Added python code to launch the tool on RNA strand

-EditMe
-rna1999.dG
 .vscode/*
 .vscode
 
@@ -19,3 +17,9 @@ obj/*
 
 # Executables
 bin/*
+
+# results
+results/*
+log_of_the_run.sh
+IL*
+HL*

+# Please set the following variables to the correct paths :
+CPLEXDir="/opt/ibm/ILOG/CPLEX_Studio128_Student"
+IEIGEN="/usr/local/include/eigen3"
+INUPACK="/usr/local/include/nupack"
+jar3dexec="/nhome/siniac/lbecquey/Software/jar3dbin/jar3d_2014-12-11.jar"
+ILmotifDir="/nhome/siniac/lbecquey/Data/RNA/motifs/BGSU/Matlab_results/IL/3.2/lib"
+HLmotifDir="/nhome/siniac/lbecquey/Data/RNA/motifs/BGSU/Matlab_results/HL/3.2/lib"
+descfolder="/local/local/labo/03_tests_biominserter/No_Redondance_DESC/"
+bypdir="/nhome/siniac/lbecquey/Software/BayesPairing/bayespairing/src"

+>1dk1 nts=57 [1dk1] -- secondary structure derived by DSSR
+GGGCGGCCUUCGGGCUAGACGGUGGGAGAGGCUUCGGCUGGUCCACCCGUGACGCUC
+((((.(((....)))..(((((((((...(((....)))..))))).)))..)))))
+>1lng nts=97 [1lng] -- secondary structure derived by DSSR
+UCGGCGGUGGGGGAGCAUCUCCUGUAGGGGAGAUGUAACCCCCUUUACCUGCCGAACCCCGCCAGGCCCGGAAGGGAGCAACGGUAGGCAGGACGUC
+..(.((..(((((.(((((((((....)))))))))..)))))....((((((.....(((.....(((....))).....)))..)))))).)).)
+>1mfq nts=128 [1mfq] -- secondary structure derived by DSSR
+GACACUAAGUUCGGCAUCAAUAUGGUGACCUCCCGGGAGCGGGGGACCACCAGGUUGCCUAAGGAGGGGUGAACCGGCCCAGGUCGGAAACGGAGCAGGUCAAAACUCCCGUGCUGAUCAGUAGUGUc
+((((((..(.(((((((((((.(((((..((((((....))))))..))))).))))......(.(((((.....((((....(((....)))....))))...))))))))))))).)...))))))
+>1mms nts=116 [1mms] -- secondary structure derived by DSSR
+GCUGGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAGUGCGUAACAGCUCACCAGC
+(((((.(((..(((.........)))..))).....(...((......)).).)))))
+>2du3 nts=71 [2du3] -- secondary structure derived by DSSR
+GCCAGGGUGGCAGAGGGGCUUUGCGGCGGACUGCAGAUCCGCUUUACCCCGGUUCGAAUCCGGGCCCUGGC
+(((((((..(((.....[...)))..((((.......))))......(((((..]....))))))))))))
+>2gdi nts=160 [2gdi] -- secondary structure derived by DSSR
+gGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUUc
+(((((((((.((((.(((.[[..))))))......)..)))).....(((...((((......))))...)))..)))))
+>2hoj nts=79 [2hoj] -- secondary structure derived by DSSR
+GCGACUCGGGGUGCCCUCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUCGCa
+((((((((((.((((........)))......)..)))).....(((...((((......))))...)))..)))))).
+>3d2g nts=154 [3d2g] -- secondary structure derived by DSSR
+GGGACCAGGGGUGCUUGUUCACAGGCUGAGAAAGUCCCUUUGAACCUGAACAGGGUAAUGCCUGCGCAGGGAGUGUC
+..((((((((..(((((....))))).........)))).....(((...((((......))))...)))..).)))
+>3e5c nts=54 [3e5c] -- secondary structure derived by DSSR
+gUUCCCGAAAGGAUGGCGGAAACGCCAGAUGCCUUGUAACCGAAAGGGGGAAUa
+((((((..((((.(((((....)))))....))))....((....)))))))).