EvryRNA / C-RCPred

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Guillaume POSTIC
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...@@ -34,7 +34,7 @@ In the [Dockerfile](Dockerfile), the other dependencies that must be installed c ...@@ -34,7 +34,7 @@ In the [Dockerfile](Dockerfile), the other dependencies that must be installed c
34 Testing 34 Testing
35 ------- 35 -------
36 Two sets of files are provided to test C-RCPred. Each set contains 4 input files (.fasta, .txt30, .txt90, and .txt). 36 Two sets of files are provided to test C-RCPred. Each set contains 4 input files (.fasta, .txt30, .txt90, and .txt).
37 -An example of command is: 37 +Thus, an example of command is:
38 ``` 38 ```
39 ./C-RCPred -f test/NDB_00016.fasta \ 39 ./C-RCPred -f test/NDB_00016.fasta \
40 -s test/NDB_00016_str.txt30 \ 40 -s test/NDB_00016_str.txt30 \
...@@ -44,9 +44,10 @@ An example of command is: ...@@ -44,9 +44,10 @@ An example of command is:
44 -g NDB_00016_graph.txt \ 44 -g NDB_00016_graph.txt \
45 -q NDB_00016_cliques.txt -m 20 45 -q NDB_00016_cliques.txt -m 20
46 ``` 46 ```
47 -Here, the results are written in the `NDB_00016_graph.txt` and `NDB_00016_cliques.txt` files, in addition to the terminal output. 47 +The result of this command (terminal's standard output) will be the predicted secondary structures, represented with the dot-bracket notation.
48 +Other results will be written in the *NDB_00016_graph.txt* and *NDB_00016_cliques.txt* files (see options below).
48 <br/> 49 <br/>
49 -The same test can be performed with the files provided for PDB_00805. 50 +The same test can be performed with the files provided for *PDB_00805*.
50 51
51 ### Options 52 ### Options
52 53
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