fa.h
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/*
* $Id$
*
* Copyright (C) 2008-2010 Kengo Sato
*
* This file comes from Ipknot.
*/
#include <list>
#include <string>
using std::list;
using std::string;
class Fasta
{
public:
Fasta() : name_(), seq_(), str_() {}
Fasta(const string& name, const string& seq, const string& str = "") : name_(name), seq_(seq), str_(str) {}
Fasta(const Fasta& fa) : name_(fa.name_), seq_(fa.seq_), str_(fa.str_) {}
Fasta& operator=(const Fasta& fa)
{
if (this != &fa) {
name_ = fa.name_;
seq_ = fa.seq_;
str_ = fa.str_;
}
return *this;
}
const string& name() const { return name_; }
const string& seq() const { return seq_; }
string& seq() { return seq_; }
const string& str() const { return str_; }
unsigned int size() const { return seq_.size(); }
static unsigned int load(list<Fasta>& data, const char* file);
private:
string name_;
string seq_;
string str_;
};