# Please set the following variables to the correct paths for JAR3D:
jar3dexec="/home/persalteas/Software/jar3dbin/jar3d_2014-12-11.jar"
ILmotifDir="/home/persalteas/Data/RNA/motifs/Matlab_results/IL/3.2/lib"
HLmotifDir="/home/persalteas/Data/RNA/motifs/Matlab_results/HL/3.2/lib"