SSOM.py
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import tensorflow as tf
import numpy as np
from .SOM import SOM, load_SOM_base
from .tf_util import tf_base
from .util import check_dir
########################
# Supervised SOM layer #
########################
def init_SLSOM(path,som):
parameter = {}
with open(path+"parameters.txt") as f:
for line in f:
splitted = line.split("\t")
parameter[splitted[0]] = splitted[1]
tmp = SLSOM(som=som,
nb_label=int(parameter["nb_label"])
)
return tmp
class SLSOM(object):
def __init__(self,som,nb_label,alpha = 0.5,verbose=True):
self.tf_object = som.tf_object
self.ulen = som.ulen
self.nb_label = nb_label
self.som = som
self.alpha = alpha
self.verbose = verbose
with self.tf_object.graph.as_default():
self.W = tf.Variable(tf.random_normal([self.ulen,self.nb_label],dtype=tf.float64))
self.W_loader = tf.placeholder(tf.float64,shape=[self.ulen,self.nb_label])
self.load_W = self.W.assign(self.W_loader)
self.biases = tf.Variable(tf.random_normal([self.nb_label],dtype=tf.float64))
self.biases_loader = tf.placeholder(tf.float64,shape=[self.nb_label])
self.load_biases = self.biases.assign(self.biases_loader)
self.it_max = tf.placeholder(tf.int32)
self.it = tf.Variable(0,dtype=tf.int32)
self.update_it = self.it.assign_add(1)
self.data = self.som.sim2units(self.som.data2pred)
# self.data /= tf.sqrt(tf.reduce_sum(tf.pow(self.data,2.0),axis=1,keepdims=True))
self.data_size = tf.placeholder(tf.int32,shape=[1])
self.lambda_penality = tf.placeholder(tf.float64,shape=[1])
self.max_it = tf.placeholder(tf.int32,shape=[1])
self.labels = tf.placeholder(tf.int32,shape=[None])
self.train_op = self.minimize_loss()
self.proba_data_op = self.proba_class_op()
self.prediction = self.prediction_op(self.proba_data_op)
self.update_it_som = self.som.it.assign_add(1)
def learning_rate(self,it):
tmp = 1.0-tf.cast(self.it,tf.float64)/(tf.cast(self.it_max,tf.float64))
tmp = tf.where(tf.is_nan(tmp),tf.zeros_like(tmp),tmp)
return tmp
def save(self,path):
W = self.get_W()
biases = self.get_biases()
np.savetxt(path+"W.txt",np.array(W))
np.savetxt(path+"biases.txt",np.array(biases))
check_dir(path)
with open(path+"parameters.txt","w") as f:
towrite = ""
towrite += "nb_label\t"+str(self.nb_label)+"\n"
f.write(towrite)
def load(self,path):
W = np.loadtxt(path+"W.txt")
biases = np.loadtxt(path+"biases.txt")
self.tf_object.run([self.load_W,self.load_biases],feed_dict={self.W_loader: W, self.biases_loader: biases})
def minimize_loss(self):
x = self.data
dist = self.som.dist2units(self.som.data2pred)
bmus = tf.argmin(dist,1)
dist_bmu = self.som.dist_bmus_op(bmus)
neighbour = self.som.R(tf.sqrt(tf.reduce_sum(tf.pow(
tf.cast(tf.expand_dims(self.som.units_position,1) - tf.expand_dims(self.som.units_position,0),tf.float64)
,2.0),2)),self.alpha*tf.cast(self.learning_rate(self.it),tf.float64)*max(self.som.dim)/2.0)
neighbour /= tf.reduce_sum(neighbour,axis=1,keepdims=True)
x = tf.reduce_sum(tf.expand_dims(neighbour,0) * tf.expand_dims(x,1),2)
y = tf.matmul(
x,
self.W
) + self.biases
y_ = tf.one_hot(
self.labels,
self.nb_label,
dtype=tf.float64
)
self.loss = tf.reduce_mean(tf.losses.sigmoid_cross_entropy(y_,y))
regularizer = tf.contrib.layers.l2_regularizer(self.lambda_penality)
penality = regularizer(self.W)
optimizer = tf.train.MomentumOptimizer(0.05,0.25)
loss2 = tf.add(self.loss,penality)
applied = optimizer.minimize(loss2,var_list=[self.W,self.biases,self.som.units])
return applied
def proba_class_op(self):
x = self.data
dist = self.som.dist2units(self.som.data2pred)
bmus = tf.argmin(dist,1)
dist_bmu = self.som.dist_bmus_op(bmus)
y = tf.matmul(
x,
self.W
) + self.biases
return tf.nn.sigmoid(y)
def prediction_op(self,y):
return tf.argmax(y,1)
def get_W(self):
return self.tf_object.run(self.W)
def get_biases(self):
return self.tf_object.run(self.biases)
def train(self,data,labels,nb_it=10000,batch_size=None, penality=0.001):
nb_data = data.shape[0]
pen = np.array([penality])
it = 0
training_size = batch_size if not batch_size is None else data.shape[0]
loss_old = 0.0
while it < nb_it:
if not batch_size is None:
idx = np.concatenate([np.random.choice(np.flatnonzero(labels == c),replace=False,size=[batch_size]) for c in range(self.nb_label)])
data2 = data[idx,:]
labels2 = labels[idx]
loss_old = self.tf_object.run(self.loss,
feed_dict={
self.som.data2pred:data2,
self.labels:labels2,
self.lambda_penality:pen,
self.it_max:nb_it
})
else:
data2 = data
labels2 = labels
self.tf_object.run(self.train_op,
feed_dict={
self.som.data2pred:data2,
self.labels:labels2,
self.lambda_penality:pen,
self.it_max:nb_it
})
loss = self.tf_object.run(self.loss,
feed_dict={
self.som.data2pred:data2,
self.labels:labels2,
self.lambda_penality:pen,
self.it_max:nb_it
})
delta_loss = np.absolute(loss-loss_old)
bool_loss = delta_loss < np.power(10,-6.0)
if self.verbose:
print("It SLSOM: "+str(it))
print("Loss delta: ", delta_loss)
if bool_loss:
break
else:
loss_old = loss
it = self.tf_object.run(self.update_it)
print("Weights learned")
def predict(self,data):
pred,proba = self.tf_object.run([self.prediction,self.proba_data_op],
feed_dict={
self.som.data2pred:data
})
return (pred,proba)
def proba_data(self,data):
prob = self.tf_object.run(self.proba_data_op,
feed_dict={
self.som.data2pred:data
})
return prob