Louis BECQUEY

versioning details

...@@ -7,7 +7,7 @@ Future versions might compute a real MSA-based clusering directly with Rfamseq n ...@@ -7,7 +7,7 @@ Future versions might compute a real MSA-based clusering directly with Rfamseq n
7 This script prepares the dataset from available public data in PDB and Rfam. 7 This script prepares the dataset from available public data in PDB and Rfam.
8 8
9 9
10 -**Please cite**: *Coming soon, expect it summer 2020* 10 +**Please cite**: *Coming soon, expect it in 2021*
11 11
12 # What it does 12 # What it does
13 The script follows these steps: 13 The script follows these steps:
...@@ -72,7 +72,7 @@ You need to install: ...@@ -72,7 +72,7 @@ You need to install:
72 72
73 ## Command line 73 ## Command line
74 Run `./RNANet.py --3d-folder path/to/3D/data/folder --seq-folder path/to/sequence/data/folder [ - other options ]`. 74 Run `./RNANet.py --3d-folder path/to/3D/data/folder --seq-folder path/to/sequence/data/folder [ - other options ]`.
75 -It requires solid hardware to run. It takes around 15 hours the first time, and 9h then, tested on a server with 32 cores and 48GB of RAM. 75 +It requires solid hardware to run. It takes around around 12 to 15 hours the first time, and 1 to 3h then, tested on a server with 32 cores and 48GB of RAM.
76 The detailed list of options is below: 76 The detailed list of options is below:
77 77
78 ``` 78 ```
......
...@@ -1026,7 +1026,7 @@ class Pipeline: ...@@ -1026,7 +1026,7 @@ class Pipeline:
1026 print(f"nohup bash -c 'time {runDir}/RNAnet.py --3d-folder ~/Data/RNA/3D/ --seq-folder ~/Data/RNA/sequences -s --archive' &") 1026 print(f"nohup bash -c 'time {runDir}/RNAnet.py --3d-folder ~/Data/RNA/3D/ --seq-folder ~/Data/RNA/sequences -s --archive' &")
1027 sys.exit() 1027 sys.exit()
1028 elif opt == '--version': 1028 elif opt == '--version':
1029 - print("RNANet 1.0 alpha ") 1029 + print("RNANet 1.1 beta")
1030 sys.exit() 1030 sys.exit()
1031 elif opt == "-r" or opt == "--resolution": 1031 elif opt == "-r" or opt == "--resolution":
1032 assert float(arg) > 0.0 and float(arg) <= 20.0 1032 assert float(arg) > 0.0 and float(arg) <= 20.0
......