Commits · 66fdc3b13da0a36048aea893a22d88c11a1a7084 · Louis BECQUEY / biorseo

12 Feb, 2019 1 commit
- Working "k-Pareto sets" · 66fdc3b1
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  Louis BECQUEY authored 2019-02-12 16:21:16 +0100
08 Feb, 2019 1 commit
- preparing K-Pareto set implementation · 05ded4d7
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  Louis BECQUEY authored 2019-02-08 17:08:00 +0100
07 Feb, 2019 2 commits
- Added a check that min < max · e1bc5b13
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  Louis BECQUEY authored 2019-02-07 15:54:17 +0100
- New o(n²) constraint to forbid lonely basepairs · 2b66aa79
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  Louis BECQUEY authored 2019-02-07 15:30:56 +0100
05 Feb, 2019 2 commits
- merge · c48b33d0
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  Louis BECQUEY authored 2019-02-05 17:20:49 +0100
- Solved issue in ordering non crossing set sizes · aa2f1456
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  Louis BECQUEY authored 2019-02-05 17:18:20 +0100
01 Feb, 2019 2 commits
- Heuristic for pseudoknot level attribution · d143224e
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  Louis BECQUEY authored 2019-02-01 16:19:20 +0100
- Secondary Structure DBN output now supports pseudoknots · a073a9da
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  Louis BECQUEY authored 2019-02-01 11:59:43 +0100
31 Jan, 2019 4 commits
- merging · f3175da2
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  Louis BECQUEY authored 2019-01-31 17:38:47 +0100
- PK-support in Secondary Structure, indev · bfbf2ebc
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  Louis BECQUEY authored 2019-01-31 17:37:37 +0100
- Dunno · 44f044fb
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  Louis BECQUEY authored 2019-01-31 17:37:15 +0100
- Tests on RNAstrand shorts · 150f2d5f
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  Louis BECQUEY authored 2019-01-31 09:49:15 +0100
28 Jan, 2019 1 commit
- Solve 2 then 1 · 0c033378
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  Louis BECQUEY authored 2019-01-28 09:26:54 +0100
25 Jan, 2019 1 commit
- JAR3D score in objective · b7c85685
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  Louis BECQUEY authored 2019-01-25 17:55:31 +0100
24 Jan, 2019 3 commits
- integration avec RNAStrand · e19c77ed
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  Louis BECQUEY authored 2019-01-24 18:13:55 +0100
- removed useless Nupack files · 011bc764
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  Louis BECQUEY authored 2019-01-24 11:02:55 +0100
- Updated documentation · e2aa1dcc
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  Louis BECQUEY authored 2019-01-24 10:58:16 +0100
23 Jan, 2019 1 commit
- Nettoyage + Update Doc · 5f6cb56f
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  Louis BECQUEY authored 2019-01-23 11:26:40 +0100
22 Jan, 2019 2 commits
- Everything works · a5f7e06c
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  Louis BECQUEY authored 2019-01-22 13:51:51 +0100
- Working but forbid_solution · c06db5fc
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  Louis BECQUEY authored 2019-01-22 10:26:19 +0100
10 Jan, 2019 1 commit
- Using external Nupack · 3a5be256
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  Louis BECQUEY authored 2019-01-10 13:38:16 +0100
14 Dec, 2018 1 commit
- Output changes · d7291458
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  Louis BECQUEY authored 2018-12-14 10:34:06 +0100
11 Dec, 2018 4 commits
- O(N⁴) posterior try · 5958dee0
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  Louis BECQUEY authored 2018-12-11 19:36:51 +0100
- Compare O(N³) and O(N⁴) · 21d41bce
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  Louis BECQUEY authored 2018-12-11 17:56:14 +0100
- Bounds testing for O(N³) => no segfaults · bc46fc65
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  Louis BECQUEY authored 2018-12-11 17:39:41 +0100
- Custom O(N3) algorithm · 5d2142ea
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  Louis BECQUEY authored 2018-12-11 16:57:13 +0100
10 Dec, 2018 1 commit
- Personal McCaskill version · 562cafad
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  Louis BECQUEY authored 2018-12-10 12:40:09 +0100
07 Dec, 2018 2 commits
- debug O(N3) · 0fd6740b
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  Louis BECQUEY authored 2018-12-07 04:16:36 +0100
- Debug O(N4) · feeacfe6
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  Louis BECQUEY authored 2018-12-07 03:20:09 +0100
06 Dec, 2018 1 commit
- partition function ON3 · 11e1e5f3
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  Louis BECQUEY authored 2018-12-06 17:04:46 +0100
05 Dec, 2018 2 commits
- tests for allowed_basepairs · e98d5c67
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  Louis BECQUEY authored 2018-12-05 19:00:16 +0100
- solved tensor dimension issue · 034412a0
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  Louis BECQUEY authored 2018-12-05 15:59:23 +0100
04 Dec, 2018 3 commits
- Qx indices issue · 7b990f00
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  Louis BECQUEY authored 2018-12-04 15:26:03 +0100
- .clang-format in the git repo · f2d10574
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  Louis BECQUEY authored 2018-12-04 15:08:25 +0100
- fastILloops procedure · 97148610
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  Louis BECQUEY authored 2018-12-04 11:57:24 +0100
30 Nov, 2018 1 commit
- O(N⁵) partition function algorithm with PK · 02e5c2ec
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  Louis BECQUEY authored 2018-11-30 12:53:59 +0100
29 Nov, 2018 2 commits
- Deleted Nupack · 26cfe925
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  Louis BECQUEY authored 2018-11-29 14:12:28 +0100
- partition function algorithm O(N^4) · c3d4881a
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  Louis BECQUEY authored 2018-11-29 13:39:24 +0100
27 Nov, 2018 1 commit
- Automatisation dans le script python + theta en paramètre · d54ab8ad
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  Louis BECQUEY authored 2018-11-27 16:59:42 +0100
23 Nov, 2018 1 commit
- Compatible c++14 · 9832d1ec
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  Louis BECQUEY authored 2018-11-23 17:28:49 +0100