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... | @@ -53,12 +53,12 @@ OBJECTIVE FUNCTIONS FOR THE MODULE INSERTION CRITERIA | ... | @@ -53,12 +53,12 @@ OBJECTIVE FUNCTIONS FOR THE MODULE INSERTION CRITERIA |
53 | `./biorseo.py -i PDB_00304.fa --rna3dmotifs --patternmatch --func B` | 53 | `./biorseo.py -i PDB_00304.fa --rna3dmotifs --patternmatch --func B` |
54 | 54 | ||
55 | * The use of the RNA 3D Motif Atlas placed by JAR3D and scored with function B is not subject to combinatorial issues, but performs a bit worse. It also returns less solutions. Example: | 55 | * The use of the RNA 3D Motif Atlas placed by JAR3D and scored with function B is not subject to combinatorial issues, but performs a bit worse. It also returns less solutions. Example: |
56 | - `./bin/biorseo -i PDB_00304.fa --3dmotifatlas --jar3d --func B` | 56 | + `./biorseo.py -i PDB_00304.fa --3dmotifatlas --jar3d --func B` |
57 | 57 | ||
58 | 58 | ||
59 | 4/ Installation | 59 | 4/ Installation |
60 | ================================== | 60 | ================================== |
61 | -Check the file INSTALL.md for installation instructions. | 61 | +Check the file [INSTALL.md](INSTALL.md) for installation instructions. |
62 | 62 | ||
63 | 5/ List of Options | 63 | 5/ List of Options |
64 | ================================== | 64 | ================================== | ... | ... |
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