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EvryRNA
/
C-RCPred
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Authored by
Guillaume POSTIC
2022-12-06 19:23:25 +0000
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@@ -34,7 +34,7 @@ In the [Dockerfile](Dockerfile), the other dependencies that must be installed c
Testing
-------
Two sets of files are provided to test C-RCPred. Each set contains 4 input files (.fasta, .txt30, .txt90, and .txt).
A
n example of command is:
Thus, a
n example of command is:
```
./C-RCPred -f test/NDB_00016.fasta \
-s test/NDB_00016_str.txt30 \
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@@ -44,9 +44,10 @@ An example of command is:
-g NDB_00016_graph.txt \
-q NDB_00016_cliques.txt -m 20
```
Here, the results are written in the
`NDB_00016_graph.txt`
and
`NDB_00016_cliques.txt`
files, in addition to the terminal output.
The result of this command (terminal's standard output) will be the predicted secondary structures, represented with the dot-bracket notation.
Other results will be written in the
*NDB_00016_graph.txt*
and
*NDB_00016_cliques.txt*
files (see options below).
<br/>
The same test can be performed with the files provided for
PDB_00805
.
The same test can be performed with the files provided for
*PDB_00805*
.
### Options
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