solved wrong function selection

@@ -60,7 +60,7 @@ int main(int argc, char* argv[])
     string             inputName, outputName, motifs_path_name, basename;
     string             inputName, outputName, motifs_path_name, basename;
     bool               verbose = false;
     bool               verbose = false;
     float              theta_p_threshold;
     float              theta_p_threshold;
-    int                obj_function_nbr, mychar;
+    char               obj_function_nbr;
     char               mea_or_mfe = 'b'; // a for MFE, b for MEA
     char               mea_or_mfe = 'b'; // a for MFE, b for MEA
     list<Fasta>        f;
     list<Fasta>        f;
     ofstream           outfile;
     ofstream           outfile;
@@ -83,9 +83,8 @@ int main(int argc, char* argv[])
     ("first-objective,c",   po::value<unsigned int>(&MOIP::obj_to_solve_)->default_value(2), "Objective to solve in the mono-objective portions of the algorithm")
     ("first-objective,c",   po::value<unsigned int>(&MOIP::obj_to_solve_)->default_value(2), "Objective to solve in the mono-objective portions of the algorithm")
     ("output,o",            po::value<string>(&outputName), "A file to summarize the computation results")
     ("output,o",            po::value<string>(&outputName), "A file to summarize the computation results")
     ("theta,t",             po::value<float>(&theta_p_threshold)->default_value(1e-3, "0.001"), "Pairing probability threshold to consider or not the possibility of pairing")
     ("theta,t",             po::value<float>(&theta_p_threshold)->default_value(1e-3, "0.001"), "Pairing probability threshold to consider or not the possibility of pairing")
-    ("function,f",          po::value<int>(&obj_function_nbr)->default_value('B'), "What objective function to use to include motifs: square of motif size in nucleotides like "
+    ("function,f",          po::value<char>(&obj_function_nbr)->default_value('B'), "What objective function to use to include motifs: square of motif size in nucleotides like "
     "RNA-MoIP (A), light motif size + high number of components (B), site score (C), light motif size + site score + high number of components (D)")
     "RNA-MoIP (A), light motif size + high number of components (B), site score (C), light motif size + site score + high number of components (D)")
-    ("plop,p",              po::value<int>(&mychar), "Just a test")
     
     
     ("mfe,E", "Minimize stacking energies as second criteria (should lead to MFE structure)")
     ("mfe,E", "Minimize stacking energies as second criteria (should lead to MFE structure)")
     ("mea,A", "(default) Maximize expected accuracy as second criteria (should lead to MEA structure)")
     ("mea,A", "(default) Maximize expected accuracy as second criteria (should lead to MEA structure)")
@@ -99,6 +98,7 @@ int main(int argc, char* argv[])
 
 
     try {
     try {
         po::store(po::parse_command_line(argc, argv, desc), vm);    // can throw
         po::store(po::parse_command_line(argc, argv, desc), vm);    // can throw
+        po::notify(vm);
 
 
         if (vm.count("help") or vm.count("-h")) {
         if (vm.count("help") or vm.count("-h")) {
             cout << "Biorseo, bio-objective integer linear programming framework to predict RNA secondary "
             cout << "Biorseo, bio-objective integer linear programming framework to predict RNA secondary "
@@ -132,8 +132,6 @@ int main(int argc, char* argv[])
                     "--help for more information."
                     "--help for more information."
                  << endl;
                  << endl;
             return EXIT_FAILURE;
             return EXIT_FAILURE;
-        } else {
-            cout << "char: " << char(obj_function_nbr)  << " defaulted: " << vm["function"].defaulted() << " plop: " << vm.count("plop") << " " << char(mychar) << endl;
         }
         }
 
 
         po::notify(vm);    // throws on error, so do after help in case there are any problems
         po::notify(vm);    // throws on error, so do after help in case there are any problems
@@ -182,8 +180,6 @@ int main(int argc, char* argv[])
     else
     else
         cerr << "ERR: no source of modules provided !" << endl;
         cerr << "ERR: no source of modules provided !" << endl;
     
     
-    return 0;
-
     MOIP               myMOIP = MOIP(myRNA, source, motifs_path_name.c_str(), theta_p_threshold, verbose);
     MOIP               myMOIP = MOIP(myRNA, source, motifs_path_name.c_str(), theta_p_threshold, verbose);
     double             min, max;
     double             min, max;
     IloConstraintArray F(myMOIP.get_env());
     IloConstraintArray F(myMOIP.get_env());