Louis BECQUEY / RNANet

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Louis BECQUEY
693d73e7 1 parent d0371fa5

typo in Jan 2021 update

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Showing 2 changed files with 2 additions and 2 deletions
...@@ -2501,7 +2501,7 @@ def work_pssm_remap(f, fill_gaps): ...@@ -2501,7 +2501,7 @@ def work_pssm_remap(f, fill_gaps):
2501 many=True, data=re_mappings) 2501 many=True, data=re_mappings)
2502 2502
2503 # Delete alignment columns that are not used anymore from the database 2503 # Delete alignment columns that are not used anymore from the database
2504 - current_family_columns = [ x[0] for x in sql_ask_database(conn, f"SELECT index_ali FROM align_column WHERE rfam_acc = {f}";)] 2504 + current_family_columns = [ x[0] for x in sql_ask_database(conn, f"SELECT index_ali FROM align_column WHERE rfam_acc = {f};")]
2505 unused = [] 2505 unused = []
2506 for col in current_family_columns: 2506 for col in current_family_columns:
2507 if col not in columns_to_save: 2507 if col not in columns_to_save:
......
...@@ -4,7 +4,7 @@ cd /home/lbecquey/Projects/RNANet ...@@ -4,7 +4,7 @@ cd /home/lbecquey/Projects/RNANet
4 rm -rf latest_run.log errors.txt 4 rm -rf latest_run.log errors.txt
5 5
6 # Run RNANet 6 # Run RNANet
7 -bash -c 'time python3.8 /RNAnet.py --3d-folder /home/lbecquey/Data/RNA/3D/ --seq-folder /home/lbecquey/Data/RNA/sequences/ -r 20.0 --extract -s --archive' > latest_run.log 2>&1 7 +bash -c 'time python3.8 ./RNAnet.py --3d-folder /home/lbecquey/Data/RNA/3D/ --seq-folder /home/lbecquey/Data/RNA/sequences/ -r 20.0 --extract -s --archive' > latest_run.log 2>&1
8 echo 'Compressing RNANet.db.gz...' >> latest_run.log 8 echo 'Compressing RNANet.db.gz...' >> latest_run.log
9 touch results/RNANet.db # update last modification date 9 touch results/RNANet.db # update last modification date
10 gzip -k /home/lbecquey/Projects/RNANet/results/RNANet.db # compress it 10 gzip -k /home/lbecquey/Projects/RNANet/results/RNANet.db # compress it
......