00948.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00948.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00949.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00949.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00949.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00949.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00949.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00949.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00949.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00949.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00949.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00949.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00949.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00949.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00949.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00949.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00949.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00949.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00949.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00949.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00949.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00949.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00949.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00949.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00949.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00949.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00950.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00950.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00950.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00950.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00950.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00950.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00950.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00950.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00950.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00950.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00950.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00950.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00950.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00950.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00950.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00950.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00950.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00950.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00950.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00950.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00950.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00950.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00950.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00950.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00951.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00951.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00951.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00951.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00951.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00951.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00951.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00951.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00951.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00951.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00951.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00951.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00951.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00951.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00951.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00951.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00951.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00951.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00951.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00951.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00951.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00951.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00951.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00951.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00961.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00961.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00961.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00961.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00961.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00961.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00961.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00961.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00961.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00961.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00961.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00961.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00961.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00961.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00961.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00961.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00961.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00961.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00961.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00961.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00961.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00961.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00961.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00961.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00963.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00963.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00963.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00963.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00963.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00963.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00963.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00963.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00963.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00963.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00963.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00963.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00963.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00963.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00963.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00963.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00963.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00963.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00963.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00963.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00963.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00963.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00963.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00963.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00963.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00963.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00963.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00963.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00963.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00963.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00964.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00964.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00964.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00964.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00964.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00964.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00964.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00964.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00964.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00964.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00964.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00964.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00964.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00964.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00964.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00964.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00964.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00964.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00964.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00964.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00964.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00964.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00964.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00964.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00965.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00965.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00965.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00965.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00965.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00965.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00965.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00965.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00965.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00965.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00965.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00965.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00965.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00965.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00965.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00965.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00965.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00965.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00965.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00965.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00965.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00965.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00965.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00965.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00966.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00966.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00966.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00966.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00966.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00966.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00966.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00966.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00966.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00966.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00966.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00966.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00966.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00966.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00966.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00966.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00966.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00966.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00966.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00966.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00966.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00966.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00966.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00966.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00968.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00968.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00968.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00968.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00968.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00968.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00968.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00968.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00968.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00968.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00968.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00968.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00968.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00968.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00968.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00968.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00968.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00968.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00968.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00968.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00968.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00968.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00968.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00968.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00970.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00970.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00970.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00970.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00970.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00970.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00970.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00970.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00970.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00970.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00970.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00970.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00970.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00970.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00970.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00970.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00970.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00970.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00970.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00970.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00970.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00970.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00970.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00970.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00971.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00971.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00971.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00971.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00971.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00971.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00971.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00971.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00971.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00971.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00971.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00971.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00971.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00971.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00971.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00971.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00971.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00971.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00971.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00971.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00971.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00971.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00971.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00971.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00971.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00971.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00971.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00971.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00971.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00971.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00972.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00972.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00972.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00972.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00972.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00972.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00972.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00972.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00972.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00972.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00972.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00972.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00972.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00972.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00972.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00972.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00972.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00972.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00972.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00972.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00972.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00972.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00972.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00972.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00972.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00972.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00972.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00972.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00972.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00972.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00973.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00973.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00973.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00973.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00973.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00973.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00973.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00973.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00973.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00973.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00973.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00973.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00973.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00973.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00973.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00973.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00973.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00973.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00973.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00973.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00973.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00973.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00973.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00973.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00973.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00973.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00973.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00973.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00973.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00973.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00974.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00974.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00974.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00974.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00974.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00974.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00974.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00974.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00974.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00974.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00974.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00974.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00974.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00974.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00974.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00974.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00974.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00974.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00974.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00974.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00974.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00974.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00974.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00974.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00975.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00975.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00975.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00975.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00975.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00975.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00975.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00975.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00975.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00975.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00975.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00975.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00975.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00975.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00975.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00975.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00975.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00975.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00975.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00975.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00975.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00975.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00975.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00975.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00977.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00977.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00977.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00977.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00977.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00977.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00977.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00977.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00977.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00977.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00977.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00977.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00977.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00977.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00977.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00977.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00977.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00977.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00977.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00977.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00977.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00977.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00977.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00977.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00988.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00988.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00988.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00988.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00988.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00988.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00988.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00988.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00988.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00988.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00988.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00988.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00988.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00988.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00988.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00988.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00988.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00988.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00988.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00988.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00988.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00988.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00988.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00988.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00990.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00990.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00990.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00990.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00990.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00990.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00990.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00990.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00990.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00990.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00990.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00990.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00990.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00990.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00990.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00990.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00990.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00990.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00990.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00990.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00990.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00990.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00990.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00990.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00990.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00990.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00990.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00990.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00990.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00990.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00990.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00990.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00999.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00999.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00999.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00999.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00999.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00999.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00999.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00999.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00999.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00999.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00999.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00999.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00999.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00999.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00999.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00999.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00999.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00999.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00999.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00999.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00999.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00999.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00999.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_00999.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01002.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01002.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01002.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01002.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01002.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01002.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01002.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01002.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01002.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01002.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01002.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01002.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01002.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01002.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01002.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01002.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01003.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01003.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01003.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01003.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01003.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01003.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01003.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01003.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01003.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01003.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01003.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01003.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01003.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01003.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01003.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01003.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01003.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01003.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01003.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01003.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01003.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01003.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01003.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01003.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01004.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01004.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01004.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01004.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01004.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01004.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01004.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01004.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01004.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01004.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01004.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01004.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01004.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01004.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01004.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01004.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01005.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01005.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01005.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01005.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01005.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01005.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01005.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01005.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01005.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01005.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01005.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01005.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01005.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01005.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01005.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01005.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01006.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01006.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01006.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01006.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01006.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01006.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01006.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01006.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01006.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01006.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01006.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01006.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01006.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01006.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01006.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01006.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01007.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01007.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01007.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01007.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01007.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01007.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01007.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01007.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01007.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01007.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01007.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01007.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01007.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01007.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01007.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01007.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01008.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01008.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01008.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01008.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01008.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01008.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01008.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01008.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01008.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01008.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01008.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01008.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01008.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01008.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01008.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01008.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01008.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01008.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01008.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01008.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01008.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01008.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01008.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01008.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01009.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01009.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01009.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01009.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01009.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01009.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01009.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01009.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01009.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01009.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01009.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01009.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01009.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01009.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01009.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01009.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01009.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01009.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01009.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01009.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01009.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01009.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01009.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01009.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01009.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01009.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01009.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01009.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01009.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01009.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01010.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01010.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01010.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01010.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01010.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01010.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01010.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01010.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01010.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01010.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01010.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01010.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01010.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01010.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01010.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01010.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01010.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01010.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01010.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01010.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01011.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01011.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01011.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01011.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01011.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01011.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01011.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01011.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01011.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01011.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01011.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01011.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01011.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01011.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01011.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01011.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01011.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01011.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01011.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01011.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01011.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01011.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01011.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01011.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01012.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01012.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01012.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01012.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01012.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01012.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01012.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01012.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01012.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01012.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01012.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01012.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01012.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01012.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01012.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01012.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01013.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01013.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01013.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01013.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01013.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01013.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01013.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01013.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01013.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01013.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01013.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01013.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01013.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01013.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01013.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01013.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01020.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01020.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01020.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01020.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01020.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01020.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01020.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01020.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01020.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01020.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01020.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01020.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01020.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01020.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01020.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01020.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01021.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01021.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01021.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01021.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01021.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01021.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01021.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01021.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01021.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01021.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01021.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01021.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01021.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01021.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01021.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01021.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01022.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01022.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01022.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01022.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01022.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01022.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01022.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01022.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01022.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01022.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01022.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01022.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01022.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01022.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01022.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01022.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01023.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01023.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01023.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01023.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01023.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01023.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01023.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01023.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01023.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01023.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01023.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01023.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01023.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01023.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01023.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01023.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01023.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01023.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01023.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01023.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01023.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01023.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01023.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01023.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01024.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01024.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01024.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01024.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01024.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01024.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01024.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01024.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01024.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01024.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01024.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01024.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01024.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01024.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01024.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01024.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01025.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01025.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01025.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01025.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01025.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01025.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01025.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01025.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01025.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01025.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01025.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01025.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01025.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01025.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01025.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01025.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01026.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01026.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01026.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01026.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01026.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01026.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01026.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01026.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01026.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01026.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01026.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01026.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01026.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01026.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01026.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01026.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01026.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01026.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01026.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01026.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01026.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01026.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01026.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01026.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01040.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01040.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01040.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01040.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01040.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01040.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01040.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01040.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01040.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01040.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01040.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01040.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01040.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01040.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01040.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01040.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01042.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01042.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01042.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01042.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01042.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01042.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01042.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01042.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01042.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01042.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01042.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01042.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01042.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01042.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01042.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01042.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01042.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01042.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01042.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01042.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01042.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01042.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01042.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01042.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01044.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01044.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01044.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01044.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01044.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01044.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01044.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01044.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01044.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01044.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01044.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01044.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01044.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01044.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01044.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01044.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01044.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01044.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01044.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01044.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01044.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01044.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01044.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01044.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01046.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01046.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01046.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01046.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01046.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01046.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01046.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01046.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01046.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01046.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01046.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01046.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01046.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01046.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01046.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01046.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01046.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01046.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01046.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01046.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01046.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01046.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01046.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01046.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01047.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01047.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01047.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01047.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01047.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01047.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01047.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01047.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01047.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01047.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01047.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01047.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01047.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01047.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01047.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01047.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01047.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01047.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01047.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01047.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01047.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01047.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01047.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01047.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01048.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01048.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01048.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01048.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01048.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01048.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01048.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01048.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01048.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01048.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01048.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01048.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01048.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01048.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01048.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01048.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01048.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01048.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01048.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01048.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01048.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01048.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01049.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01049.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01049.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01049.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01049.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01049.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01049.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01049.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01049.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01049.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01049.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01049.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01049.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01049.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01049.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01049.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01049.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01049.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01049.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01049.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01049.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01049.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01049.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01049.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01050.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01050.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01050.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01050.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01050.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01050.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01050.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01050.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01050.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01050.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01050.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01050.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01050.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01050.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01050.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01050.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01050.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01050.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01050.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01050.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01050.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01050.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01050.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01050.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01051.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01051.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01051.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01051.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01051.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01051.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01051.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01051.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01051.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01051.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01051.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01051.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01051.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01051.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01051.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01051.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01051.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01051.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01051.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01051.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01053.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01053.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01053.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01053.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01053.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01053.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01053.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01053.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01053.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01053.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01053.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01053.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01053.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01053.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01053.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01053.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01056.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01056.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01056.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01056.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01056.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01056.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01056.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01056.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01056.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01056.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01056.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01056.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01056.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01056.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01056.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01056.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01057.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01057.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01057.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01057.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01057.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01057.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01057.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01057.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01057.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01057.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01057.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01057.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01057.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01057.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01057.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01057.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01058.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01058.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01058.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01058.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01058.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01058.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01058.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01058.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01058.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01058.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01058.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01058.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01058.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01058.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01058.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01058.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01058.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01058.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01058.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01058.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01058.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01058.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01058.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01058.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01059.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01059.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01059.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01059.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01059.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01059.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01059.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01059.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01059.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01059.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01059.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01059.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01059.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01059.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01059.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01059.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01059.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01059.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01059.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01059.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01059.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01059.biorseo_bgsu_jar3d_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01059.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01059.biorseo_bgsu_jar3d_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01066.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01066.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01066.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01066.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01066.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01066.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01066.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01066.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01066.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01066.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01066.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01066.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01066.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01066.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01066.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01066.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01066.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01066.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01066.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01066.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01066.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01066.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01066.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01066.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01074.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01074.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01074.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01074.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01074.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01074.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01074.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01074.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01074.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01074.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01074.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01074.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01074.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01074.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01074.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01074.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01074.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01074.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01074.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01074.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01074.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01074.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01074.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01074.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01074.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01074.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01074.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01074.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01074.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01074.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01084.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01084.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01084.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01084.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01084.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01084.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01084.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01084.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01084.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01084.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01084.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01084.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01084.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01084.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01084.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01084.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01086.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01086.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01086.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01086.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01086.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01086.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01086.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01086.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01086.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01086.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01086.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01086.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01086.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01086.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01086.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01086.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01097.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01097.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01097.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01097.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01097.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01097.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01097.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01097.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01097.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01097.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01097.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01097.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01097.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01097.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01097.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01097.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01097.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01097.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01097.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01097.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01108.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01108.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01108.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01108.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01108.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01108.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01108.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01108.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01108.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01108.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01108.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01108.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01108.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01108.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01108.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01108.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01111.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01111.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01111.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01111.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01111.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01111.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01111.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01111.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01111.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01111.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01111.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01111.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01111.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01111.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01111.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01111.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01111.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01111.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01111.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01111.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01111.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01111.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01111.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01111.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01111.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01111.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01111.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01112.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01112.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01112.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01112.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01112.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01112.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01112.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01112.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01112.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01112.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01112.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01112.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01112.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01112.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01112.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01112.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01112.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01112.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01112.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01112.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01112.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01112.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01112.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01112.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01112.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01112.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01112.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01112.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01112.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01112.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01112.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01112.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01113.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01113.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01113.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01113.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01113.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01113.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01113.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01113.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01113.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01113.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01113.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01113.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01113.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01113.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01113.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01113.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01113.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01113.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01113.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01113.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01113.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01113.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01113.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01113.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01113.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01113.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01113.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01113.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01113.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01113.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01113.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01114.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01114.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01114.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01114.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01114.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01114.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01114.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01114.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01114.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01114.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01114.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01114.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01114.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01114.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01114.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01114.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01114.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01114.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01114.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01114.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01114.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01114.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01114.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01114.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01115.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01115.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01115.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01115.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01115.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01115.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01115.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01115.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01115.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01115.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01115.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01115.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01115.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01115.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01115.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01115.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01115.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01115.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01115.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01115.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01115.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01115.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01115.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01115.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01115.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01115.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01115.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01115.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01116.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01116.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01116.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01116.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01116.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01116.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01116.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01116.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01116.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01116.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01116.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01116.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01116.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01116.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01116.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01116.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01116.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01116.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01116.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01116.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01116.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01116.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01116.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01116.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01116.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01116.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01116.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01116.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01118.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01118.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01118.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01118.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01118.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01118.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01118.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01118.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01118.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01118.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01118.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01118.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01118.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01118.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01118.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01118.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01118.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01118.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01118.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01118.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01126.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01126.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01126.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01126.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01126.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01126.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01126.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01126.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01126.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01126.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01126.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01126.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01126.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01126.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01126.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01126.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01126.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01126.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01126.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01126.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01126.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01126.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01126.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01126.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01126.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01126.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01126.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01126.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01130.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01130.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01130.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01130.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01130.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01130.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01130.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01130.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01130.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01130.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01130.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01130.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01130.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01130.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01130.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01130.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01130.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01130.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01130.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01130.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01133.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01133.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01133.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01133.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01133.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01133.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01133.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01133.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01133.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01133.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01133.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01133.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01133.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01133.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01133.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01133.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01133.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01133.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01133.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01133.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01134.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01134.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01134.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01134.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01134.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01134.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01134.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01134.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01134.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01134.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01134.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01134.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01134.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01134.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01134.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01134.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01134.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01134.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01134.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01134.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01135.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01135.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01135.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01135.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01135.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01135.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01135.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01135.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01135.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01135.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01135.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01135.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01135.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01135.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01135.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01135.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01135.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01135.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01135.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01135.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01136.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01136.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01136.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01136.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01136.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01136.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01136.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01136.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01136.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01136.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01136.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01136.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01136.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01136.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01136.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01136.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01136.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01136.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01136.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01136.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01136.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01136.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01136.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01136.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01136.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01136.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01136.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01136.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01137.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01137.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01137.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01137.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01137.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01137.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01137.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01137.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01137.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01137.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01137.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01137.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01137.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01137.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01137.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01137.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01137.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01137.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01137.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01137.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01137.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01137.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01137.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01137.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01137.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01137.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01137.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01137.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01138.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01138.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01138.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01138.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01138.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01138.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01138.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01138.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01138.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01138.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01138.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01138.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01138.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01138.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01138.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01138.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01138.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01138.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01138.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01138.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01145.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01145.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01145.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01145.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01145.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01145.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01145.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01145.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01145.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01145.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01145.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01145.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01145.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01145.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01145.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01145.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01145.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01145.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01145.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01145.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01145.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01145.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01145.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01145.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01145.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01145.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01145.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01145.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01146.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01146.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01146.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01146.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01146.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01146.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01146.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01146.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01146.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01146.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01146.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01146.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01146.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01146.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01146.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01146.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01146.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01146.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01146.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01146.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01146.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01146.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01146.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01146.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01146.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01146.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01146.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01146.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01147.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01147.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01147.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01147.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01147.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01147.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01147.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01147.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01147.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01147.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01147.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01147.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01147.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01147.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01147.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01147.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01147.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01147.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01147.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01147.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01148.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01148.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01148.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01148.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01148.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01148.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01148.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01148.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01148.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01148.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01148.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01148.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01148.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01148.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01148.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01148.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01148.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01148.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01148.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01148.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01149.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01149.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01149.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01149.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01149.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01149.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01149.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01149.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01149.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01149.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01149.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01149.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01149.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01149.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01149.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01149.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01149.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01149.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01149.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01149.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01149.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01149.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01149.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01149.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01149.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01149.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01149.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01149.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01151.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01151.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01151.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01151.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01151.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01151.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01151.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01151.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01151.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01151.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01151.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01151.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01151.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01151.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01151.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01151.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01151.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01151.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01151.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01151.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01151.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01151.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01151.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01151.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01151.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01151.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01151.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01151.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01152.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01152.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01152.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01152.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01152.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01152.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01152.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01152.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01152.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01152.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01152.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01152.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01152.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01152.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01152.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01152.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01152.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01152.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01152.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01152.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01152.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01152.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01152.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01152.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01152.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01152.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01152.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01152.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01165.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01165.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01165.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01165.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01165.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01165.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01165.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01165.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01165.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01165.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01165.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01165.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01165.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01165.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01165.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01165.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01165.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01165.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01165.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01165.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01165.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01165.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01165.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01165.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01165.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01165.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01165.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01165.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01168.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01168.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01168.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01168.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01168.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01168.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01168.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01168.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01168.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01168.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01168.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01168.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01168.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01168.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01168.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01168.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01168.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01168.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01168.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01168.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01185.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01185.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01185.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01185.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01185.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01185.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01185.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01185.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01185.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01185.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01185.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01185.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01185.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01185.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01185.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01185.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01185.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01185.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01185.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01185.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01185.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01185.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01185.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01185.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01190.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01190.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01190.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01190.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01190.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01190.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01190.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01190.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01190.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01190.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01190.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01190.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01190.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01190.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01190.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01190.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01190.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01190.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01190.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01190.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01190.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01190.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01190.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01190.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01190.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01190.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01190.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01190.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01190.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01190.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01190.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01190.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01190.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01190.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01194.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01194.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01194.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01194.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01194.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01194.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01194.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01194.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01194.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01194.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01194.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01194.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01194.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01194.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01194.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01194.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01194.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01194.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01194.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01194.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01194.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01194.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01194.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01194.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01194.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01194.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01194.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01194.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01194.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01194.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01194.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01199.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01199.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01199.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01199.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01199.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01199.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01199.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01199.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01199.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01199.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01199.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01199.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01199.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01199.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01199.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01199.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01199.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01199.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01199.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01199.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01199.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01199.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01199.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01199.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01199.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01199.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01199.biorseo_bgsu_jar3d_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01199.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01199.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01199.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01199.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01199.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01199.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01199.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01202.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01202.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01202.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01202.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01202.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01202.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01202.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01202.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01202.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01202.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01202.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01202.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01202.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01202.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01202.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01202.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01202.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01202.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01202.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01202.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01202.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01202.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01202.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01202.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01202.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01202.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01202.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01202.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01205.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01205.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01205.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01205.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01205.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01205.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01205.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01205.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01205.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01205.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01205.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01205.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01205.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01205.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01205.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01205.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01205.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01205.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01205.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01205.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01205.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01205.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01205.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01205.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01205.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01205.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01205.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01205.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01206.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01206.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01206.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01206.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01206.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01206.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01206.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01206.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01206.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01206.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01206.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01206.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01206.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01206.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01206.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01206.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01206.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01206.biorseo_bgsu_jar3d_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01206.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01206.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01206.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01206.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01237.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01237.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01237.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01237.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01237.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01237.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01237.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01237.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01237.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01237.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01237.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01237.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01237.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01237.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01237.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01237.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01237.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01237.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01237.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01237.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01237.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01237.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01237.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01237.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01237.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01237.biorseo_rin_raw_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01237.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01237.biorseo_rin_raw_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01238.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01238.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01238.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01238.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01238.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01238.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01238.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01238.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01238.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01238.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01238.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01238.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01238.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01238.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01238.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01238.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01238.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01238.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01238.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01238.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01238.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01238.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01238.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01238.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01239.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01239.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01239.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01239.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01239.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01239.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01239.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01239.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01239.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01239.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01239.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01239.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01239.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01239.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01239.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01239.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01239.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01239.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01239.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01239.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01239.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01239.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01239.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01239.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01258.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01258.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01258.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01258.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01258.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01258.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01258.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01258.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01258.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01258.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01258.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01258.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01258.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01258.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01258.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01258.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01259.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01259.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01259.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01259.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01259.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01259.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01259.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01259.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01259.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01259.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01259.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01259.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01259.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01259.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01259.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01259.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01259.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01259.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01259.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01259.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01259.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01259.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01259.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01259.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01262.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01262.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01262.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01262.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01262.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01262.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01262.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01262.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01262.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01262.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01262.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01262.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01262.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01262.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01262.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01262.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01262.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01262.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01262.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01262.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01262.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01262.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01262.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01262.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01270.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01270.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01270.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01270.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01270.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01270.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01270.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01270.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01270.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01270.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01270.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01270.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01270.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01270.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01270.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01270.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01270.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01270.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01270.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01270.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01270.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01270.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01270.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01270.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01281.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01281.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01281.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01281.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01281.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01281.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01281.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01281.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01281.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01281.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01281.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01281.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01281.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01281.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01281.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01281.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01281.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01281.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01281.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01281.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01281.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01281.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01281.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01281.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01299.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01299.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01299.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01299.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01299.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01299.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01299.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01299.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01299.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01299.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01299.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01299.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01299.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01299.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01299.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01299.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01313.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01313.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01313.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01313.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01313.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01313.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01313.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01313.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01313.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01313.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01313.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01313.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01313.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01313.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01313.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01313.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01313.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01313.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01313.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01313.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01313.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01313.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01313.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01313.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01332.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01332.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01332.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01332.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01332.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01332.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01332.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01332.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01332.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01332.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01332.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01332.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01332.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01332.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01332.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01332.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01332.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01332.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01332.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01332.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01332.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01332.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01332.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01332.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01337.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01337.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01337.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01337.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01337.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01337.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01337.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01337.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01337.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01337.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01337.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01337.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01337.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01337.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01337.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01337.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01337.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01337.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01337.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01337.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01337.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01337.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01337.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01337.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01338.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01338.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01338.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01338.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01338.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01338.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01338.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01338.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01338.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01338.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01338.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01338.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01338.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01338.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01338.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01338.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01338.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01338.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01338.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01338.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01338.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01338.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01338.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01338.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01340.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01340.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01340.biorseo_desc_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01340.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01340.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01340.biorseo_desc_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01340.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01340.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01340.biorseo_desc_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01340.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01340.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01340.biorseo_desc_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01340.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01340.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01340.biorseo_bgsu_byp_A --func A
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01340.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01340.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01340.biorseo_bgsu_byp_B --func B
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01340.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01340.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01340.biorseo_bgsu_byp_C --func C
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_01340.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_01340.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/PK/PDB_01340.biorseo_bgsu_byp_D --func D
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00002.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00002.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00002.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00002.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00002.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00002.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00002.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00002.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00002.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00002.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00002.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00002.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00002.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00002.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00002.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00002.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00002.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00004.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00004.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00004.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00004.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00004.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00004.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00004.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00004.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00004.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00004.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00004.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00004.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00004.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00004.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00004.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00004.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00004.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00005.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00005.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00005.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00005.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00005.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00005.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00005.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00005.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00005.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00005.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00005.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00005.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00005.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00005.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00005.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00005.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00005.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00006.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00006.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00006.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00006.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00006.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00006.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00006.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00006.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00006.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00006.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00006.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00006.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00006.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00006.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00006.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00006.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00006.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00007.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00007.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00007.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00007.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00007.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00007.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00007.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00007.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00007.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00007.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00007.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00007.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00007.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00007.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00007.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00007.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00007.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00007.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00007.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00007.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00007.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00010.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00010.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00010.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00010.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00010.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00010.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00010.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00010.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00010.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00010.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00010.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00010.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00010.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00010.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00010.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00010.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00010.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00012.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00012.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00012.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00012.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00012.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00012.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00012.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00012.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00012.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00012.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00012.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00012.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00012.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00012.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00012.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00012.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00012.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00013.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00013.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00013.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00013.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00013.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00013.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00013.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00013.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00013.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00013.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00013.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00013.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00013.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00013.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00013.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00013.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00013.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00014.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00014.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00014.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00014.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00014.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00014.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00014.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00014.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00014.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00014.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00014.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00014.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00014.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00014.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00014.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00014.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00014.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00014.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00014.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00014.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00014.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00014.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00014.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00014.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00014.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00014.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00014.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00014.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00016.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00016.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00016.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00016.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00016.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00016.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00016.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00016.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00016.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00016.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00016.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00016.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00016.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00016.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00016.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00016.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00016.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00016.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00016.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00016.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00016.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00016.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00016.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00016.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00016.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00016.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00016.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00016.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00018.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00018.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00018.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00018.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00018.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00018.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00018.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00018.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00018.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00018.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00018.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00018.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00018.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00018.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00018.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00018.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00018.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00018.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00018.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00018.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00018.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00018.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00018.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00018.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00019.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00019.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00019.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00019.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00019.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00019.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00019.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00019.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00019.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00019.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00019.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00019.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00019.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00019.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00019.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00019.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00019.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00019.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00019.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00019.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00019.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00019.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00019.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00019.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00020.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00020.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00020.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00020.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00020.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00020.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00020.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00020.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00020.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00020.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00020.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00020.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00020.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00020.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00020.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00020.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00020.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00021.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00021.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00021.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00021.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00021.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00021.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00021.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00021.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00021.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00021.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00021.biorseo_bgsu_jar3d_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00021.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00021.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00021.biorseo_bgsu_jar3d_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00022.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00022.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00022.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00022.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00022.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00022.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00022.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00022.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00022.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00022.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00022.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00022.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00022.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00022.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00022.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00022.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00022.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00024.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00024.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00024.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00024.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00024.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00024.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00024.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00024.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00024.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00024.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00024.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00024.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00024.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00024.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00024.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00024.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00024.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00024.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00024.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00024.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00024.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00025.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00025.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00025.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00025.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00025.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00025.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00025.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00025.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00025.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00025.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00025.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00025.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00025.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00025.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00025.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00025.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00025.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00025.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00025.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00025.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00025.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00040.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00040.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00040.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00040.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00040.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00040.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00040.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00040.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00040.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00040.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00040.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00040.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00040.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00040.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00040.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00040.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00040.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00041.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00041.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00041.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00041.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00041.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00041.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00041.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00041.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00041.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00041.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00041.biorseo_bgsu_jar3d_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00041.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00041.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00041.biorseo_bgsu_jar3d_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00048.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00048.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00048.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00048.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00048.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00048.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00048.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00048.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00048.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00048.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00048.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00048.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00048.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00048.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00048.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00048.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00048.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00051.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00051.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00051.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00051.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00051.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00051.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00051.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00051.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00051.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00051.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00051.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00051.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00051.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00051.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00051.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00051.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00051.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00053.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00053.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00053.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00053.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00053.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00053.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00053.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00053.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00053.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00053.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00053.biorseo_bgsu_jar3d_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00053.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00053.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00053.biorseo_bgsu_jar3d_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00056.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00056.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00056.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00056.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00056.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00056.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00056.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00056.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00056.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00056.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00056.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00056.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00056.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00056.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00056.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00056.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00056.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00057.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00057.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00057.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00057.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00057.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00057.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00057.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00057.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00057.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00057.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00057.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00057.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00057.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00057.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00057.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00057.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00057.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00059.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00059.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00059.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00059.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00059.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00059.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00059.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00059.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00059.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00059.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00059.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00059.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00059.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00059.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00059.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00059.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00059.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00065.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00065.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00065.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00065.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00065.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00065.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00065.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00065.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00065.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00065.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00065.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00065.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00065.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00065.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00065.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00065.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00065.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00065.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00065.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00065.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00065.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00065.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00065.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00065.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00068.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00068.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00068.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00068.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00068.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00068.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00068.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00068.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00068.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00068.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00068.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00068.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00068.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00068.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00068.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00068.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00068.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00068.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00068.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00068.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00068.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00068.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00068.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00068.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00068.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00068.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00068.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00068.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00069.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00069.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00069.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00069.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00069.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00069.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00069.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00069.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00069.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00069.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00069.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00069.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00069.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00069.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00069.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00069.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00069.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00069.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00069.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00069.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00069.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00069.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00069.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00069.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00069.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00069.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00069.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00069.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00073.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00073.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00073.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00073.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00073.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00073.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00073.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00073.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00073.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00073.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00073.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00073.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00073.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00073.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00073.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00073.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00073.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00073.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00073.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00073.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00073.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00073.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00073.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00073.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00083.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00083.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00083.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00083.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00083.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00083.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00083.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00083.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00083.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00083.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00083.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00083.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00083.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00083.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00083.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00083.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00083.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00083.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00083.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00083.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00083.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00083.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00083.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00083.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00083.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00083.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00083.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00083.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00084.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00084.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00084.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00084.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00084.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00084.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00084.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00084.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00084.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00084.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00084.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00084.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00084.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00084.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00084.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00084.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00084.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00084.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00084.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00084.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00084.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00085.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00085.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00085.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00085.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00085.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00085.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00085.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00085.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00085.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00085.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00085.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00085.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00085.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00085.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00085.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00085.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00085.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00085.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00085.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00085.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00085.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00085.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00085.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00085.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00085.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00085.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00085.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00085.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00086.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00086.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00086.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00086.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00086.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00086.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00086.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00086.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00086.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00086.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00086.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00086.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00086.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00086.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00086.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00086.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00086.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00086.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00086.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00086.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00086.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00087.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00087.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00087.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00087.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00087.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00087.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00087.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00087.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00087.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00087.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00087.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00087.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00087.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00087.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00087.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00087.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00087.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00087.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00087.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00087.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00087.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00087.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00087.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00087.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00087.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00087.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00087.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00087.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00088.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00088.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00088.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00088.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00088.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00088.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00088.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00088.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00088.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00088.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00088.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00088.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00088.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00088.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00088.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00088.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00088.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00088.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00088.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00088.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00088.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00088.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00088.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00088.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00089.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00089.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00089.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00089.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00089.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00089.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00089.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00089.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00089.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00089.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00089.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00089.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00089.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00089.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00089.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00089.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00089.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00089.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00089.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00089.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00089.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00089.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00089.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00089.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00089.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00089.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00089.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00089.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00090.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00090.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00090.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00090.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00090.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00090.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00090.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00090.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00090.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00090.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00090.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00090.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00090.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00090.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00090.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00090.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00090.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00090.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00090.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00090.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00090.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00090.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00090.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00090.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00090.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00090.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00090.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00090.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00091.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00091.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00091.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00091.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00091.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00091.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00091.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00091.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00091.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00091.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00091.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00091.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00091.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00091.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00091.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00091.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00091.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00091.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00091.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00091.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00091.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00091.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00091.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00091.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00091.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00091.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00091.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00091.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00092.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00092.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00092.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00092.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00092.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00092.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00092.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00092.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00092.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00092.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00092.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00092.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00092.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00092.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00092.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00092.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00092.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00092.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00092.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00092.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00092.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00092.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00092.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00092.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00092.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00092.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00092.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00092.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00093.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00093.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00093.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00093.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00093.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00093.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00093.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00093.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00093.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00093.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00093.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00093.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00093.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00093.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00093.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00093.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00093.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00093.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00093.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00093.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00093.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00093.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00093.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00093.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00093.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00093.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00093.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00093.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00095.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00095.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00095.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00095.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00095.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00095.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00095.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00095.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00095.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00095.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00095.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00095.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00095.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00095.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00095.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00095.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00095.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00095.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00095.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00095.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00095.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00095.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00095.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00095.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00097.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00097.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00097.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00097.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00097.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00097.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00097.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00097.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00097.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00097.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00097.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00097.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00097.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00097.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00097.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00097.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00097.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00098.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00098.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00098.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00098.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00098.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00098.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00098.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00098.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00098.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00098.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00098.biorseo_bgsu_jar3d_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00098.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00098.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00098.biorseo_bgsu_jar3d_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00099.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00099.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00099.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00099.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00099.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00099.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00099.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00099.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00099.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00099.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00099.biorseo_bgsu_jar3d_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00099.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00099.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00099.biorseo_bgsu_jar3d_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00100.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00100.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00100.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00100.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00100.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00100.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00100.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00100.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00100.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00100.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00100.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00100.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00100.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00100.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00100.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00100.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00100.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00100.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00100.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00100.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00100.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00100.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00100.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00100.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00100.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00100.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00100.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00100.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00103.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00103.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00103.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00103.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00103.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00103.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00103.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00103.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00103.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00103.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00103.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00103.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00103.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00103.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00103.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00103.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00103.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00103.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00103.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00103.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00103.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00103.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00103.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00103.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00108.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00108.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00108.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00108.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00108.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00108.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00108.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00108.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00108.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00108.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00108.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00108.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00108.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00108.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00108.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00108.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00108.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00109.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00109.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00109.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00109.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00109.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00109.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00109.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00109.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00109.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00109.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00109.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00109.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00109.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00109.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00109.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00109.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00109.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00109.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00109.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00109.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00109.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00109.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00109.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00109.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00110.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00110.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00110.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00110.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00110.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00110.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00110.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00110.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00110.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00110.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00110.biorseo_bgsu_jar3d_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00110.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00110.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00110.biorseo_bgsu_jar3d_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00114.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00114.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00114.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00114.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00114.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00114.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00114.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00114.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00114.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00114.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00114.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00114.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00114.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00114.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00114.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00114.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00114.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00114.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00114.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00114.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00114.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00118.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00118.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00118.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00118.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00118.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00118.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00118.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00118.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00118.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00118.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00118.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00118.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00118.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00118.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00118.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00118.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00118.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00118.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00118.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00118.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00118.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00119.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00119.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00119.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00119.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00119.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00119.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00119.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00119.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00119.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00119.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00119.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00119.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00119.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00119.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00119.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00119.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00119.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00119.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00119.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00119.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00119.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00119.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00119.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00119.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00123.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00123.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00123.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00123.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00123.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00123.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00123.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00123.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00123.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00123.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00123.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00123.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00123.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00123.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00123.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00123.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00123.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00123.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00123.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00123.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00123.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00123.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00123.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00123.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00123.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00123.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00123.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00123.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00123.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00123.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00124.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00124.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00124.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00124.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00124.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00124.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00124.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00124.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00124.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00124.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00124.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00124.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00124.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00124.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00124.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00124.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00124.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00124.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00124.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00124.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00124.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00124.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00124.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00124.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00128.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00128.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00128.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00128.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00128.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00128.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00128.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00128.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00128.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00128.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00128.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00128.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00128.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00128.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00128.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00128.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00128.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00128.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00128.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00128.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00128.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00128.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00128.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00128.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00129.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00129.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00129.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00129.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00129.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00129.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00129.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00129.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00129.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00129.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00129.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00129.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00129.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00129.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00129.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00129.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00129.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00129.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00129.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00129.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00129.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00129.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00129.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00129.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00130.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00130.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00130.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00130.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00130.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00130.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00130.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00130.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00130.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00130.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00130.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00130.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00130.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00130.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00130.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00130.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00130.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00131.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00131.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00131.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00131.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00131.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00131.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00131.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00131.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00131.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00131.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00131.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00131.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00131.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00131.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00131.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00131.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00131.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00131.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00131.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00131.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00131.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00131.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00131.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00131.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00133.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00133.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00133.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00133.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00133.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00133.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00133.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00133.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00133.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00133.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00133.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00133.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00133.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00133.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00133.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00133.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00133.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00134.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00134.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00134.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00134.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00134.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00134.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00134.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00134.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00134.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00134.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00134.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00134.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00134.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00134.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00134.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00134.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00134.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00135.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00135.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00135.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00135.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00135.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00135.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00135.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00135.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00135.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00135.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00135.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00135.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00135.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00135.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00135.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00135.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00135.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00138.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00138.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00138.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00138.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00138.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00138.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00138.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00138.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00138.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00138.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00138.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00138.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00138.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00138.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00138.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00138.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00138.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00139.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00139.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00139.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00139.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00139.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00139.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00139.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00139.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00139.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00139.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00139.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00139.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00139.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00139.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00139.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00139.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00139.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00139.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00139.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00139.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00139.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00139.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00139.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00139.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00141.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00141.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00141.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00141.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00141.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00141.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00141.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00141.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00141.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00141.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00141.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00141.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00141.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00141.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00141.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00141.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00141.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00141.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00141.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00141.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00141.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00141.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00141.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00141.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00147.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00147.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00147.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00147.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00147.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00147.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00147.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00147.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00147.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00147.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00147.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00147.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00147.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00147.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00147.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00147.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00147.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00148.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00148.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00148.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00148.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00148.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00148.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00148.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00148.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00148.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00148.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00148.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00148.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00148.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00148.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00148.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00148.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00148.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00155.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00155.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00155.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00155.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00155.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00155.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00155.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00155.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00155.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00155.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00155.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00155.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00155.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00155.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00155.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00155.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00155.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00155.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00155.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00155.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00155.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00155.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00155.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00155.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00160.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00160.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00160.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00160.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00160.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00160.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00160.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00160.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00160.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00160.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00160.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00160.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00160.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00160.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00160.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00160.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00160.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00160.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00160.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00160.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00160.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00160.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00160.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00160.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00168.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00168.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00168.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00168.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00168.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00168.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00168.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00168.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00168.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00168.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00168.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00168.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00168.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00168.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00168.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00168.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00168.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00171.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00171.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00171.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00171.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00171.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00171.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00171.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00171.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00171.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00171.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00171.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00171.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00171.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00171.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00171.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00171.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00171.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00171.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00171.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00171.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00171.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00171.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00171.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00171.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00172.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00172.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00172.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00172.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00172.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00172.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00172.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00172.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00172.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00172.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00172.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00172.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00172.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00172.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00172.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00172.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00172.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00172.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00172.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00172.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00172.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00172.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00172.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00172.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00173.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00173.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00173.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00173.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00173.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00173.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00173.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00173.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00173.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00173.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00173.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00173.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00173.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00173.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00173.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00173.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00173.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00173.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00173.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00173.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00173.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00173.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00173.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00173.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00177.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00177.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00177.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00177.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00177.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00177.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00177.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00177.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00177.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00177.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00177.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00177.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00177.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00177.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00177.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00177.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00177.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00177.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00177.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00177.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00177.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00177.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00177.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00177.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00180.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00180.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00180.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00180.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00180.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00180.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00180.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00180.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00180.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00180.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00180.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00180.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00180.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00180.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00180.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00180.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00180.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00180.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00180.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00180.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00180.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00180.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00180.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00180.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00184.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00184.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00184.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00184.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00184.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00184.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00184.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00184.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00184.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00184.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00184.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00184.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00184.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00184.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00184.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00184.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00184.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00184.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00184.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00184.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00184.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00184.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00184.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00184.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00185.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00185.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00185.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00185.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00185.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00185.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00185.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00185.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00185.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00185.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00185.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00185.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00185.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00185.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00185.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00185.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00185.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00185.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00185.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00186.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00186.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00186.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00186.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00186.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00186.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00186.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00186.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00186.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00186.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00186.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00186.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00186.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00186.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00186.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00186.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00186.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00186.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00186.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00186.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00186.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00186.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00186.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00186.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00186.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00186.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00191.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00191.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00191.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00191.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00191.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00191.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00191.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00191.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00191.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00191.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00191.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00191.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00191.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00191.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00191.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00191.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00191.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00191.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00191.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00191.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00191.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00191.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00191.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00191.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00191.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00191.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00191.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00191.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00197.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00197.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00197.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00197.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00197.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00197.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00197.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00197.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00197.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00197.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00197.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00197.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00197.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00197.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00197.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00197.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00197.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00197.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00197.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00197.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00197.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00197.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00197.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00197.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00201.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00201.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00201.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00201.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00201.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00201.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00201.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00201.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00201.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00201.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00201.biorseo_bgsu_jar3d_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00201.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00201.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00201.biorseo_bgsu_jar3d_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00206.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00206.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00206.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00206.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00206.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00206.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00206.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00206.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00206.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00206.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00206.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00206.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00206.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00206.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00206.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00206.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00206.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00209.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00209.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00209.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00209.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00209.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00209.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00209.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00209.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00209.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00209.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00209.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00209.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00209.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00209.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00209.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00209.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00209.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00209.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00209.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00209.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00209.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00209.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00209.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00209.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00216.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00216.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00216.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00216.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00216.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00216.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00216.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00216.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00216.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00216.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00216.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00216.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00216.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00216.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00216.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00216.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00216.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00216.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00216.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00216.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00216.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00216.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00216.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00216.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00217.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00217.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00217.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00217.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00217.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00217.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00217.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00217.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00217.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00217.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00217.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00217.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00217.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00217.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00217.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00217.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00217.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00217.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00217.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00217.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00217.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00217.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00217.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00217.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00218.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00218.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00218.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00218.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00218.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00218.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00218.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00218.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00218.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00218.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00218.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00218.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00218.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00218.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00218.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00218.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00218.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00218.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00218.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00218.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00218.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00218.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00218.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00218.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00219.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00219.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00219.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00219.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00219.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00219.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00219.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00219.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00219.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00219.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00219.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00219.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00219.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00219.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00219.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00219.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00219.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00219.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00219.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00219.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00219.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00219.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00219.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00219.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00224.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00224.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00224.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00224.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00224.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00224.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00224.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00224.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00224.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00224.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00224.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00224.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00224.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00224.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00224.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00224.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00224.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00224.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00224.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00224.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00224.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00224.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00224.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00224.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00225.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00225.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00225.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00225.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00225.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00225.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00225.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00225.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00225.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00225.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00225.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00225.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00225.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00225.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00225.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00225.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00225.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00225.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00225.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00225.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00225.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00225.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00225.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00225.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00225.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00225.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00225.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00225.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00226.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00226.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00226.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00226.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00226.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00226.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00226.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00226.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00226.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00226.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00226.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00226.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00226.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00226.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00226.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00226.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00226.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00226.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00226.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00226.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00226.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00226.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00226.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00226.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00226.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00226.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00226.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00226.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00229.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00229.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00229.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00229.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00229.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00229.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00229.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00229.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00229.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00229.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00229.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00229.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00229.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00229.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00229.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00229.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00229.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00229.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00229.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00229.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00229.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00229.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00229.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00229.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00231.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00231.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00231.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00231.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00231.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00231.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00231.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00231.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00231.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00231.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00231.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00231.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00231.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00231.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00231.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00231.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00231.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00231.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00231.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00231.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00231.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00231.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00231.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00231.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00231.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00231.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00231.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00231.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00240.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00240.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00240.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00240.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00240.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00240.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00240.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00240.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00240.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00240.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00240.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00240.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00240.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00240.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00240.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00240.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00240.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00240.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00240.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00240.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00240.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00240.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00240.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00240.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00241.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00241.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00241.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00241.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00241.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00241.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00241.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00241.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00241.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00241.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00241.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00241.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00241.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00241.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00241.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00241.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00241.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00241.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00241.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00241.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00241.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00241.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00241.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00241.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00243.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00243.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00243.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00243.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00243.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00243.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00243.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00243.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00243.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00243.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00243.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00243.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00243.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00243.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00243.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00243.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00243.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00243.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00243.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00243.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00243.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00243.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00243.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00243.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00245.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00245.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00245.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00245.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00245.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00245.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00245.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00245.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00245.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00245.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00245.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00245.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00245.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00245.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00245.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00245.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00245.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00245.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00245.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00245.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00245.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00245.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00245.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00245.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00256.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00256.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00256.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00256.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00256.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00256.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00256.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00256.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00256.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00256.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00256.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00256.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00256.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00256.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00256.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00256.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00256.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00256.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00256.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00256.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00256.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00256.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00256.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00256.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00258.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00258.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00258.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00258.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00258.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00258.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00258.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00258.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00258.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00258.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00258.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00258.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00258.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00258.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00258.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00258.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00258.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00269.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00269.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00269.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00269.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00269.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00269.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00269.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00269.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00269.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00269.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00269.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00269.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00269.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00269.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00269.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00269.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00269.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00269.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00269.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00269.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00269.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00269.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00269.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00269.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00285.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00285.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00285.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00285.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00285.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00285.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00285.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00285.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00285.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00285.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00285.biorseo_bgsu_jar3d_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00285.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00285.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00285.biorseo_bgsu_jar3d_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00286.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00286.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00286.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00286.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00286.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00286.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00286.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00286.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00286.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00286.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00286.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00286.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00286.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00286.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00286.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00286.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00286.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00286.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00286.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00286.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00286.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00286.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00286.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00286.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00288.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00288.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00288.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00288.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00288.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00288.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00288.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00288.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00288.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00288.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00288.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00288.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00288.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00288.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00288.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00288.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00288.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00288.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00288.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00288.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00288.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00288.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00288.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00288.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00289.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00289.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00289.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00289.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00289.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00289.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00289.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00289.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00289.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00289.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00289.biorseo_bgsu_jar3d_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00289.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00289.biorseo_bgsu_jar3d_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00289.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00289.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00289.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00293.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00293.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00293.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00293.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00293.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00293.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00293.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00293.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00293.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00293.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00293.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00293.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00293.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00293.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00293.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00293.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00293.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00293.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00293.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00293.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00293.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00293.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00293.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00293.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00299.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00299.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00299.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00299.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00299.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00299.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00299.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00299.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00299.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00299.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00299.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00299.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00299.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00299.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00299.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00299.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00299.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00303.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00303.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00303.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00303.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00303.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00303.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00303.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00303.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00303.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00303.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00303.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00303.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00303.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00303.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00303.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00303.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00303.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00303.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00303.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00303.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00303.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00303.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00303.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00303.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00303.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00303.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00303.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00304.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00304.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00304.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00304.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00304.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00304.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00304.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00304.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00304.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00304.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00304.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00304.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00304.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00304.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00304.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00304.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00304.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00304.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00304.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00304.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00304.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00304.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00304.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00304.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00304.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00304.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00304.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00304.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00304.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00304.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00306.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00306.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00306.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00306.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00306.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00306.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00306.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00306.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00306.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00306.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00306.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00306.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00306.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00306.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00306.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00306.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00306.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00306.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00306.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00306.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00306.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00306.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00306.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00306.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00312.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00312.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00312.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00312.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00312.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00312.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00312.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00312.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00312.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00312.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00312.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00312.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00312.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00312.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00312.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00312.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00312.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00312.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00312.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00312.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00312.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00312.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00312.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00312.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00317.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00317.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00317.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00317.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00317.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00317.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00317.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00317.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00317.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00317.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00317.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00317.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00317.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00317.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00317.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00317.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00317.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00317.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00317.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00317.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00317.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00317.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00317.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00317.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00335.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00335.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00335.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00335.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00335.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00335.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00335.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00335.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00335.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00335.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00335.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00335.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00335.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00335.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00335.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00335.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00335.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00335.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00335.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00335.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00335.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00335.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00335.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00335.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00335.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00335.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00335.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00335.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00335.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00335.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00335.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00335.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00339.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00339.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00339.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00339.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00339.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00339.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00339.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00339.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00339.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00339.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00339.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00339.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00339.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00339.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00339.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00339.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00339.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00339.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00339.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00339.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00339.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00339.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00339.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00339.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00339.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00339.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00339.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00339.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00341.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00341.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00341.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00341.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00341.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00341.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00341.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00341.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00341.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00341.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00341.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00341.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00341.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00341.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00341.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00341.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00341.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00341.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00341.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00341.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00341.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00341.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00341.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00341.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00341.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00341.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00341.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00341.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00346.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00346.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00346.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00346.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00346.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00346.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00346.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00346.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00346.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00346.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00346.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00346.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00346.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00346.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00346.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00346.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00346.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00346.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00346.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00346.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00346.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00346.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00346.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00346.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00346.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00346.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00346.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00346.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00346.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00346.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00346.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00346.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00346.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00346.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00352.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00352.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00352.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00352.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00352.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00352.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00352.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00352.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00352.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00352.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00352.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00352.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00352.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00352.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00352.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00352.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00352.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00352.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00352.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00352.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00352.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00352.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00352.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00352.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00352.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00352.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00352.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00352.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00357.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00357.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00357.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00357.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00357.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00357.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00357.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00357.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00357.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00357.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00357.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00357.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00357.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00357.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00357.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00357.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00357.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00357.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00357.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00357.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00357.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00357.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00357.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00357.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00357.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00357.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00357.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00357.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00361.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00361.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00361.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00361.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00361.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00361.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00361.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00361.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00361.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00361.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00361.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00361.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00361.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00361.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00361.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00361.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00361.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00361.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00361.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00361.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00361.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00361.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00361.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00361.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00361.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00361.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00361.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00361.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00362.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00362.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00362.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00362.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00362.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00362.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00362.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00362.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00362.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00362.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00362.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00362.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00362.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00362.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00362.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00362.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00362.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00362.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00362.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00362.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00362.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00362.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00362.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00362.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00362.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00362.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00362.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00362.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00373.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00373.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00373.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00373.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00373.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00373.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00373.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00373.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00373.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00373.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00373.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00373.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00373.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00373.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00373.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00373.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00373.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00373.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00373.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00373.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00373.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00373.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00373.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00373.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00373.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00373.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00373.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00373.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00374.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00374.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00374.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00374.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00374.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00374.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00374.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00374.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00374.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00374.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00374.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00374.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00374.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00374.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00374.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00374.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00374.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00374.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00374.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00374.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00374.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00374.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00374.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00374.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00374.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00374.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00374.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00374.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00376.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00376.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00376.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00376.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00376.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00376.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00376.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00376.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00376.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00376.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00376.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00376.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00376.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00376.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00376.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00376.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00376.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00376.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00376.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00376.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00376.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00376.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00376.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00376.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00376.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00376.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00376.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00376.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00377.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00377.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00377.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00377.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00377.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00377.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00377.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00377.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00377.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00377.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00377.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00377.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00377.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00377.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00377.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00377.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00377.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00377.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00377.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00377.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00377.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00377.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00377.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00377.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00377.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00377.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00377.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00377.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00383.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00383.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00383.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00383.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00383.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00383.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00383.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00383.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00383.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00383.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00383.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00383.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00383.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00383.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00383.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00383.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00383.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00383.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00383.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00383.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00383.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00383.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00383.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00383.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00383.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00383.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00383.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00383.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00402.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00402.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00402.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00402.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00402.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00402.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00402.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00402.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00402.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00402.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00402.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00402.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00402.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00402.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00402.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00402.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00402.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00402.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00402.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00402.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00402.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00402.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00402.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00407.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00407.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00407.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00407.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00407.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00407.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00407.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00407.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00407.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00407.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00407.biorseo_bgsu_jar3d_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00407.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00407.biorseo_bgsu_jar3d_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00407.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00407.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00407.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00420.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00420.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00420.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00420.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00420.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00420.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00420.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00420.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00420.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00420.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00420.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00420.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00420.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00420.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00420.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00420.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00420.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00420.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00420.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00420.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00420.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00420.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00420.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00420.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00420.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00420.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00420.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00420.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00425.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00425.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00425.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00425.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00425.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00425.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00425.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00425.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00425.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00425.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00425.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00425.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00425.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00425.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00425.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00425.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00425.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00425.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00425.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00425.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00425.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00425.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00425.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00425.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00425.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00425.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00425.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00425.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00426.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00426.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00426.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00426.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00426.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00426.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00426.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00426.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00426.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00426.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00426.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00426.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00426.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00426.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00426.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00426.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00426.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00426.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00426.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00426.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00426.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00426.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00426.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00426.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00426.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00426.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00426.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00426.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00434.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00434.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00434.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00434.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00434.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00434.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00434.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00434.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00434.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00434.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00434.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00434.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00434.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00434.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00434.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00434.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00434.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00434.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00434.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00434.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00434.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00434.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00434.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00434.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00434.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00434.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00434.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00434.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00474.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00474.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00474.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00474.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00474.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00474.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00474.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00474.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00474.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00474.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00474.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00474.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00474.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00474.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00474.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00474.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00474.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00474.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00474.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00474.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00474.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00474.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00474.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00481.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00481.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00481.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00481.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00481.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00481.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00481.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00481.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00481.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00481.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00481.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00481.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00481.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00481.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00481.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00481.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00481.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00481.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00481.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00481.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00481.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00481.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00481.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00481.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00481.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00481.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00481.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00481.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00482.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00482.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00482.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00482.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00482.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00482.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00482.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00482.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00482.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00482.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00482.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00482.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00482.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00482.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00482.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00482.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00482.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00482.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00482.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00482.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00482.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00482.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00482.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00482.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00482.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00482.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00482.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00482.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00483.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00483.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00483.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00483.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00483.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00483.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00483.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00483.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00483.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00483.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00483.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00483.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00483.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00483.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00483.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00483.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00483.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00483.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00483.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00483.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00483.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00483.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00483.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00487.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00487.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00487.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00487.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00487.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00487.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00487.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00487.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00487.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00487.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00487.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00487.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00487.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00487.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00487.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00487.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00487.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00487.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00487.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00487.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00487.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00487.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00487.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00487.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00487.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00487.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00487.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00487.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00495.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00495.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00495.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00495.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00495.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00495.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00495.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00495.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00495.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00495.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00495.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00495.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00495.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00495.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00495.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00495.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00495.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00495.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00495.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00495.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00495.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00495.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00495.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00495.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00495.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00495.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00495.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00495.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00497.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00497.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00497.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00497.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00497.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00497.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00497.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00497.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00497.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00497.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00497.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00497.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00497.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00497.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00497.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00497.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00497.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00497.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00497.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00497.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00497.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00497.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00497.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00497.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00497.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00497.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00497.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00497.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00513.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00513.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00513.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00513.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00513.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00513.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00513.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00513.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00513.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00513.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00513.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00513.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00513.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00513.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00513.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00513.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00513.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00513.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00513.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00513.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00513.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00513.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00513.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00513.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00513.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00513.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00513.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00513.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00526.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00526.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00526.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00526.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00526.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00526.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00526.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00526.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00526.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00526.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00526.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00526.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00526.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00526.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00526.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00526.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00526.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00526.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00526.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00526.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00526.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00535.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00535.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00535.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00535.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00535.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00535.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00535.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00535.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00535.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00535.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00535.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00535.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00535.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00535.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00535.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00535.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00535.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00535.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00535.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00535.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00535.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00535.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00535.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00547.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00547.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00547.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00547.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00547.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00547.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00547.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00547.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00547.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00547.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00547.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00547.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00547.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00547.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00547.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00547.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00547.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00547.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00547.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00547.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00547.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00547.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00547.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00547.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00547.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00547.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00547.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00547.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00547.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00547.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00547.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00553.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00553.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00553.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00553.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00553.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00553.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00553.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00553.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00553.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00553.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00553.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00553.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00553.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00553.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00553.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00553.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00553.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00553.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00553.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00553.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00553.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00553.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00553.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00553.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00553.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00553.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00553.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00553.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00570.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00570.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00570.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00570.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00570.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00570.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00570.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00570.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00570.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00570.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00570.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00570.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00570.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00570.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00570.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00570.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00570.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00570.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00570.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00570.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00570.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00570.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00570.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00570.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00570.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00570.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00570.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00570.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00574.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00574.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00574.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00574.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00574.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00574.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00574.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00574.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00574.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00574.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00574.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00574.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00574.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00574.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00574.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00574.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00574.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00574.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00574.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00574.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00574.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00574.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00574.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00574.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00574.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00574.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00574.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00574.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00588.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00588.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00588.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00588.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00588.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00588.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00588.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00588.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00588.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00588.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00588.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00588.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00588.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00588.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00588.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00588.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00588.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00588.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00588.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00588.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00588.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00588.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00588.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00588.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00588.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00588.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00588.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00588.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00590.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00590.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00590.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00590.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00590.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00590.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00590.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00590.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00590.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00590.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00590.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00590.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00590.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00590.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00590.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00590.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00590.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00590.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00590.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00590.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00590.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00590.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00590.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00590.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00590.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00590.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00590.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00590.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00603.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00603.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00603.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00603.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00603.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00603.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00603.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00603.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00603.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00603.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00603.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00603.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00603.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00603.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00603.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00603.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00603.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00603.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00603.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00603.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00603.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00603.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00603.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00603.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00603.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00603.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00603.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00603.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00617.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00617.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00617.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00617.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00617.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00617.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00617.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00617.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00617.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00617.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00617.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00617.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00617.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00617.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00617.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00617.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00617.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00617.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00617.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00617.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00617.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00617.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00617.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00617.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00617.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00617.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00617.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00617.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00620.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00620.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00620.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00620.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00620.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00620.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00620.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00620.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00620.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00620.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00620.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00620.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00620.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00620.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00620.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00620.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00620.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00620.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00620.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00620.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00620.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00620.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00620.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00620.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00620.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00620.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00620.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00620.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00621.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00621.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00621.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00621.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00621.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00621.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00621.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00621.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00621.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00621.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00621.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00621.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00621.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00621.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00621.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00621.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00621.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00621.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00621.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00621.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00621.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00621.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00621.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00621.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00621.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00621.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00621.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00621.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00627.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00627.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00627.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00627.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00627.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00627.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00627.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00627.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00627.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00627.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00627.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00627.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00627.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00627.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00627.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00627.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00627.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00627.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00627.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00627.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00627.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00627.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00627.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00627.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00627.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00627.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00627.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00627.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00637.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00637.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00637.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00637.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00637.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00637.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00637.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00637.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00637.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00637.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00637.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00637.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00637.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00637.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00637.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00637.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00637.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00637.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00637.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00637.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00637.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00637.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00637.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00648.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00648.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00648.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00648.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00648.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00648.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00648.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00648.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00648.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00648.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00648.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00648.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00648.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00648.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00648.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00648.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00648.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00648.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00648.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00648.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00648.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00648.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00648.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00648.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00648.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00648.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00648.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00648.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00649.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00649.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00649.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00649.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00649.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00649.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00649.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00649.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00649.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00649.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00649.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00649.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00649.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00649.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00649.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00649.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00649.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00649.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00649.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00649.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00649.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00649.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00649.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00649.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00649.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00649.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00649.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00649.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00664.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00664.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00664.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00664.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00664.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00664.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00664.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00664.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00664.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00664.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00664.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00664.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00664.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00664.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00664.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00664.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00664.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00664.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00664.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00664.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00664.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00664.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00664.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00664.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00664.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00664.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00664.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00664.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00668.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00668.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00668.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00668.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00668.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00668.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00668.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00668.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00668.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00668.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00668.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00668.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00668.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00668.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00668.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00668.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00668.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00668.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00668.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00668.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00668.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00668.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00668.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00668.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00668.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00668.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00668.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00668.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00669.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00669.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00669.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00669.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00669.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00669.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00669.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00669.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00669.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00669.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00669.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00669.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00669.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00669.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00669.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00669.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00669.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00669.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00669.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00669.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00669.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00669.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00669.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00669.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00669.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00669.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00669.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00669.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00670.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00670.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00670.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00670.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00670.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00670.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00670.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00670.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00670.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00670.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00670.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00670.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00670.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00670.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00670.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00670.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00670.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00670.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00670.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00670.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00670.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00670.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00670.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00670.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00670.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00670.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00670.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00670.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00671.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00671.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00671.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00671.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00671.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00671.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00671.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00671.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00671.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00671.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00671.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00671.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00671.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00671.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00671.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00671.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00671.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00671.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00671.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00671.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00671.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00671.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00671.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00671.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00671.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00671.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00671.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00671.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00672.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00672.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00672.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00672.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00672.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00672.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00672.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00672.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00672.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00672.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00672.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00672.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00672.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00672.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00672.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00672.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00672.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00672.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00672.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00672.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00672.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00672.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00672.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00672.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00672.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00672.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00672.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00672.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00673.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00673.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00673.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00673.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00673.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00673.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00673.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00673.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00673.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00673.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00673.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00673.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00673.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00673.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00673.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00673.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00673.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00673.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00673.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00673.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00673.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00673.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00673.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00674.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00674.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00674.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00674.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00674.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00674.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00674.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00674.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00674.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00674.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00674.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00674.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00674.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00674.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00674.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00674.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00674.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00674.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00674.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00674.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00674.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00674.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00674.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00691.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00691.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00691.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00691.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00691.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00691.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00691.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00691.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00691.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00691.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00691.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00691.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00691.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00691.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00691.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00691.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00691.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00691.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00691.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00691.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00691.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00691.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00691.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00691.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00691.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00691.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00691.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00691.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00702.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00702.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00702.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00702.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00702.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00702.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00702.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00702.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00702.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00702.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00702.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00702.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00702.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00702.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00702.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00702.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00702.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00702.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00702.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00702.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00702.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00702.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00702.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00705.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00705.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00705.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00705.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00705.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00705.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00705.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00705.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00705.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00705.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00705.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00705.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00705.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00705.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00705.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00705.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00705.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00705.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00705.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00705.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00705.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00705.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00705.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00705.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00705.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00705.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00705.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00705.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00706.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00706.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00706.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00706.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00706.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00706.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00706.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00706.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00706.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00706.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00706.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00706.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00706.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00706.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00706.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00706.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00706.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00706.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00706.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00706.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00706.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00706.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00706.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00706.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00706.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00706.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00706.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00706.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00714.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00714.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00714.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00714.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00714.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00714.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00714.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00714.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00714.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00714.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00714.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00714.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00714.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00714.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00714.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00714.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00714.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00714.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00714.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00714.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00714.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00714.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00714.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00715.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00715.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00715.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00715.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00715.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00715.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00715.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00715.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00715.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00715.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00715.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00715.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00715.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00715.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00715.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00715.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00715.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00715.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00715.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00715.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00715.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00715.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00715.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00716.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00716.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00716.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00716.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00716.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00716.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00716.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00716.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00716.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00716.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00716.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00716.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00716.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00716.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00716.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00716.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00716.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00716.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00716.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00716.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00716.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00716.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00716.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00721.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00721.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00721.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00721.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00721.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00721.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00721.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00721.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00721.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00721.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00721.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00721.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00721.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00721.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00721.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00721.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00721.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00721.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00721.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00721.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00721.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00721.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00721.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00721.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00721.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00721.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00721.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00721.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00727.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00727.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00727.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00727.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00727.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00727.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00727.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00727.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00727.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00727.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00727.biorseo_bgsu_jar3d_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00727.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00727.biorseo_bgsu_jar3d_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00727.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00727.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00727.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00730.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00730.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00730.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00730.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00730.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00730.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00730.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00730.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00730.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00730.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00730.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00730.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00730.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00730.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00730.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00730.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00730.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00730.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00730.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00730.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00730.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00730.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00730.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00730.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00730.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00730.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00730.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00730.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00737.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00737.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00737.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00737.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00737.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00737.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00737.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00737.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00737.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00737.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00737.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00737.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00737.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00737.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00737.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00737.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00737.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00737.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00737.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00737.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00737.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00737.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00737.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00737.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00737.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00737.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00737.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00737.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00742.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00742.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00742.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00742.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00742.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00742.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00742.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00742.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00742.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00742.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00742.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00742.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00742.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00742.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00742.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00742.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00742.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00742.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00742.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00742.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00742.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00742.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00742.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00742.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00742.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00742.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00742.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00742.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00742.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00742.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00742.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00743.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00743.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00743.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00743.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00743.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00743.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00743.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00743.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00743.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00743.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00743.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00743.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00743.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00743.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00743.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00743.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00743.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00743.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00743.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00743.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00743.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00743.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00743.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00746.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00746.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00746.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00746.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00746.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00746.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00746.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00746.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00746.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00746.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00746.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00746.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00746.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00746.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00746.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00746.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00746.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00746.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00746.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00746.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00746.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00746.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00746.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00749.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00749.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00749.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00749.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00749.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00749.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00749.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00749.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00749.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00749.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00749.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00749.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00749.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00749.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00749.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00749.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00749.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00749.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00749.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00749.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00749.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00749.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00749.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00749.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00749.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00749.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00749.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00749.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00753.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00753.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00753.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00753.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00753.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00753.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00753.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00753.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00753.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00753.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00753.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00753.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00753.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00753.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00753.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00753.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00753.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00753.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00753.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00753.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00753.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00753.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00753.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00753.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00753.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00753.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00753.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00753.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00754.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00754.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00754.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00754.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00754.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00754.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00754.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00754.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00754.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00754.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00754.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00754.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00754.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00754.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00754.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00754.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00754.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00754.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00754.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00754.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00754.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00754.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00754.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00754.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00754.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00754.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00754.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00754.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00755.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00755.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00755.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00755.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00755.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00755.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00755.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00755.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00755.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00755.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00755.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00755.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00755.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00755.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00755.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00755.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00755.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00755.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00755.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00755.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00755.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00755.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00755.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00755.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00755.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00755.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00755.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00755.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00756.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00756.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00756.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00756.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00756.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00756.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00756.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00756.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00756.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00756.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00756.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00756.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00756.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00756.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00756.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00756.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00756.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00756.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00756.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00756.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00756.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00756.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00756.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00756.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00756.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00756.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00756.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00756.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00757.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00757.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00757.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00757.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00757.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00757.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00757.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00757.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00757.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00757.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00757.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00757.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00757.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00757.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00757.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00757.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00757.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00757.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00757.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00757.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00757.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00757.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00757.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00757.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00757.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00757.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00757.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00757.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00759.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00759.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00759.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00759.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00759.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00759.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00759.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00759.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00759.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00759.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00759.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00759.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00759.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00759.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00759.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00759.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00759.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00759.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00759.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00759.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00759.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00759.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00759.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00759.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00759.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00759.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00759.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00759.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00760.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00760.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00760.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00760.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00760.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00760.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00760.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00760.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00760.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00760.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00760.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00760.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00760.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00760.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00760.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00760.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00760.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00760.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00760.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00760.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00760.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00760.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00760.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00761.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00761.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00761.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00761.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00761.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00761.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00761.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00761.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00761.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00761.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00761.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00761.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00761.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00761.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00761.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00761.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00761.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00761.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00761.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00761.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00761.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00761.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00761.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00762.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00762.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00762.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00762.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00762.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00762.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00762.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00762.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00762.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00762.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00762.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00762.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00762.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00762.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00762.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00762.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00762.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00762.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00762.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00762.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00762.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00762.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00762.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00763.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00763.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00763.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00763.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00763.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00763.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00763.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00763.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00763.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00763.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00763.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00763.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00763.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00763.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00763.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00763.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00763.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00763.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00763.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00763.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00763.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00763.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00763.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00764.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00764.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00764.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00764.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00764.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00764.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00764.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00764.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00764.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00764.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00764.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00764.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00764.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00764.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00764.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00764.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00764.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00764.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00764.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00764.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00764.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00764.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00764.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00764.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00764.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00764.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00764.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00764.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00765.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00765.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00765.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00765.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00765.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00765.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00765.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00765.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00765.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00765.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00765.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00765.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00765.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00765.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00765.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00765.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00765.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00765.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00765.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00766.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00766.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00766.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00766.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00766.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00766.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00766.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00766.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00766.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00766.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00766.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00766.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00766.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00766.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00766.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00766.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00766.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00766.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00766.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00766.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00766.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00766.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00766.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00767.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00767.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00767.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00767.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00767.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00767.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00767.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00767.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00767.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00767.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00767.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00767.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00767.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00767.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00767.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00767.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00767.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00767.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00767.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00767.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00767.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00767.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00767.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00767.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00767.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00767.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00767.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00767.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00798.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00798.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00798.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00798.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00798.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00798.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00798.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00798.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00798.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00798.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00798.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00798.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00798.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00798.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00798.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00798.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00798.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00798.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00798.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00798.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00798.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00798.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00798.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00798.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00798.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00798.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00798.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00798.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00809.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00809.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00809.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00809.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00809.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00809.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00809.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00809.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00809.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00809.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00809.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00809.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00809.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00809.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00809.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00809.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00809.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00809.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00809.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00809.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00809.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00809.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00809.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00809.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00809.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00809.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00809.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00809.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00810.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00810.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00810.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00810.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00810.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00810.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00810.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00810.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00810.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00810.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00810.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00810.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00810.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00810.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00810.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00810.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00810.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00810.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00810.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00810.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00810.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00810.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00810.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00810.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00810.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00810.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00810.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00810.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00816.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00816.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00816.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00816.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00816.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00816.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00816.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00816.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00816.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00816.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00816.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00816.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00816.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00816.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00816.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00816.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00816.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00816.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00816.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00816.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00816.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00816.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00816.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00816.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00816.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00816.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00816.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00816.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00817.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00817.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00817.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00817.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00817.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00817.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00817.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00817.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00817.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00817.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00817.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00817.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00817.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00817.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00817.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00817.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00817.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00817.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00817.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00817.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00817.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00817.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00817.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00817.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00817.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00817.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00817.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00817.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00818.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00818.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00818.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00818.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00818.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00818.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00818.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00818.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00818.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00818.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00818.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00818.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00818.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00818.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00818.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00818.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00818.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00818.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00818.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00818.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00818.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00818.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00818.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00818.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00818.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00818.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00818.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00818.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00825.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00825.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00825.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00825.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00825.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00825.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00825.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00825.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00825.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00825.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00825.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00825.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00825.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00825.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00825.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00825.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00825.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00825.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00825.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00825.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00825.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00825.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00825.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00825.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00825.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00825.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00825.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00825.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00828.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00828.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00828.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00828.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00828.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00828.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00828.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00828.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00828.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00828.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00828.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00828.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00828.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00828.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00828.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00828.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00828.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00828.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00828.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00828.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00828.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00828.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00828.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00828.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00828.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00828.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00828.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00828.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00829.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00829.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00829.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00829.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00829.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00829.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00829.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00829.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00829.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00829.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00829.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00829.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00829.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00829.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00829.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00829.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00829.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00829.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00829.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00829.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00829.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00829.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00829.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00829.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00829.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00829.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00829.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00829.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00831.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00831.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00831.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00831.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00831.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00831.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00831.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00831.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00831.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00831.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00831.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00831.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00831.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00831.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00831.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00831.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00831.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00831.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00831.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00831.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00831.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00831.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00831.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00831.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00831.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00831.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00831.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00831.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00832.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00832.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00832.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00832.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00832.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00832.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00832.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00832.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00832.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00832.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00832.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00832.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00832.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00832.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00832.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00832.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00832.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00832.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00832.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00832.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00832.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00832.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00832.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00832.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00832.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00832.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00832.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00832.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00842.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00842.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00842.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00842.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00842.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00842.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00842.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00842.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00842.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00842.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00842.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00842.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00842.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00842.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00842.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00842.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00842.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00842.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00842.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00842.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00842.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00842.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00842.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00842.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00842.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00842.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00842.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00842.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00843.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00843.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00843.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00843.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00843.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00843.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00843.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00843.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00843.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00843.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00843.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00843.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00843.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00843.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00843.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00843.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00843.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00843.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00843.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00843.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00843.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00843.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00843.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00843.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00843.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00843.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00843.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00843.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00855.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00855.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00855.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00855.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00855.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00855.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00855.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00855.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00855.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00855.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00855.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00855.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00855.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00855.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00855.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00855.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00855.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00855.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00855.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00855.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00855.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00855.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00855.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00857.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00857.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00857.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00857.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00857.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00857.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00857.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00857.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00857.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00857.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00857.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00857.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00857.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00857.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00857.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00857.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00857.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00857.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00857.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00857.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00857.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00857.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00857.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00857.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00857.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00857.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00857.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00857.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00858.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00858.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00858.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00858.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00858.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00858.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00858.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00858.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00858.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00858.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00858.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00858.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00858.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00858.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00858.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00858.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00858.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00858.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00858.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00858.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00858.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00858.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00858.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00858.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00858.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00858.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00858.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00858.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00859.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00859.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00859.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00859.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00859.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00859.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00859.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00859.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00859.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00859.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00859.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00859.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00859.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00859.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00859.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00859.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00859.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00859.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00859.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00859.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00859.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00859.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00859.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00859.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00859.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00859.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00859.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00859.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00860.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00860.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00860.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00860.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00860.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00860.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00860.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00860.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00860.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00860.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00860.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00860.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00860.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00860.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00860.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00860.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00860.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00860.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00860.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00860.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00860.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00860.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00860.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00861.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00861.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00861.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00861.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00861.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00861.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00861.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00861.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00861.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00861.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00861.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00861.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00861.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00861.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00861.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00861.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00861.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00861.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00861.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00861.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00861.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00861.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00861.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00861.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00861.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00861.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00861.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00861.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00862.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00862.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00862.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00862.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00862.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00862.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00862.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00862.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00862.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00862.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00862.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00862.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00862.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00862.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00862.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00862.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00862.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00862.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00862.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00862.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00862.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00862.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00862.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00862.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00862.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00862.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00862.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00862.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00865.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00865.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00865.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00865.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00865.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00865.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00865.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00865.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00865.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00865.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00865.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00865.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00865.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00865.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00865.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00865.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00865.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00865.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00865.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00865.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00865.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00865.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00865.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00865.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00865.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00865.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00865.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00865.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00867.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00867.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00867.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00867.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00867.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00867.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00867.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00867.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00867.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00867.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00867.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00867.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00867.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00867.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00867.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00867.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00867.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00867.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00867.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00867.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00867.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00867.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00867.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00867.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00867.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00867.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00867.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00867.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00868.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00868.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00868.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00868.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00868.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00868.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00868.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00868.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00868.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00868.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00868.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00868.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00868.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00868.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00868.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00868.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00868.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00868.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00868.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00868.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00868.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00868.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00868.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00868.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00868.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00868.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00868.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00868.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00869.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00869.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00869.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00869.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00869.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00869.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00869.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00869.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00869.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00869.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00869.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00869.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00869.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00869.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00869.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00869.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00869.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00869.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00869.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00869.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00869.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00869.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00869.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00869.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00869.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00869.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00869.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00869.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00883.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00883.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00883.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00883.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00883.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00883.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00883.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00883.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00883.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00883.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00883.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00883.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00883.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00883.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00883.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00883.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00883.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00883.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00883.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00883.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00883.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00883.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00883.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00883.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00883.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00883.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00883.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00883.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00884.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00884.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00884.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00884.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00884.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00884.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00884.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00884.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00884.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00884.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00884.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00884.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00884.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00884.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00884.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00884.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00884.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00884.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00884.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00884.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00884.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00884.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00884.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00884.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00884.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00884.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00884.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00884.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00886.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00886.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00886.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00886.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00886.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00886.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00886.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00886.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00886.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00886.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00886.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00886.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00886.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00886.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00886.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00886.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00886.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00886.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00886.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00886.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00886.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00886.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00886.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00887.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00887.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00887.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00887.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00887.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00887.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00887.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00887.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00887.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00887.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00887.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00887.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00887.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00887.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00887.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00887.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00887.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00887.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00887.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00887.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00887.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00887.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00887.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00887.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00887.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00887.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00887.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00887.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00888.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00888.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00888.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00888.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00888.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00888.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00888.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00888.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00888.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00888.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00888.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00888.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00888.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00888.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00888.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00888.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00888.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00888.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00888.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00888.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00888.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00888.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00888.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00889.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00889.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00889.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00889.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00889.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00889.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00889.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00889.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00889.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00889.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00889.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00889.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00889.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00889.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00889.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00889.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00889.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00889.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00889.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00889.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00889.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00889.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00889.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00889.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00889.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00889.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00889.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00889.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00890.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00890.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00890.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00890.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00890.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00890.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00890.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00890.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00890.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00890.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00890.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00890.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00890.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00890.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00890.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00890.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00890.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00890.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00890.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00890.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00890.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00890.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00890.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00890.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00890.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00890.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00890.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00890.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00891.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00891.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00891.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00891.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00891.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00891.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00891.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00891.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00891.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00891.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00891.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00891.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00891.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00891.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00891.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00891.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00891.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00891.biorseo_bgsu_jar3d_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00891.bgsu_jar3d2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00891.biorseo_bgsu_jar3d_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00891.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00891.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00891.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00896.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00896.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00896.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00896.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00896.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00896.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00896.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00896.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00896.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00896.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00896.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00896.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00896.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00896.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00896.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00896.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00896.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00896.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00896.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00896.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00896.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00896.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00896.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00896.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00896.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00896.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00896.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00896.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00901.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00901.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00901.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00901.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00901.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00901.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00901.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00901.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00901.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00901.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00901.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00901.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00901.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00901.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00901.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00901.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00901.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00901.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00901.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00901.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00901.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00901.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00901.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00901.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00901.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00901.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00901.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00901.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00902.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00902.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00902.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00902.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00902.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00902.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00902.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00902.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00902.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00902.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00902.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00902.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00902.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00902.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00902.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00902.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00902.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00902.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00902.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00902.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00902.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00902.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00902.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00902.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00902.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00902.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00902.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00902.biorseo_rin_raw_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00903.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00903.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00903.biorseo_desc_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00903.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00903.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00903.biorseo_desc_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00903.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00903.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00903.biorseo_desc_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00903.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00903.desc_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00903.biorseo_desc_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00903.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00903.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00903.biorseo_bgsu_byp_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00903.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00903.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00903.biorseo_bgsu_byp_B --func B -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00903.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00903.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00903.biorseo_bgsu_byp_C --func C -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00903.fa --bayespaircsv /home/ldurand/biorseo/benchmark_results/PDB_00903.bgsu_byp2.csv -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00903.biorseo_bgsu_byp_D --func D -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00903.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00903.biorseo_rin_raw_A --func A -n
/home/ldurand/biorseo/bin/biorseo -s /home/ldurand/biorseo/benchmark_results/PDB_00903.fa -x /home/ldurand/biorseo/data/modules/CaRNAval/Subfiles/ -o /home/ldurand/biorseo/benchmark_results/noPK/PDB_00903.biorseo_rin_raw_B --func B -n