automation script for EvryRNA

@@ -1411,7 +1411,10 @@ class Pipeline:
             subprocess.run(["tar","-C", path_to_3D_data + "/datapoints","-czf",f"results/archive/RNANET_datapoints_{time_str}.tar.gz","."])
 
         # Update shortcuts to latest versions
-        subprocess.run(["rm", "-f", runDir + "/results/RNANET_datapoints_latest.tar.gz", runDir + "/results/summary_latest.csv", runDir + "/results/families_latest.csv"])
+        subprocess.run(["rm", "-f", runDir + "/results/RNANET_datapoints_latest.tar.gz", 
+                                    runDir + "/results/summary_latest.csv", 
+                                    runDir + "/results/families_latest.csv"
+                        ])
         subprocess.run(['ln',"-s", runDir +f"/results/archive/RNANET_datapoints_{time_str}.tar.gz", runDir + "/results/RNANET_datapoints_latest.tar.gz"])
         subprocess.run(['ln',"-s", runDir +f"/results/archive/summary_{time_str}.csv", runDir + "/results/summary_latest.csv"])
         subprocess.run(['ln',"-s", runDir +f"/results/archive/families_{time_str}.csv", runDir + "/results/families_latest.csv"])

 # This is a script supposed to be run periodically as a cron job
 
-# Run RNANet
 cd /home/lbecquey/Projects/RNANet;
 rm -f stdout.txt stderr.txt errors.txt;
+
+# Run RNANet
 time './RNAnet.py --3d-folder /home/lbequey/Data/RNA/3D/ --seq-folder /home/lbecquey/Data/RNA/sequences/ -s -r 20.0 --archive' > stdout.txt 2> stderr.txt;
 
+# Compress
+rm -f results/RNANet.db.gz
+gzip -k results/RNANet.db
+
 # Sync in Seafile
 seaf-cli start;
-
+sleep 1h;
 seaf-cli stop;