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1 | -.vscode/* | ||
2 | .vscode | 1 | .vscode |
3 | 2 | ||
4 | -# LaTeX temporary files | ||
5 | -doc/*.toc | ||
6 | -doc/*.bbl | ||
7 | -doc/*.gz | ||
8 | -doc/*.log | ||
9 | -doc/*.aux | ||
10 | -doc/*.blg | ||
11 | -doc/*.fls | ||
12 | -doc/*.fdb_latexmk | ||
13 | - | ||
14 | # Docker installation temporary files | 3 | # Docker installation temporary files |
15 | eigen-eigen-323c052e1731 | 4 | eigen-eigen-323c052e1731 |
16 | cplex_installer_12.8_Student.bin | 5 | cplex_installer_12.8_Student.bin |
... | @@ -20,7 +9,6 @@ ViennaRNA-2.4.13 | ... | @@ -20,7 +9,6 @@ ViennaRNA-2.4.13 |
20 | 9 | ||
21 | # Compiled Object files | 10 | # Compiled Object files |
22 | obj/* | 11 | obj/* |
23 | -doc/*.pdf | ||
24 | data/modules/RIN/__pycache__ | 12 | data/modules/RIN/__pycache__ |
25 | 13 | ||
26 | # Executables | 14 | # Executables | ... | ... |
... | @@ -31,18 +31,6 @@ $(OBJECTS): $(OBJDIR)/%.o : $(SRCDIR)/%.cpp $(INCLUDES) | ... | @@ -31,18 +31,6 @@ $(OBJECTS): $(OBJDIR)/%.o : $(SRCDIR)/%.cpp $(INCLUDES) |
31 | $(CC) -c $(CFLAGS) $(CXXFLAGS) $< -o $@ | 31 | $(CC) -c $(CFLAGS) $(CXXFLAGS) $< -o $@ |
32 | @echo -e "\033[00;32mCompiled "$<".\033[00m" | 32 | @echo -e "\033[00;32mCompiled "$<".\033[00m" |
33 | 33 | ||
34 | -doc: mainpdf supppdf | ||
35 | - @echo -e "\033[00;32mLaTeX documentation rendered.\033[00m" | ||
36 | - | ||
37 | -mainpdf: doc/main_bioinformatics.tex doc/references.bib doc/bioinfo.cls doc/natbib.bst | ||
38 | - cd doc; pdflatex -synctex=1 -interaction=nonstopmode -file-line-error main_bioinformatics | ||
39 | - cd doc; bibtex main_bioinformatics | ||
40 | - cd doc; pdflatex -synctex=1 -interaction=nonstopmode -file-line-error main_bioinformatics | ||
41 | - cd doc; pdflatex -synctex=1 -interaction=nonstopmode -file-line-error main_bioinformatics | ||
42 | - | ||
43 | -supppdf: doc/supplementary_material.tex | ||
44 | - cd doc; pdflatex -synctex=1 -interaction=nonstopmode -file-line-error supplementary_material | ||
45 | - | ||
46 | .PHONY: all | 34 | .PHONY: all |
47 | all: $(BINDIR)/$(TARGET) doc | 35 | all: $(BINDIR)/$(TARGET) doc |
48 | 36 | ... | ... |
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