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Ludovic PLATON
/
IRSOM
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Authored by
Ludovic PLATON
2018-02-09 09:38:04 +0000
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@@ -38,14 +38,14 @@ make
## Train a model
Default usage:
```
bash
python scripts/train.py --featurer
=
${
path_IRSOM
}
/bin/
f
eaturer -c coding.fasta -n noncoding.fasta --output
=
output_dir_of_model
python scripts/train.py --featurer
=
${
path_IRSOM
}
/bin/
F
eaturer -c coding.fasta -n noncoding.fasta --output
=
output_dir_of_model
```
The use of multiple fasta files are allowed with this script.
For example, we can create a model with 2 coding fasta files and 3 non-coding fasta files with the following command:
```
bash
python scripts/train.py --featurer
=
${
path_IRSOM
}
/bin/
f
eaturer -c coding1.fasta -c coding2.fasta -n noncoding1.fasta -n noncoding2.fasta -n noncoding3.fasta
python scripts/train.py --featurer
=
${
path_IRSOM
}
/bin/
F
eaturer -c coding1.fasta -c coding2.fasta -n noncoding1.fasta -n noncoding2.fasta -n noncoding3.fasta
```
The model parameters can be set by the command parameters:
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