Louis BECQUEY / biorseo

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Louis BECQUEY
e80920f2 1 parent d10c4d18

Doc in makefile

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Showing 7 changed files with 25 additions and 5 deletions
...@@ -24,6 +24,7 @@ log_of_the_run.sh ...@@ -24,6 +24,7 @@ log_of_the_run.sh
24 logBadDesc.txt 24 logBadDesc.txt
25 gurobi.log 25 gurobi.log
26 temp/* 26 temp/*
27 +test_on_RNAstrand.py
27 28
28 # data 29 # data
29 data/modules/BGSU/HL/3.2/diagnostic/* 30 data/modules/BGSU/HL/3.2/diagnostic/*
......
...@@ -36,8 +36,19 @@ $(OBJECTS): $(OBJDIR)/%.o : $(SRCDIR)/%.cpp $(INCLUDES) ...@@ -36,8 +36,19 @@ $(OBJECTS): $(OBJDIR)/%.o : $(SRCDIR)/%.cpp $(INCLUDES)
36 $(CC) -c $(CFLAGS) $(CXXFLAGS) $< -o $@ 36 $(CC) -c $(CFLAGS) $(CXXFLAGS) $< -o $@
37 @echo "\033[00;32mCompiled "$<".\033[00m" 37 @echo "\033[00;32mCompiled "$<".\033[00m"
38 38
39 +doc: mainpdf supppdf
40 +
41 +mainpdf: doc/main_bioinformatics.tex doc/references.bib doc/bioinfo.cls doc/natbib.bst
42 + cd doc; pdflatex -synctex=1 -interaction=nonstopmode -file-line-error main_bioinformatics
43 + cd doc; bibtex main_bioinformatics
44 + cd doc; pdflatex -synctex=1 -interaction=nonstopmode -file-line-error main_bioinformatics
45 + cd doc; pdflatex -synctex=1 -interaction=nonstopmode -file-line-error main_bioinformatics
46 +
47 +supppdf: doc/supplementary_material.tex
48 + cd doc; pdflatex -synctex=1 -interaction=nonstopmode -file-line-error supplementary_material
49 +
39 .PHONY: all 50 .PHONY: all
40 -all: $(BINDIR)/$(TARGET) 51 +all: $(BINDIR)/$(TARGET) doc
41 52
42 .PHONY: re 53 .PHONY: re
43 re: remove clean all 54 re: remove clean all
...@@ -45,9 +56,12 @@ re: remove clean all ...@@ -45,9 +56,12 @@ re: remove clean all
45 .PHONY: clean 56 .PHONY: clean
46 clean: 57 clean:
47 $(rm) $(OBJECTS) 58 $(rm) $(OBJECTS)
59 + $(rm) doc/supplementary_material.bbl doc/supplementary_material.blg doc/supplementary_material.synctex.gz doc/supplementary_material.log doc/supplementary_material.aux
60 + $(rm) doc/main_bioinformatics.bbl doc/main_bioinformatics.blg doc/main_bioinformatics.synctex.gz doc/main_bioinformatics.log doc/main_bioinformatics.aux doc/OUP_First_SBk_Bot_8401-eps-converted-to.pdf
48 @echo "\033[00;32mCleanup completed.\033[00m" 61 @echo "\033[00;32mCleanup completed.\033[00m"
49 62
50 .PHONY: remove 63 .PHONY: remove
51 -remove: clean 64 +remove:
52 @$(rm) $(BINDIR)/$(TARGET) 65 @$(rm) $(BINDIR)/$(TARGET)
53 - @echo "\033[00;32mExecutable removed!\033[00m" 66 + @$(rm) doc/main_bioinformatics.pdf doc/supplementary_material.pdf
67 + @echo "\033[00;32mExecutable and docs removed!\033[00m"
......
1 +>__'CRYSTAL_STRUCTURE_OF_A_TIGHT-BINDING_GLUTAMINE_TRNA_BOUND_TO_GLUTAMINE_AMINOACYL_TRNA_SYNTHETASE_'_(PDB_00376)
2 +GGGGUAUCGCCAAGCGGUAAGGCACCGGAUUCUGAUUCCGGAGGUCGAGGUUCGAAUCCUCGUACCCCAGCCA
3 +>__'GUANINE_RIBOSWITCH_U22C,_A52G_MUTANT_BOUND_TO_HYPOXANTHINE_'_(PDB_01023)
4 +GGACAUACAAUCGCGUGGAUAUGGCACGCAAGUUUCUGCCGGGCACCGUAAAUGUCCGACUAUGUCCa
5 +>__'SOLUTION_STRUCTURE_OF_THE_P2B-P3_PSEUDOKNOT_FROM_HUMAN_TELOMERASE_RNA_'_(PDB_00857)
6 +GGGCUGUUUUUCUCGCUGACUUUCAGCCCCAAACAAAAAAGUCAGCA
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...@@ -498,8 +498,7 @@ ...@@ -498,8 +498,7 @@
498 % Vol. 00\ no. 00 \@pubyear\\ 498 % Vol. 00\ no. 00 \@pubyear\\
499 % \hfill Pages \thepagerange 499 % \hfill Pages \thepagerange
500 % } 500 % }
501 - \vspace{-2cm} 501 + \hfill\includegraphics{OUP_First_SBk_Bot_8401.eps}}
502 - \hfill\includegraphics{fig/oxford.png}}
503 \vskip2pt 502 \vskip2pt
504 \rule{415pt}{2\p@}\par% 503 \rule{415pt}{2\p@}\par%
505 \helvetica 504 \helvetica
......