Ludovic PLATON / IRSOM

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Ludovic PLATON
ec68c62b 1 parent 12e17b2a

Fixing plot method for rejected transcript

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Showing 2 changed files with 2 additions and 3 deletions
...@@ -45,8 +45,7 @@ def import_ncRNA(path): ...@@ -45,8 +45,7 @@ def import_ncRNA(path):
45 ''' 45 '''
46 Plot function 46 Plot function
47 ''' 47 '''
48 -def plot_repartition(data,m,n,name): 48 +def plot_repartition(data,m,n,name,labels_names):
49 - labels_names = [str(x) for x in data[0]]
50 repartition = data[1] 49 repartition = data[1]
51 dico = [] 50 dico = []
52 N = np.sum(repartition) 51 N = np.sum(repartition)
......
...@@ -37,7 +37,7 @@ def save_pred(som,data,data_names,y,proba,bmu,path): ...@@ -37,7 +37,7 @@ def save_pred(som,data,data_names,y,proba,bmu,path):
37 37
38 np.savetxt(path+"result.txt",res,header="Sequence_name\tBMU\tlabel"+"".join(["\tproba_class_"+str(i) for i in range(proba.shape[1])]),delimiter="\t",fmt="%s") 38 np.savetxt(path+"result.txt",res,header="Sequence_name\tBMU\tlabel"+"".join(["\tproba_class_"+str(i) for i in range(proba.shape[1])]),delimiter="\t",fmt="%s")
39 rep,_ = som.repartition_map(data,y) 39 rep,_ = som.repartition_map(data,y)
40 - plot_repartition(rep,som.dim[0],som.dim[1],path+"plot_repartition") 40 + plot_repartition(rep,som.dim[0],som.dim[1],path+"plot_repartition",y_label)
41 plot_density(np.array(y_label), proba,path+"plot_density.png") 41 plot_density(np.array(y_label), proba,path+"plot_density.png")
42 42
43 def main(): 43 def main():
......