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/
DeepGONet
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Authored by
Victoria BOURGEAIS
2020-10-13 19:04:17 +0200
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bfbcf3ccf9b5ffde3cacdae8bc4b1b654934ae0f
bfbcf3cc
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10147d57
add intepretation tool
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.gitignore
Interpretation_tool.ipynb
README.md
filesforNNarch.zip
requirements.txt
.gitignore
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adj_matrix.csv
first_matrix_connection_GO.csv
go_level.csv
X_test.npz
X_train.npz
filesforNNarch.zip
__pycache__/
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Interpretation_tool.ipynb
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README.md
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@@ -20,6 +20,8 @@ The full dataset can be downloaded on ArrayExpress database under the id [E-MTAB
[
test set
](
https://entrepot.ibisc.univ-evry.fr/f/057f1ffa0e6c4aab9bee/?dl=1
)
Additional files for NN architecture:
[
filesforNNarch
](
https://entrepot.ibisc.univ-evry.fr/f/6f1c513798df41999b5d/?dl=1
)
### Usage
Deep GONet was achieved with the $L_{GO}$ regularization and the hyperparameter $
\a
lpha=1e^{-2}$.
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@@ -81,3 +83,7 @@ Without regularization:
```
bash
python DeepGONet.py --alpha=0 --EPOCHS=100 --is_training=True --display_step=5 --save=True --processing="train"
```
### Interpretation tool
Please see the notebook entitled
*Interpretation_tool.ipynb*
to perform the biological interpretation of the results.
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filesforNNarch.zip
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requirements.txt
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@@ -12,4 +12,5 @@ scipy==1.2.0
seaborn==0.9.0
tensorflow==1.12.0
tensorflow-gpu==1.12.0
tqdm==4.36.1
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tqdm==4.36.1
innvestigate==1.0.8
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